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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM628
Library AF
(Link to library)
Clone ID AFM628
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM628P
(Link to Original site)
Representative DNA sequence 
>AFM628 (AFM628Q) /CSM/AF/AFM6-B/AFM628Q.Seq.d/
ACCCAAGTGAATTCATAATAATTAAAATTATATGATTTTTGTCGTATATCATTAATCAGT
TCCCACAACATCCATCACAACACACAAACTCATCACCAATCTATCAAATAAACCGATCTT
TTAAACCCTCAACCAAAAAAAACTATCAATTAAAATGATATGTGCAATTTCGGGTTCAAC
AACAGAAGAACCAGTAATTTCAACAAAAACTGGAAATGTTTATGAAAAAAGATTGATTGA
AAAATATATAGATACAAATGGTAAAGAGCCAACAACCGGTGAACCATTAGGTTTGAGTGA
TTTAATCACTGTAAAGATTGGAAAAACAGTAAAGCCAAGACCAACCACTGCCACTAGTAT
TCCAAGTATGTTGCAATTGTTTCAAAATGAATGGGATTCTTTAATGTTGGAAACCTTCAC
ATTGAAACAACAACATGAAACTGTTCGTCAAGAGTTGGCACATTCAATGTATCAATATGA
TGCTGCCTGTAGAGTAATCGCTAGATTAGTTAAAGAAAGAGATGCTGCAAGATCTGCTTT
AGCAAACGCTCGTAATATAGTACAACAACAACAACAACAAACAAATAACAACAACAACAA
CAACAXXXXXXXXXXATAGTTTCAGCAGGCTCCGATGCAGTGATCAGAGTTGTAAAAGGT
GGTGAAAGTCCATCTAAAAAGACCTACACTCAATATAAATCCACTTATCAATTCGCCCAT
AAAGCTAGTGTCACCGATATATCGTTACATGTATTGGGAGATTATATAATTTCATCTTCA
CTCGATAAATCATTGAATATGTACGATATTGTCAATGGAACTCATTTGACTAGCTTTGGT
CAATCTCAACAACTTTGTTACACTAGTGTCGCCTTCCACCCAGATGGTATGTTTTTCGCA
GCCGGTACTCAAAATGGTGTGGTCAAAATCTTTGATCTCAAGAGTAAAGTAAACAGTTTC
AACTTTCAAGGTCTTTCAACCGCTGTCAATTGTATCTCCTTCTCTGAGAATGGTTACTAT
TTAACCGCAGCCGATAATAACACTGTGAAATTATTTGATCTTCGTAAAGCTGCCACTAAA
AACTCACCAGATATTCAAACCATCACTTTGGATAATCAACAAATTAAATCTATCAATTTC
GATTACTCTAGCCAATATCTTGGTGTAGCATCTTCCAATCAAATCAATCTTTACAGTTGC
AAATCAAAACAAAAACCACCAATCTCTTCTATTCATTCAATTGATTCAGATTGTTTAGAC
TTTAAATGGGCAAGACCAAATTCAAATTTCTTTGTAACTTCTTCCTCTTCTAAAAATAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
pk*ihnn*nymifvvyh*svpttsitthklitnlsnkpif*TLNQKKLSIKMICAISGST
TEEPVISTKTGNVYEKRLIEKYIDTNGKEPTTGEPLGLSDLITVKIGKTVKPRPTTATSI
PSMLQLFQNEWDSLMLETFTLKQQHETVRQELAHSMYQYDAACRVIARLVKERDAARSAL
ANARNIVQQQQQQTNNNNNNN---

---IVSAGSDAVIRVVKGGESPSKKTYTQYKSTYQFAHKASVTDISLHVLGDYIISSSLD
KSLNMYDIVNGTHLTSFGQSQQLCYTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNF
QGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKAATKNSPDIQTITLDNQQIKSINFDY
SSQYLGVASSNQINLYSCKSKQKPPISSIHSIDSDCLDFKWARPNSNFFVTSSSSKN
Translated Amino Acid sequence (All Frames) 
Frame A:
tqvns**lklydfcrislisshnihhntqthhqsik*tdllnpqpkktin*ndmcnfgfn
nrrtsnfnknwkcl*kkid*kiyrykw*rannr*tirfe*fnhckdwknskaktnhch*y
skyvaivsk*mgffnvgnlhiettt*ncssrvgtfnvsi*ccl*snr*is*rkrcckicf
skrs*ysttttttnk*qqqqq---

---IVSAGSDAVIRVVKGGESPSKKTYTQYKSTYQFAHKASVTDISLHVLGDYIISSSLD
KSLNMYDIVNGTHLTSFGQSQQLCYTSVAFHPDGMFFAAGTQNGVVKIFDLKSKVNSFNF
QGLSTAVNCISFSENGYYLTAADNNTVKLFDLRKAATKNSPDIQTITLDNQQIKSINFDY
SSQYLGVASSNQINLYSCKSKQKPPISSIHSIDSDCLDFKWARPNSNFFVTSSSSKN

Frame B:
pk*ihnn*nymifvvyh*svpttsitthklitnlsnkpif*TLNQKKLSIKMICAISGST
TEEPVISTKTGNVYEKRLIEKYIDTNGKEPTTGEPLGLSDLITVKIGKTVKPRPTTATSI
PSMLQLFQNEWDSLMLETFTLKQQHETVRQELAHSMYQYDAACRVIARLVKERDAARSAL
ANARNIVQQQQQQTNNNNNNN---

---*fqqapmq*sel*kvvkvhlkrptlninplinspiklvspiyrymyweii*fhlhsi
nh*ictilsmeli*lalvnlnnfvtlvspstqmvcfsqpvlkmvwskslisrvk*tvstf
kvfqplsivspslrmvti*pqpiitl*nylifvklplkthqifkpslwiinklnlsisit
lanilv*hlpiksiftvanqnknhqsllfiqliqiv*tlngqdqiqisl*llpllki

Frame C:
psefiiikii*flsyiinqfpqhpsqhtnsspiyqinrsfkpstkknyqlk*yvqfrvqq
qknq*fqqklemfmkkd*lkni*iqmvksqqpvnh*v*vi*sl*rlekq*sqdqplplvf
qvccncfkmngil*cwkpsh*nnnmklfvkswhiqcinmmlpve*sld*lkkemlqdll*
qtlvi*ynnnnnkqitttttt---

---sfsrlrcsdqsckrw*ksi*kdlhsi*ihlsirp*s*chryivtcigrlynfiftr*
iieyvrycqwnsfd*lwsisttllh*crlpprwyvfrsryskwcgqnl*sqe*skqfqls
rsfnrcqlylll*ewllfnrsr**hceii*ss*sch*kltrysnhhfg*stn*iyqfrll
*piswcsifqsnqslqlqiktkttnlfysfn*frlfrl*mgktkfkflcnfflf*ky
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE320 (VFE320Q) /CSM/VF/VFE3-A/VFE320Q.Seq.d/                       1396   0.0
FC-AR11 (FC-AR11Q) /CSM/FC/FC-AR/FC-AR11Q.Seq.d/                     1396   0.0
CFC701 (CFC701Q) /CSM/CF/CFC7-A/CFC701Q.Seq.d/                       1396   0.0
AFN532 (AFN532Q) /CSM/AF/AFN5-B/AFN532Q.Seq.d/                       1396   0.0
AFM628 (AFM628Q) /CSM/AF/AFM6-B/AFM628Q.Seq.d/                       1396   0.0
AFH587 (AFH587Q) /CSM/AF/AFH5-D/AFH587Q.Seq.d/                       1396   0.0
VFI741 (VFI741Q) /CSM/VF/VFI7-B/VFI741Q.Seq.d/                       1394   0.0
SFE587 (SFE587Q) /CSM/SF/SFE5-D/SFE587Q.Seq.d/                       1388   0.0
SFD267 (SFD267Q) /CSM/SF/SFD2-C/SFD267Q.Seq.d/                       1388   0.0
CFJ255 (CFJ255Q) /CSM/CF/CFJ2-C/CFJ255Q.Seq.d/                       1382   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...  1396   0.0    1
(C24329) Dictyostelium discoideum gamete cDNA, clone FC-AR11.    1396   0.0    1
(BJ430868) Dictyostelium discoideum cDNA clone:ddv9h05, 3' e...  1396   0.0    1
(BJ374209) Dictyostelium discoideum cDNA clone:ddc6b01, 3' e...  1396   0.0    1
(BJ347171) Dictyostelium discoideum cDNA clone:dda26g08, 3' ...  1396   0.0    1
(BJ345673) Dictyostelium discoideum cDNA clone:dda28o07, 3' ...  1396   0.0    1
(BJ343707) Dictyostelium discoideum cDNA clone:dda16m21, 3' ...  1396   0.0    1
(BJ432286) Dictyostelium discoideum cDNA clone:ddv18b11, 3' ...  1394   0.0    1
(BJ399806) Dictyostelium discoideum cDNA clone:dds7e18, 3' e...  1388   0.0    1
(BJ398087) Dictyostelium discoideum cDNA clone:dds10m21, 3' ...  1388   0.0    1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q7KWK5) RecName: Full=Pre-mRNA-processing factor 19 homolog; Al...   445   e-123
AC146759_31(AC146759|pid:none) Medicago truncatula clone mth2-17...   166   2e-39
BT034088_1(BT034088|pid:none) Zea mays full-length cDNA clone ZM...   163   1e-38
AC022457_10(AC022457|pid:none) Oryza sativa chromosome 10 BAC OS...   162   2e-38
(Q94BR4) RecName: Full=Pre-mRNA-processing factor 19 homolog 1; ...   160   1e-37
AM270324_36(AM270324|pid:none) Aspergillus niger contig An14c017...   158   3e-37
AC002332_11(AC002332|pid:none) Arabidopsis thaliana chromosome 2...   155   3e-36
(O22785) RecName: Full=Pre-mRNA-processing factor 19 homolog 2; ...   155   3e-36
EU417752_1(EU417752|pid:none) Sus scrofa pre-mRNA processing fac...   152   3e-35
EU591959_1(EU591959|pid:none) Sus scrofa PRP19/PSO4 pre-mRNA pro...   152   3e-35
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM628 is

