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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM633
Library AF
(Link to library)
Clone ID AFM633
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM633 (AFM633Q) /CSM/AF/AFM6-B/AFM633Q.Seq.d/
XXXXXXXXXXTAGTTGATTGCTCTGGTCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTA
ATGAATAATGCATTTGATTATATCATTAAAAAACAAGGGTATTGACACTGAAAGTAGTTA
TCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAAC
CATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCA
ACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATC
TGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGT
TGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCAT
TGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGT
TAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTAT
AAAAGGTTACATTTTAATGTCAAAGGATNGANAGAATAAGTGTNNTATTGCATCAGNNA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---lialvqkktlvvmvv**IMHLIISLKNKGIDTESSYPYTAETGSTCLFNKSDIGATI
KGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVG
YGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIK
GYILMSKDXXNKCXIASX
Translated Amino Acid sequence (All Frames) 
Frame A:
---s*llwsrrklwl*wwfne*ci*lyh*ktrvltlkvvihillklvqhvysinlilvqp
lkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*ll
vmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*
kvtf*cqrxxrisvxlhqx


Frame B:
---vdcsgpeenfgcdgglmnnafdyiikkqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh
*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscw
lwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgyk
rlhfnvkgxxe*vxycix


Frame C:
---lialvqkktlvvmvv**IMHLIISLKNKGIDTESSYPYTAETGSTCLFNKSDIGATI
KGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVG
YGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIK
GYILMSKDXXNKCXIASX
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM633 (AFM633Q) /CSM/AF/AFM6-B/AFM633Q.Seq.d/                       1138   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1114   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1114   0.0
SFG645 (SFG645Q) /CSM/SF/SFG6-B/SFG645Q.Seq.d/                       1114   0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/                       1114   0.0
AFO852 (AFO852Q) /CSM/AF/AFO8-C/AFO852Q.Seq.d/                       1114   0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/                       1114   0.0
AFM621 (AFM621Q) /CSM/AF/AFM6-A/AFM621Q.Seq.d/                       1114   0.0
AFM502 (AFM502Q) /CSM/AF/AFM5-A/AFM502Q.Seq.d/                       1114   0.0
AFK761 (AFK761Q) /CSM/AF/AFK7-C/AFK761Q.Seq.d/                       1114   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347141) Dictyostelium discoideum cDNA clone:dda26a10, 3' ...  1138   0.0    1
(BJ346234) Dictyostelium discoideum cDNA clone:dda30f08, 3' ...  1106   0.0    1
(BJ345481) Dictyostelium discoideum cDNA clone:dda23g22, 3' ...  1080   0.0    1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina...   975   0.0    2
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462.        975   0.0    2
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524.        975   0.0    2
(BJ401212) Dictyostelium discoideum cDNA clone:dds22c14, 3' ...   975   0.0    3
(BJ400695) Dictyostelium discoideum cDNA clone:dds14i12, 3' ...   975   0.0    2
(BJ399605) Dictyostelium discoideum cDNA clone:dds6n16, 3' e...   975   0.0    2
(BJ376299) Dictyostelium discoideum cDNA clone:ddc21o20, 3' ...   975   0.0    2
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   324   e-100
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   170   1e-46
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   170   1e-46
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   155   3e-43
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   153   6e-42
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   150   7e-42
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   152   5e-41
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   149   7e-40
EU025855_1(EU025855|pid:none) Dermacentor variabilis cathepsin L...   146   6e-39
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like...   145   7e-39
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM633 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM633Z
3' end seq. 
>AFM633Z.Seq
XXXXXXXXXXTAGTTGATTGCTCTGGTCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTA
ATGAATAATGCATTTGATTATATCATTAAAAAACAAGGGTATTGACACTGAAAGTAGTTA
TCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAAC
CATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCA
ACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATC
TGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGT
TGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCAT
TGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGT
TAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTAT
AAAAGGTTACATTTTAATGTCAAAGGATNGANAGAATAAGTGTNNTATTGCATCAGNNA
Length of 3' end seq. 599
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -