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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM610
Library AF
(Link to library)
Clone ID AFM610
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM610P
(Link to Original site)
Representative DNA sequence 
>AFM610 (AFM610Q) /CSM/AF/AFM6-A/AFM610Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTTAAAAAAAAAAAANCAAAAAA
AAAAXXXXXXXXXXCCANATTTCCATAAATGTGTTTAAAAACGTGGNGGNATNTTAAGNT
GNGAATTTNANCCCCCAANACAACCNANATCCCTTGATTGGGCTNAAAATGAAAATNATG
ATNGTGACTNTNATGATCGNGNCTATNATGATGATGAANATGATGGNGATTATNANGGCC
GNGACGGTGACTATGATGGNGATTATNATGGNGATTATNATGATGNCAATTNTTATGG
sequence update 2009. 4. 3
Translated Amino Acid sequence 
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNFKKKKXKKK---

---XISINVFKNVXXX*xxnxxpqxnxxpliglkmkxmxvtxmixxxmmmxmmxixxaxt
vtmmxixmxixmmxixm
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvfcsysn*isiqlkkvkikfvksicnkn**f*kkkxkkk---

---pxfhkcv*krggxlxxefxppxqpxsldwaxnenxdxdxxdrxyxddexdgdyxgrd
gdydgdyxgdyxdxnxy

Frame B:
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNFKKKKXKKK---

---XISINVFKNVXXX*xxnxxpqxnxxpliglkmkxmxvtxmixxxmmmxmmxixxaxt
vtmmxixmxixmmxixm

Frame C:
csilfifklnintikks*n*ickinl*qklvilkkkxqkk---

---xfp*mclktwxxxkxxixxpxttxip*lgxk*kx*x*lx*sxlx***x*wxlxxpxr
*l*wxlxwxlx*xqxlw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM610 (AFM610Q) /CSM/AF/AFM6-A/AFM610Q.Seq.d/                        266   2e-70
CFF819 (CFF819Q) /CSM/CF/CFF8-A/CFF819Q.Seq.d/                        240   1e-62
AFH486 (AFH486Q) /CSM/AF/AFH4-D/AFH486Q.Seq.d/                        240   1e-62
AFD169 (AFD169Q) /CSM/AF/AFD1-C/AFD169Q.Seq.d/                        240   1e-62
SFG253 (SFG253Q) /CSM/SF/SFG2-C/SFG253Q.Seq.d/                        238   5e-62
CHB150 (CHB150Q) /CSM/CH/CHB1-C/CHB150Q.Seq.d/                        238   5e-62
AFJ458 (AFJ458Q) /CSM/AF/AFJ4-C/AFJ458Q.Seq.d/                        238   5e-62
AFF284 (AFF284Q) /CSM/AF/AFF2-D/AFF284Q.Seq.d/                        238   5e-62
CFH605 (CFH605Q) /CSM/CF/CFH6-A/CFH605Q.Seq.d/                        236   2e-61
CFG252 (CFG252Q) /CSM/CF/CFG2-C/CFG252Q.Seq.d/                        236   2e-61
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347070) Dictyostelium discoideum cDNA clone:dda26c04, 3' ...    94   4e-15  1
(BJ401387) Dictyostelium discoideum cDNA clone:dds23g06, 3' ...    88   3e-13  1
(BJ343478) Dictyostelium discoideum cDNA clone:dda16p02, 3' ...    88   3e-13  1
(BJ342778) Dictyostelium discoideum cDNA clone:dda1e15, 3' e...    88   3e-13  1
(X51892) Dictyostelium discoideum SP60 gene for spore coat p...    62   5e-13  2
(BJ401988) Dictyostelium discoideum cDNA clone:dds20f02, 3' ...    82   2e-11  1
(BJ375336) Dictyostelium discoideum cDNA clone:ddc18g12, 3' ...    82   2e-11  1
(BJ373758) Dictyostelium discoideum cDNA clone:ddc4i24, 3' e...    82   2e-11  1
(BJ373051) Dictyostelium discoideum cDNA clone:ddc15c15, 3' ...    82   2e-11  1
(BJ372230) Dictyostelium discoideum cDNA clone:ddc11d21, 3' ...    82   2e-11  1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    64   1e-09
(Q8MP30) RecName: Full=Uncharacterized histidine-rich protein DD...    48   1e-04
(P04929) Histidine-rich glycoprotein precursor.  &KGZQHL(A22692)...    45   8e-04
(O31510) RecName: Full=Spore coat protein yeeK;  &Z99107_120(Z99...    45   0.001
AE014297_1244(AE014297|pid:none) Drosophila melanogaster chromos...    42   0.006
CP000001_4445(CP000001|pid:none) Bacillus cereus E33L, complete ...    42   0.008
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    42   0.008
EF026246_1(EF026246|pid:none) Steinernema carpocapsae Ahn-4 mRNA...    41   0.011
CP001186_4753(CP001186|pid:none) Bacillus cereus G9842, complete...    41   0.011
AM942759_37(AM942759|pid:none) Proteus mirabilis strain HI4320, ...    41   0.014
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM610 is

5' end seq. ID AFM610F
5' end seq. 
>AFM610F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTTAAAAAAAAAAAANCAAAAAA
AAAAXXXXXXXXXX
Length of 5' end seq. 134
3' end seq. ID AFM610Z
3' end seq. 
>AFM610Z.Seq
XXXXXXXXXXCCANATTTCCATAAATGTGTTTAAAAACGTGGNGGNATNTTAAGNTGNGA
ATTTNANCCCCCAANACAACCNANATCCCTTGATTGGGCTNAAAATGAAAATNATGATNG
TGACTNTNATGATCGNGNCTATNATGATGATGAANATGATGGNGATTATNANGGCCGNGA
CGGTGACTATGATGGNGATTATNATGGNGATTATNATGATGNCAATTNTTATGG
Length of 3' end seq. 234
Connected seq. ID AFM610P
Connected seq. 
>AFM610P.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTTAAAAAAAAAAAANCAAAAAA
AAAA----------CCANATTTCCATAAATGTGTTTAAAAACGTGGNGGNATNTTAAGNT
GNGAATTTNANCCCCCAANACAACCNANATCCCTTGATTGGGCTNAAAATGAAAATNATG
ATNGTGACTNTNATGATCGNGNCTATNATGATGATGAANATGATGGNGATTATNANGGCC
GNGACGGTGACTATGATGGNGATTATNATGGNGATTATNATGATGNCAATTNTTATGG
Length of connected seq. 348
Full length Seq ID -
Full length Seq. -
Length of full length seq. -