5' end seq. ID AFM628F
5' end seq. 
>AFM628F.Seq
ACCCAAGTGAATTCATAATAATTAAAATTATATGATTTTTGTCGTATATCATTAATCAGT
TCCCACAACATCCATCACAACACACAAACTCATCACCAATCTATCAAATAAACCGATCTT
TTAAACCCTCAACCAAAAAAAACTATCAATTAAAATGATATGTGCAATTTCGGGTTCAAC
AACAGAAGAACCAGTAATTTCAACAAAAACTGGAAATGTTTATGAAAAAAGATTGATTGA
AAAATATATAGATACAAATGGTAAAGAGCCAACAACCGGTGAACCATTAGGTTTGAGTGA
TTTAATCACTGTAAAGATTGGAAAAACAGTAAAGCCAAGACCAACCACTGCCACTAGTAT
TCCAAGTATGTTGCAATTGTTTCAAAATGAATGGGATTCTTTAATGTTGGAAACCTTCAC
ATTGAAACAACAACATGAAACTGTTCGTCAAGAGTTGGCACATTCAATGTATCAATATGA
TGCTGCCTGTAGAGTAATCGCTAGATTAGTTAAAGAAAGAGATGCTGCAAGATCTGCTTT
AGCAAACGCTCGTAATATAGTACAACAACAACAACAACAAACAAATAACAACAACAACAA
CAACAXXXXXXXXXX
Length of 5' end seq. 615
3' end seq. ID AFM628Z
3' end seq. 
>AFM628Z.Seq
XXXXXXXXXXATAGTTTCAGCAGGCTCCGATGCAGTGATCAGAGTTGTAAAAGGTGGTGA
AAGTCCATCTAAAAAGACCTACACTCAATATAAATCCACTTATCAATTCGCCCATAAAGC
TAGTGTCACCGATATATCGTTACATGTATTGGGAGATTATATAATTTCATCTTCACTCGA
TAAATCATTGAATATGTACGATATTGTCAATGGAACTCATTTGACTAGCTTTGGTCAATC
TCAACAACTTTGTTACACTAGTGTCGCCTTCCACCCAGATGGTATGTTTTTCGCAGCCGG
TACTCAAAATGGTGTGGTCAAAATCTTTGATCTCAAGAGTAAAGTAAACAGTTTCAACTT
TCAAGGTCTTTCAACCGCTGTCAATTGTATCTCCTTCTCTGAGAATGGTTACTATTTAAC
CGCAGCCGATAATAACACTGTGAAATTATTTGATCTTCGTAAAGCTGCCACTAAAAACTC
ACCAGATATTCAAACCATCACTTTGGATAATCAACAAATTAAATCTATCAATTTCGATTA
CTCTAGCCAATATCTTGGTGTAGCATCTTCCAATCAAATCAATCTTTACAGTTGCAAATC
AAAACAAAAACCACCAATCTCTTCTATTCATTCAATTGATTCAGATTGTTTAGACTTTAA
ATGGGCAAGACCAAATTCAAATTTCTTTGTAACTTCTTCCTCTTCTAAAAATAT
Length of 3' end seq. 714
Connected seq. ID AFM628P
Connected seq. 
>AFM628P.Seq
ACCCAAGTGAATTCATAATAATTAAAATTATATGATTTTTGTCGTATATCATTAATCAGT
TCCCACAACATCCATCACAACACACAAACTCATCACCAATCTATCAAATAAACCGATCTT
TTAAACCCTCAACCAAAAAAAACTATCAATTAAAATGATATGTGCAATTTCGGGTTCAAC
AACAGAAGAACCAGTAATTTCAACAAAAACTGGAAATGTTTATGAAAAAAGATTGATTGA
AAAATATATAGATACAAATGGTAAAGAGCCAACAACCGGTGAACCATTAGGTTTGAGTGA
TTTAATCACTGTAAAGATTGGAAAAACAGTAAAGCCAAGACCAACCACTGCCACTAGTAT
TCCAAGTATGTTGCAATTGTTTCAAAATGAATGGGATTCTTTAATGTTGGAAACCTTCAC
ATTGAAACAACAACATGAAACTGTTCGTCAAGAGTTGGCACATTCAATGTATCAATATGA
TGCTGCCTGTAGAGTAATCGCTAGATTAGTTAAAGAAAGAGATGCTGCAAGATCTGCTTT
AGCAAACGCTCGTAATATAGTACAACAACAACAACAACAAACAAATAACAACAACAACAA
CAACA----------ATAGTTTCAGCAGGCTCCGATGCAGTGATCAGAGTTGTAAAAGGT
GGTGAAAGTCCATCTAAAAAGACCTACACTCAATATAAATCCACTTATCAATTCGCCCAT
AAAGCTAGTGTCACCGATATATCGTTACATGTATTGGGAGATTATATAATTTCATCTTCA
CTCGATAAATCATTGAATATGTACGATATTGTCAATGGAACTCATTTGACTAGCTTTGGT
CAATCTCAACAACTTTGTTACACTAGTGTCGCCTTCCACCCAGATGGTATGTTTTTCGCA
GCCGGTACTCAAAATGGTGTGGTCAAAATCTTTGATCTCAAGAGTAAAGTAAACAGTTTC
AACTTTCAAGGTCTTTCAACCGCTGTCAATTGTATCTCCTTCTCTGAGAATGGTTACTAT
TTAACCGCAGCCGATAATAACACTGTGAAATTATTTGATCTTCGTAAAGCTGCCACTAAA
AACTCACCAGATATTCAAACCATCACTTTGGATAATCAACAAATTAAATCTATCAATTTC
GATTACTCTAGCCAATATCTTGGTGTAGCATCTTCCAATCAAATCAATCTTTACAGTTGC
AAATCAAAACAAAAACCACCAATCTCTTCTATTCATTCAATTGATTCAGATTGTTTAGAC
TTTAAATGGGCAAGACCAAATTCAAATTTCTTTGTAACTTCTTCCTCTTCTAAAAATAT
Length of connected seq. 1309
Full length Seq ID -
Full length Seq. -
Length of full length seq. -