VFH678 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFH678
Library	VF (Link to library)
Clone ID	VFH678 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16030-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFH6-D/VFH678Q.Seq.d/
Representative seq. ID	VFH678E (Link to Original site)
Representative DNA sequence	>VFH678 (VFH678Q) /CSM/VF/VFH6-D/VFH678Q.Seq.d/ TTTCAAAACAACAATTCATATATAATAAGATAATGGCAGAANCAAAAGTTGCACCAAATC TTACTGGTATTGAGCAAACCAAGGCAGGTCAATCCTTCACTGAAAAATTATCAGCTGAAG CTATGGAATTTTTCTGTAATGTTGCCAAATTACCATTCTCACAACAAGCTGTTCACTTTT TGAATGCTTATTGGGCTGAAGTTAGCAAAGAAGCTGAATTCATCTATTCCGTTGGTTGGG AAACAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGATG AAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTCT GTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATGT TGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGTC GTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGATT TCTGTACTCGTTCAATGAACCACGATGAACATCCAGAAATCAAAAAAGCTCGTTTAGCTC TCGAAGAAGTCAACAAACGTATTCGCGCTTACGAAGAAGAAAAAGCCCGTTTAACCGAAG AATCAAAGATTCCAGGTGTCAAAGGTCTCGGTGCCACAAACATGCTCGCTCAAATTGATA GTGGTCCATTAAAGGAACAACTCAACTTTGCCCTTATCTCTGCTGAAGCTGCTGTTCGTA CTGCTTCAAAGAAATATGGTGGTGCTGCTTATTCAGGTGGTGCTGGTGATGCTGGTGCTG GTTCCTCTGCTGGTGCCATTTGGTGGATGAATCGTNATTTAGAAGAAAAGAAAAAGAGAT ACGGTCCACAAAAGAAATAAATATTCTATTTGCCCGAACAATTTAATTTGTAAAACAGNA
sequence update	2001.11.24
Translated Amino Acid sequence	SKQQFIYNKIMAEXKVAPNLTGIEQTKAGQSFTEKLSAEAMEFFCNVAKLPFSQQAVHFL NAYWAEVSKEAEFIYSVGWETIKYADMHCKGIQLVFKYDEGNDLDFDIALYFYEQLCKFC EDPKNKNYATTYPISQPQMLTALKRKQELREKVDVNFDGRVSFLEYLLYQYKDFANPADF CTRSMNHDEHPEIKKARLALEEVNKRIRAYEEEKARLTEESKIPGVKGLGATNMLAQIDS GPLKEQLNFALISAEAAVRTASKKYGGAAYSGGAGDAGAGSSAGAIWWMNRXLEEKKKRY GPQKKifylpeqfnlnx
Translated Amino Acid sequence (All Frames)	Frame A: fqnnnsyiirwqxqklhqillvlskprqvnpslknyqlklwnfsvmlpnyhshnklftf mliglklakklnssiplvgkqsnmliciakvsnsfsntmkvtiwisillsismnnyans vkiqrtktmqpptqslnhkcllsnvnknekksmsismvvslssnisyintkispiqli svlvqttmniqkskklvlskkstnvfaltkkkkpvpknqrfqvskvsvpqtcslkli vvhrnnstlplsllkllfvllqrnmvvlliqvvlvmlvlvpllvpfggivikkrkrd tvhkrnkysicpnnlicktx Frame B: fkttihi*dngrxksctksywyanqgrsilhkiissygiflccqitilttscslf ecllgsqrsihlfrwlgnnqicyalqryptrfqirrrfgfrycslfltimqil rskeqklcnhlpnlsttnvdcsqttrikrksrcqfrwsclfprislisiqrfrqssf lysfneprtsrnqkssfssrrsqqtysrlrrrkspfnrrikdsrcqrsrchkharsn** wsikgttqlcpylcsccsycfkeiwwcclfrwcwcwcwflcwchlvdesxfrrkekei rstkeinilfartifvkq Frame C: SKQQFIYNKIMAEXKVAPNLTGIEQTKAGQSFTEKLSAEAMEFFCNVAKLPFSQQAVHFL NAYWAEVSKEAEFIYSVGWETIKYADMHCKGIQLVFKYDEGNDLDFDIALYFYEQLCKFC EDPKNKNYATTYPISQPQMLTALKRKQELREKVDVNFDGRVSFLEYLLYQYKDFANPADF CTRSMNHDEHPEIKKARLALEEVNKRIRAYEEEKARLTEESKIPGVKGLGATNMLAQIDS GPLKEQLNFALISAEAAVRTASKKYGGAAYSGGAGDAGAGSSAGAIWWMNRXLEEKKKRY GPQKKifylpeqfnl*nx
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFH678 (VFH678Q) /CSM/VF/VFH6-D/VFH678Q.Seq.d/ 1887 0.0 SHK572 (SHK572Q) /CSM/SH/SHK5-C/SHK572Q.Seq.d/ 1846 0.0 SHD143 (SHD143Q) /CSM/SH/SHD1-B/SHD143Q.Seq.d/ 1846 0.0 VSI777 (VSI777Q) /CSM/VS/VSI7-D/VSI777Q.Seq.d/ 1828 0.0 VSD421 (VSD421Q) /CSM/VS/VSD4-A/VSD421Q.Seq.d/ 1810 0.0 SFF690 (SFF690Q) /CSM/SF/SFF6-D/SFF690Q.Seq.d/ 1707 0.0 VHE736 (VHE736Q) /CSM/VH/VHE7-B/VHE736Q.Seq.d/ 1570 0.0 VHA660 (VHA660Q) /CSM/VH/VHA6-C/VHA660Q.Seq.d/ 1400 0.0 VFM761 (VFM761Q) /CSM/VF/VFM7-C/VFM761Q.Seq.d/ 1179 0.0 SHI591 (SHI591Q) /CSM/SH/SHI5-D/SHI591Q.Seq.d/ 1178 0.0
own update	2002.12.17
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N M58022\|M58022.1 Dictyostelium 30,000 dalton actin bundling protein mRNA, complete cds. 1816 0.0 1 Z50156\|Z50156.1 D.discoideum gene for 34 kD actin binding protein. 1675 0.0 2 U32112\|U32112.1 Dictyostelium discoideum 34 kDa actin binding protein gene, complete cds. 1675 0.0 2 BQ762314\|BQ762314.1 EBro01_SQ005_O08 _R root, 3 week, hydroponic grown, no treatment, cv Optic, EBro01 Hordeum vulgare cDNA clone EBro01_SQ005_O08 5', mRNA sequence. 127 1e-30 3 L08067\|L08067.1 Physarum polycephalum actin bundling protein, 3' end. 42 2e-06 4 CF431929\|CF431929.1 NIT1_11_A09.g1_A002 Nitrogen-deficient seedlings Sorghum bicolor cDNA clone NIT1_11_A09_A002 5', mRNA sequence. 56 0.001 1 X73390\|X73390.1 H.influenzae (3224A) gene for MOMP P2. 42 0.003 2 AC127682\|AC127682.2 Mus musculus chromosome UNK clone RP24-170O17, WORKING DRAFT SEQUENCE, 9 unordered pieces. 46 0.005 8 AC018884\|AC018884.6 Homo sapiens BAC clone RP11-369I16 from 4, complete sequence. 34 0.044 10 C72421\|C72421.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (E1588_1A). 36 0.096 2
dna update	2004. 2.21
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P24005) RecName: Full=Calcium-regulated actin-bundling protein;... 536 e-151 CP000568_548(CP000568\|pid:none) Clostridium thermocellum ATCC 27... 37 1.3 AC025716_1(AC025716\|pid:none) Caenorhabditis elegans cosmid Y39G... 36 1.7 AF397903_1(AF397903\|pid:none) Pisum sativum AAA-metalloprotease ... 36 2.2 AC135467_32(AC135467\|pid:none) Medicago truncatula clone mth2-34... 35 5.0 CP000361_1110(CP000361\|pid:none) Arcobacter butzleri RM4018, com... 35 5.0 BX571662_94(BX571662\|pid:none) Wolinella succinogenes, complete ... 35 5.0 AM910992_278(AM910992\|pid:none) Plasmodium knowlesi strain H chr... 34 6.5 CP000932_97(CP000932\|pid:none) Campylobacter lari RM2100, comple... 34 8.5 BX294149_235(BX294149\|pid:none) Rhodopirellula baltica SH 1 comp... 34 8.5
protein update	2009. 3. 8
PSORT	psg: 0.71 gvh: 0.52 alm: 0.48 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00 nuc: 0.07 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 48.0 %: cytoplasmic 44.0 %: nuclear 8.0 %: mitochondrial >> prediction for VFH678 is cyt
5' end seq. ID	VFH678F
5' end seq.	>VFH678F.Seq TTTCAAAACAACAATTCATATATAATAAGATAATGGCAGAANCAAAAGTTGCACCAAATC TTACTGGTATTGAGCAAACCAAGGCAGGTCAATCCTTCACTGAAAAATTATCAGCTGAAG CTATGGAATTTTTCTGTAATGTTGCCAAATTACCATTCTCACAACAAGCTGTTCACTTTT TGAATGCTTATTGGGCTGAAGTTAGCAAAGAAGCTGAATTCATCTATTCCGTTGGTTGGG AAACAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGATG AAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTCT GTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATGT TGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGTC GTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGATT TCTGTACTCGTTCAATGAACCACGATGAACATCCAGANNNNNNNNNN
Length of 5' end seq.	587
3' end seq. ID	VFH678Z
