AFM621
Library AF
(Link to library)
Clone ID AFM621
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM621 (AFM621Q) /CSM/AF/AFM6-A/AFM621Q.Seq.d/
XXXXXXXXXXTAGTTGATTGCTCTGGTCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTA
ATGAATAATGCATTTGATTATATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTAT
CCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACC
ATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAA
CATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCT
GGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTT
GGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATT
GTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTT
AGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATA
AAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGC
TCTTATCCACTTGCCTAGANNTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATC
TAGTAACCCGAAAATGCNCTATNTA
sequence update 2009. 4. 3
Translated Amino Acid sequence
---VDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATI
KGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVG
YGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIK
GYILMSKDRKNNCGIASVSSYPLA*xygskmnrrmfgsi**penalx


Translated Amino Acid sequence (All Frames)
Frame A:
---s*llwsrrklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh
*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscw
lwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgyk
rlhfnvkg*ke*lwycis*llstclxxwfqne*envwiylvtrkcxx


Frame B:
---VDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATI
KGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVG
YGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIK
GYILMSKDRKNNCGIASVSSYPLA*xygskmnrrmfgsi**penalx


Frame C:
---lialvqkktlvvmvv**imhliislktrvltlkvvihillklvqhvysinlilvqpl
kvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*llv
mvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*k
vtf*cqrieriivvlhqlalihlprxmvpk*igecldlssnpkmxyx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM621 (AFM621Q) /CSM/AF/AFM6-A/AFM621Q.Seq.d/ 1314 0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/ 1294 0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/ 1294 0.0
AFO852 (AFO852Q) /CSM/AF/AFO8-C/AFO852Q.Seq.d/ 1294 0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/ 1292 0.0
AFM502 (AFM502Q) /CSM/AF/AFM5-A/AFM502Q.Seq.d/ 1292 0.0
AFK758 (AFK758Q) /CSM/AF/AFK7-C/AFK758Q.Seq.d/ 1292 0.0
AFK761 (AFK761Q) /CSM/AF/AFK7-C/AFK761Q.Seq.d/ 1283 0.0
CFK280 (CFK280Q) /CSM/CF/CFK2-D/CFK280Q.Seq.d/ 1281 0.0
SFK650 (SFK650Q) /CSM/SF/SFK6-C/SFK650Q.Seq.d/ 1273 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ347103) Dictyostelium discoideum cDNA clone:dda26i06, 3' ... 1314 0.0 1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina... 1294 0.0 1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462. 1294 0.0 1
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524. 1294 0.0 1
(BJ376299) Dictyostelium discoideum cDNA clone:ddc21o20, 3' ... 1294 0.0 1
(BJ346328) Dictyostelium discoideum cDNA clone:dda30h14, 3' ... 1294 0.0 1
(BJ347067) Dictyostelium discoideum cDNA clone:dda26c01, 3' ... 1292 0.0 1
(BJ346339) Dictyostelium discoideum cDNA clone:dda30j13, 3' ... 1292 0.0 1
(BJ343263) Dictyostelium discoideum cDNA clone:dda22d15, 3' ... 1292 0.0 1
(BJ343294) Dictyostelium discoideum cDNA clone:dda22j15, 3' ... 1283 0.0 1
dna update 2009. 4.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 401 e-111
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 214 1e-54
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 214 1e-54
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 203 3e-51
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ... 199 5e-50
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 199 8e-50
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li... 197 2e-49
DQ000609_1(DQ000609|pid:none) Globodera pallida cathepsin L-like... 194 3e-48
AY999065_1(AY999065|pid:none) Globodera pallida cathepsin L-like... 194 3e-48
BT057383_1(BT057383|pid:none) Salmo salar clone ssal-evf-519-083... 192 1e-47
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM621 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM621Z
3' end seq.
>AFM621Z.Seq
XXXXXXXXXXTAGTTGATTGCTCTGGTCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTA
ATGAATAATGCATTTGATTATATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTAT
CCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACC
ATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAA
CATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCT
GGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTT
GGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATT
GTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTT
AGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATA
AAAGGTTACATTTTAATGTCAAAGGATAGAAAGAATAATTGTGGTATTGCATCAGTTAGC
TCTTATCCACTTGCCTAGANNTATGGTTCCAAAATGAATAGGAGAATGTTTGGATCTATC
TAGTAACCCGAAAATGCNCTATNTA
Length of 3' end seq. 685
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -