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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFH573
Library VF
(Link to library)
Clone ID VFH573
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VFH573P
(Link to Original site)
Representative DNA sequence 
>VFH573 (VFH573Q) /CSM/VF/VFH5-D/VFH573Q.Seq.d/
ACTGTTGGCCTACTGGGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAAC
GACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAA
ACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACT
CAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAGA
GAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCA
ACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACT
GCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGT
GCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGAT
GTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTAC
AAGAGAGACGXXXXXXXXXXCTGCTGATGTTGGNACTGGTTCAGCTCGTCAATTCNCTGG
TTTAGGNAACTGTATNTNTTCAATNTACAAAAAANACGGTTTAATCGGTTTANACCGTGG
TTTTGGNGTATCTGTCGGAGGTATNTTTGTNTACAAANCTGCTTTNTTTGGNGGTTACGA
NACTGCTAAAGGAATTTTATTAGGTGAAAACAACAANAAAGCTTCATTTTGGGCTTCATG
GGGNATCGCNCAAGTTGTCNCTACCATCGCTGGNGTAGTCAGCTACCCATTNGANACTGT
TNGTAAAANAATNATNANGCAANCCGGTCGNGCTGANATTCTTTATTCAAGCNCTTGGGA
TTGTTGGGTAAANATTGCCNCCCGTGAAGGNCCAACTGCCTTCTTCAAAGGNGCTTTATC
AAANGCCANCAAAGGNTCAGGTGGNGCNTTAGTTTTAGTTATTTATGATGAAANCCNAAA
ACNTATGGGTTTTGAAGGTGGNGTTGGTTCTGAANAANAAAANCCNCAAAAAAAAAAACA
GGATTTTAACTAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTAAAAAAAAAT
ACTAAAAAAAAA
sequence update 2001.11.22
Translated Amino Acid sequence 
TVGLLGSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSAST
QIAADKQYKGIVDCFVRVSREQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHT
AKENPTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIY
KRD---

---ADVGTGSARQFXGLGNCXXSXYKKXGLIGLXRGFGVSVGGXFVYKXAXFGGYXTAKG
ILLGENNXKASFWASWGIAQVVXTIAGVVSYPXXTVXKXXXXQXGRAXILYSSXWDCWVX
IAXREGPTAFFKGALSXAXKGSGGALVLVIYDEXXKXMGFEGGVGSEXXXPQKKKQDFN*
kkkht*nik*nf*kkilkk
Translated Amino Acid sequence (All Frames) 
Frame A:
TVGLLGSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSAST
QIAADKQYKGIVDCFVRVSREQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHT
AKENPTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIY
KRD---

---llmlxlvqlvnslv*xtvxxqxtkxtv*svxtvvlxylsevxlxtxllxlxvtxllk
efy*vkttxklhfglhgxsxklslpslx*sathxxlxvkxxxxxpvxlxffiqalgivg*
xlppvkxqlpsskxlyqxpxkxqvxx*f*lfmmkxxnxwvlkvxlvlxxkxxkkknrilt
kkknihei*nktfkkky*kk

Frame B:
llaywvpyiti*lcltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykfnllql
klllinntkvssivllefqenkvsshygevi*pmlldisqlklltlpskintrnsssdtl
lkktqpnfslviyylvvllvqphyslfth*ilpvlv*llmlvlvqlvnslv*vtvslqst
ret---

---c*cwxwfsssixwfrxlyxfnxqkxrfnrfxpwfwxicrryxcxqxcfxwxlrxc*r
nfir*kqqxsfilgfmgxrxscxyhrwxsqlpixxcx*xnxxaxrsx*xslfkxlgllgk
xcxp*rxncllqrxfikxxqrxrwxxsfsyl**xpktygf*rwxwf*xxkxxkkktgf*l
kkktymkykikllkkntkkk

Frame C:
cwptgfhi*lynyv*pkekrrific*rffnrwycrwclknycctn*tc*iiitssicfns
ncc**tiqryrrlfc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqthc
*rkpnqifhw*fiiwwccwcnlitlclpirfcpysfsc*cwywfsssihwfr*lylfnlq
er---

---ADVGTGSARQFXGLGNCXXSXYKKXGLIGLXRGFGVSVGGXFVYKXAXFGGYXTAKG
ILLGENNXKASFWASWGIAQVVXTIAGVVSYPXXTVXKXXXXQXGRAXILYSSXWDCWVX
IAXREGPTAFFKGALSXAXKGSGGALVLVIYDEXXKXMGFEGGVGSEXXXPQKKKQDFN*
kkkht*nik*nf*kkilkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFH573 (VFH573Q) /CSM/VF/VFH5-D/VFH573Q.Seq.d/                       1772   0.0
VFM586 (VFM586Q) /CSM/VF/VFM5-D/VFM586Q.Seq.d/                       1082   0.0
VFM349 (VFM349Q) /CSM/VF/VFM3-C/VFM349Q.Seq.d/                       1053   0.0
VFL550 (VFL550Q) /CSM/VF/VFL5-C/VFL550Q.Seq.d/                       1053   0.0
VHP837 (VHP837Q) /CSM/VH/VHP8-B/VHP837Q.Seq.d/                       1051   0.0
VHL762 (VHL762Q) /CSM/VH/VHL7-C/VHL762Q.Seq.d/                       1051   0.0
VHH383 (VHH383Q) /CSM/VH/VHH3-D/VHH383Q.Seq.d/                       1051   0.0
VHH216 (VHH216Q) /CSM/VH/VHH2-A/VHH216Q.Seq.d/                       1051   0.0
VFO617 (VFO617Q) /CSM/VF/VFO6-A/VFO617Q.Seq.d/                       1051   0.0
VFO479 (VFO479Q) /CSM/VF/VFO4-D/VFO479Q.Seq.d/                       1051   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds.  1051   0.0    1
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds.   924   0.0    3
AF480922|AF480922.1 Nyctotherus ovalis from Blaberus sp. var. Duesseldorf ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product.    70   3e-29  4
AF480920|AF480920.1 Nyctotherus ovalis from Periplaneta americana var. Bayer ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product.    78   3e-29  4
BG894033|BG894033.1 kt17c05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-25  3
BG893967|BG893967.1 kt22b03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-25  3
BI323418|BI323418.1 kt71a10.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-25  3
BG894099|BG894099.1 kt18c03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-25  3
BG893792|BG893792.1 kt15d04.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   7e-25  3
BI397208|BI397208.1 kt58d01.y3 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92   8e-25  3
dna update 2004. 1.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr...   334   3e-90
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03...   249   1e-64
BC061600_1(BC061600|pid:none) Xenopus tropicalis solute carrier ...   233   1e-59
AF480919_1(AF480919|pid:none) Nyctotherus ovalis from Periplanet...   232   2e-59
AF480921_1(AF480921|pid:none) Nyctotherus ovalis from Blaberus s...   231   3e-59
AF401758_1(AF401758|pid:none) Ethmostigmus rubripes ADP-ATP tran...   230   8e-59
BC067329_1(BC067329|pid:none) Danio rerio solute carrier family ...   229   1e-58
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden...   229   2e-58
AB183682_1(AB183682|pid:none) Takifugu rubripes ANTs254 mRNA for...   228   3e-58
AF480922_1(AF480922|pid:none) Nyctotherus ovalis from Blaberus s...   228   3e-58
protein update 2009. 6.21
PSORT 

 psg: 0.91  gvh: 0.58  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for VFH573 is cyt
5' end seq. ID VFH573F
5' end seq. 
>VFH573F.Seq
ACTGTTGGCCTACTGGGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAAC
GACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAA
ACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACT
CAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAGA
GAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCA
ACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACT
GCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGT
GCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGAT
GTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTAC
AAGAGAGACGNNNNNNNNNN
Length of 5' end seq. 560
3' end seq. ID VFH573Z
3' end seq. 
>VFH573Z.Seq
NNNNNNNNNNCTGCTGATGTTGGNACTGGTTCAGCTCGTCAATTCNCTGGTTTAGGNAAC
TGTATNTNTTCAATNTACAAAAAANACGGTTTAATCGGTTTANACCGTGGTTTTGGNGTA
TCTGTCGGAGGTATNTTTGTNTACAAANCTGCTTTNTTTGGNGGTTACGANACTGCTAAA
GGAATTTTATTAGGTGAAAACAACAANAAAGCTTCATTTTGGGCTTCATGGGGNATCGCN
CAAGTTGTCNCTACCATCGCTGGNGTAGTCAGCTACCCATTNGANACTGTTNGTAAAANA
ATNATNANGCAANCCGGTCGNGCTGANATTCTTTATTCAAGCNCTTGGGATTGTTGGGTA
AANATTGCCNCCCGTGAAGGNCCAACTGCCTTCTTCAAAGGNGCTTTATCAAANGCCANC
AAAGGNTCAGGTGGNGCNTTAGTTTTAGTTATTTATGATGAAANCCNAAAACNTATGGGT
TTTGAAGGTGGNGTTGGTTCTGAANAANAAAANCCNCAAAAAAAAAAACAGGATTTTAAC
TAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTAAAAAAAAATACTAAAAAAA
AA
Length of 3' end seq. 602
Connected seq. ID VFH573P
Connected seq. 
>VFH573P.Seq
ACTGTTGGCCTACTGGGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAAC
GACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAA
ACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACT
CAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAGA
GAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCA
ACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACT
GCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGT
GCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGAT
GTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTAC
AAGAGAGACG----------CTGCTGATGTTGGNACTGGTTCAGCTCGTCAATTCNCTGG
TTTAGGNAACTGTATNTNTTCAATNTACAAAAAANACGGTTTAATCGGTTTANACCGTGG
TTTTGGNGTATCTGTCGGAGGTATNTTTGTNTACAAANCTGCTTTNTTTGGNGGTTACGA
NACTGCTAAAGGAATTTTATTAGGTGAAAACAACAANAAAGCTTCATTTTGGGCTTCATG
GGGNATCGCNCAAGTTGTCNCTACCATCGCTGGNGTAGTCAGCTACCCATTNGANACTGT
TNGTAAAANAATNATNANGCAANCCGGTCGNGCTGANATTCTTTATTCAAGCNCTTGGGA
TTGTTGGGTAAANATTGCCNCCCGTGAAGGNCCAACTGCCTTCTTCAAAGGNGCTTTATC
AAANGCCANCAAAGGNTCAGGTGGNGCNTTAGTTTTAGTTATTTATGATGAAANCCNAAA
ACNTATGGGTTTTGAAGGTGGNGTTGGTTCTGAANAANAAAANCCNCAAAAAAAAAAACA
GGATTTTAACTAAAAAAAAAAACATACATGAAATATAAAATAAAACTTTTAAAAAAAAAT
ACTAAAAAAAAA
Length of connected seq. 1142
Full length Seq ID -
Full length Seq. -
Length of full length seq. -