3' end seq.	>VFH678Z.Seq NNNNNNNNNNCAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAA TACGATGAAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGC AAATTCTGTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCA CAAATGTTGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTC GATGGTCGTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCA GCTGATTTCTGTACTCGTTCAATGAACCACGATGAACATCCAGAAATCAAAAAAGCTCGT TTAGCTCTCGAAGAAGTCAACAAACGTATTCGCGCTTACGAAGAAGAAAAAGCCCGTTTA ACCGAAGAATCAAAGATTCCAGGTGTCAAAGGTCTCGGTGCCACAAACATGCTCGCTCAA ATTGATAGTGGTCCATTAAAGGAACAACTCAACTTTGCCCTTATCTCTGCTGAAGCTGCT GTTCGTACTGCTTCAAAGAAATATGGTGGTGCTGCTTATTCAGGTGGTGCTGGTGATGCT GGTGCTGGTTCCTCTGCTGGTGCCATTTGGTGGATGAATCGTNATTTAGAAGAAAAGAAA AAGAGATACGGTCCACAAAAGAAATAAATATTCTATTTGCCCGAACAATTTAATTTGTAA AACAGNA
Length of 3' end seq.	727
Connected seq. ID	VFH678P
Connected seq.	>VFH678P.Seq TTTCAAAACAACAATTCATATATAATAAGATAATGGCAGAANCAAAAGTTGCACCAAATC TTACTGGTATTGAGCAAACCAAGGCAGGTCAATCCTTCACTGAAAAATTATCAGCTGAAG CTATGGAATTTTTCTGTAATGTTGCCAAATTACCATTCTCACAACAAGCTGTTCACTTTT TGAATGCTTATTGGGCTGAAGTTAGCAAAGAAGCTGAATTCATCTATTCCGTTGGTTGGG AAACAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGATG AAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTCT GTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATGT TGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGTC GTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGATT TCTGTACTCGTTCAATGAACCACGATGAACATCCAGA----------CAATCAAATATGC TGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGATGAAGGTAACGATTTGGA TTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTCTGTGAAGATCCAAAGAA CAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATGTTGACTGCTCTCAAACG TAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGTCGTGTCTCTTTCCTCGA ATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGATTTCTGTACTCGTTCAAT GAACCACGATGAACATCCAGAAATCAAAAAAGCTCGTTTAGCTCTCGAAGAAGTCAACAA ACGTATTCGCGCTTACGAAGAAGAAAAAGCCCGTTTAACCGAAGAATCAAAGATTCCAGG TGTCAAAGGTCTCGGTGCCACAAACATGCTCGCTCAAATTGATAGTGGTCCATTAAAGGA ACAACTCAACTTTGCCCTTATCTCTGCTGAAGCTGCTGTTCGTACTGCTTCAAAGAAATA TGGTGGTGCTGCTTATTCAGGTGGTGCTGGTGATGCTGGTGCTGGTTCCTCTGCTGGTGC CATTTGGTGGATGAATCGTNATTTAGAAGAAAAGAAAAAGAGATACGGTCCACAAAAGAA ATAAATATTCTATTTGCCCGAACAATTTAATTTGTAAAACAGNA
Length of connected seq.	1294
Full length Seq ID	VFH678E
Full length Seq.	>VFH678E.Seq TTTCAAAACAACAATTCATATATAATAAGATAATGGCAGAANCAAAAGTTGCACCAAATC TTACTGGTATTGAGCAAACCAAGGCAGGTCAATCCTTCACTGAAAAATTATCAGCTGAAG CTATGGAATTTTTCTGTAATGTTGCCAAATTACCATTCTCACAACAAGCTGTTCACTTTT TGAATGCTTATTGGGCTGAAGTTAGCAAAGAAGCTGAATTCATCTATTCCGTTGGTTGGG AAACAATCAAATATGCTGATATGCATTGCAAAGGTATCCAACTCGTTTTCAAATACGATG AAGGTAACGATTTGGATTTCGATATTGCTCTCTATTTCTATGAACAATTATGCAAATTCT GTGAAGATCCAAAGAACAAAAACTATGCAACCACCTACCCAATCTCTCAACCACAAATGT TGACTGCTCTCAAACGTAAACAAGAATTAAGAGAAAAAGTCGATGTCAATTTCGATGGTC GTGTCTCTTTCCTCGAATATCTCTTATATCAATACAAAGATTTCGCCAATCCAGCTGATT TCTGTACTCGTTCAATGAACCACGATGAACATCCAGAAATCAAAAAAGCTCGTTTAGCTC TCGAAGAAGTCAACAAACGTATTCGCGCTTACGAAGAAGAAAAAGCCCGTTTAACCGAAG AATCAAAGATTCCAGGTGTCAAAGGTCTCGGTGCCACAAACATGCTCGCTCAAATTGATA GTGGTCCATTAAAGGAACAACTCAACTTTGCCCTTATCTCTGCTGAAGCTGCTGTTCGTA CTGCTTCAAAGAAATATGGTGGTGCTGCTTATTCAGGTGGTGCTGGTGATGCTGGTGCTG GTTCCTCTGCTGGTGCCATTTGGTGGATGAATCGTNATTTAGAAGAAAAGAAAAAGAGAT ACGGTCCACAAAAGAAATAAATATTCTATTTGCCCGAACAATTTAATTTGTAAAACAGNA
Length of full length seq.	960

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas