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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM609
Library AF
(Link to library)
Clone ID AFM609
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM609P
(Link to Original site)
Representative DNA sequence 
>AFM609 (AFM609Q) /CSM/AF/AFM6-A/AFM609Q.Seq.d/
CAGATGTAATACCAACAATGAAATATTGTACAGTTGCAGAGACTAGAAAAGCCGTTGAAT
TCGCCAATGGTTCAAAATGCATCAAAGAGAATACCCCAATTCTAGAGGAGACATGTAAAC
TTCGTTTTGAAGCTGCTCAACTCTTGGGTTTCAAAGACTGGGCTTCCTATAAATCAAATT
ATCTCATGGTTAAGTCAAATGATAACATTCAATCCTTTGAAGAGAGAATGAGAAAGTTAT
TAACCCCACATGCTGTCACAGAGTATGACAGATTGAAACAACTCAAAAAGAAGATTTACC
TCGAAAAAGGTGGCAACCCAGAAACCTATGACGATCATTACTACTCCTATGATAATGCTT
TCTACAATAATGTTATGTTGGTCCAAGATTATCAAGTTGATAATAATTTAGTCAAAGAGT
ATTTCCCATTCGAAGTTGTCATTAAGGGTATTTTCAATTGTTATCAAGAACTCTTGAATG
TTAAATTCACAGAGGTACCAGCCTACCAACCATGGCATGAAGAAGTTAAAATGTATTCAT
GTGTTGATACAGCAGATTCTAATAAATTGTTAGGTCATTTCTATATTGATTTATTCCCAC
GTGAGGGTAAATATTCTCATGCTGCAGTATGXXXXXXXXXXCCACTCCCATCATTATTAA
CCCATGATGAGGTTGTCACTTTTTTCCATGAATTTGGTCATGTTATGCATAATATGTCTA
CCAAAGTTCATTATTCAATGTTTAGTGGTACAAGTGTAGAAAGAGATTTTGTTGAATGTC
CAAGTCAGTTATTTGAATTTTGGTGTTGGAATAAAGATGTACTCGTCAATAAATTATCTG
GTCACTATAAAGATCATTCAAAGAAATTACCAACTGATTTAGTTGAAAGAATGATTGCTG
CAAAGAATTTAAATGTTGCCATCTTTTATCTTCGTCAAATTCAATTAGCTCTCTTTGATA
ATGCTATTCATAGTGGTAATCCTGCAAACTTTACCAATACTGCTGATCTTTATCATCGTA
TTGCAACTGATGTAGCTCTTAATCCAAATCAAAAAGGTACTAATCCAGGTTGTTCATTTG
GTCATTTATTAGGTGGTTATGATGCTCAATATTATTCATATCTTTATTCTGAATGTTTCT
GTGCTAGTATCTTTGAAATTTTCGATAAACATGGTGTTATGAATAAGGAATTAGGTGCTA
GACTTCGTAATCAAGTTTTGGCTGTTGGTGGTTCACAACCAAGTAGTGAAACTATTGAAA
ACTTTTTAGGTAGCAAACCAAATGAAGCTGCTTTCTTAAAAACTATGGTCTTTAAATAAA
CNAAAACTATTTTTTT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
DVIPTMKYCTVAETRKAVEFANGSKCIKENTPILEETCKLRFEAAQLLGFKDWASYKSNY
LMVKSNDNIQSFEERMRKLLTPHAVTEYDRLKQLKKKIYLEKGGNPETYDDHYYSYDNAF
YNNVMLVQDYQVDNNLVKEYFPFEVVIKGIFNCYQELLNVKFTEVPAYQPWHEEVKMYSC
VDTADSNKLLGHFYIDLFPREGKYSHAAV---

---PLPSLLTHDEVVTFFHEFGHVMHNMSTKVHYSMFSGTSVERDFVECPSQLFEFWCWN
KDVLVNKLSGHYKDHSKKLPTDLVERMIAAKNLNVAIFYLRQIQLALFDNAIHSGNPANF
TNTADLYHRIATDVALNPNQKGTNPGCSFGHLLGGYDAQYYSYLYSECFCASIFEIFDKH
GVMNKELGARLRNQVLAVGGSQPSSETIENFLGSKPNEAAFLKTMVFK*tktif
Translated Amino Acid sequence (All Frames) 
Frame A:
qm*yqq*nivqlqrlekplnspmvqnaskripqf*rrhvnfvlkllnswvsktglpinqi
iswlsqmitfnplkre*esy*phmlsqsmtd*nnskrrftskkvatqkpmtiittpmiml
stimlcwskiikliii*sksishsklslrvfsivikns*mlnsqryqptnhgmkklkcih
vliqqilinc*visiliyshvrvnilmlqy---

---PLPSLLTHDEVVTFFHEFGHVMHNMSTKVHYSMFSGTSVERDFVECPSQLFEFWCWN
KDVLVNKLSGHYKDHSKKLPTDLVERMIAAKNLNVAIFYLRQIQLALFDNAIHSGNPANF
TNTADLYHRIATDVALNPNQKGTNPGCSFGHLLGGYDAQYYSYLYSECFCASIFEIFDKH
GVMNKELGARLRNQVLAVGGSQPSSETIENFLGSKPNEAAFLKTMVFK*tktif

Frame B:
rcntnneilyscrd*ksr*irqwfkmhqreypnsrgdm*tsf*scstlgfqrlgfl*ikl
shg*vk**hsil*renekvinptcchrv*qiettqkedlprkrwqprnl*rsllll**cf
lq*cyvgprlss***fsqrvfpirsch*gyfqllsrtlec*ihrgtslptma*rs*nvfm
c*ysrf**ivrsfly*fipt*g*ifsccsm---

---hshhy*pmmrlslfsmnlvmlciiclpkfiiqclvvqv*keillnvqvsylnfgvgi
kmyssinylvtikiiqrnyqli*lke*llqri*mlpsfifvkfn*lslimlfivvilqtl
pillifiivlqlm*lliqikkvliqvvhlviy*vvmmlniihifilnvsvlvslkfsinm
vl*irn*vldfvikfwllvvhnqvvkllktf*vanqmklls*klwslnkxklff

Frame C:
DVIPTMKYCTVAETRKAVEFANGSKCIKENTPILEETCKLRFEAAQLLGFKDWASYKSNY
LMVKSNDNIQSFEERMRKLLTPHAVTEYDRLKQLKKKIYLEKGGNPETYDDHYYSYDNAF
YNNVMLVQDYQVDNNLVKEYFPFEVVIKGIFNCYQELLNVKFTEVPAYQPWHEEVKMYSC
VDTADSNKLLGHFYIDLFPREGKYSHAAV---

---tpiiinp**gchffp*iwscya*yvyqsslfnv*wykcrkrfc*msksvi*ilvle*
rctrq*iiwsl*rsfkeitn*fs*kndcckefkcchllsssnsissl**cys*w*sckly
qyc*slssycn*css*skskry*srlfiwsfirwl*csilfislf*mflc*yl*nfr*tw
cye*girc*ts*ssfgcwwfttk**ny*klfr*qtk*scflknygl*inxnyff
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM609 (AFM609Q) /CSM/AF/AFM6-A/AFM609Q.Seq.d/                       2569   0.0
VHN641 (VHN641Q) /CSM/VH/VHN6-B/VHN641Q.Seq.d/                       1330   0.0
VHL795 (VHL795Q) /CSM/VH/VHL7-D/VHL795Q.Seq.d/                       1330   0.0
AHQ331 (AHQ331Q) /CSM/AH/AHQ3-B/AHQ331Q.Seq.d/                       1330   0.0
AHQ219 (AHQ219Q) /CSM/AH/AHQ2-A/AHQ219Q.Seq.d/                       1330   0.0
AHF347 (AHF347Q) /CSM/AH/AHF3-B/AHF347Q.Seq.d/                       1330   0.0
VHL422 (VHL422Q) /CSM/VH/VHL4-A/VHL422Q.Seq.d/                       1326   0.0
AFK565 (AFK565Q) /CSM/AF/AFK5-C/AFK565Q.Seq.d/                       1326   0.0
VHC882 (VHC882Q) /CSM/VH/VHC8-D/VHC882Q.Seq.d/                       1322   0.0
AHH305 (AHH305Q) /CSM/AH/AHH3-A/AHH305Q.Seq.d/                       1322   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347058) Dictyostelium discoideum cDNA clone:dda26a04, 3' ...  1358   0.0    1
(BJ445039) Dictyostelium discoideum cDNA clone:ddv58a12, 3' ...  1330   0.0    1
(BJ444018) Dictyostelium discoideum cDNA clone:ddv54n23, 3' ...  1330   0.0    1
(BJ357397) Dictyostelium discoideum cDNA clone:dda63n07, 3' ...  1330   0.0    1
(BJ357287) Dictyostelium discoideum cDNA clone:dda63e06, 3' ...  1330   0.0    1
(BJ350919) Dictyostelium discoideum cDNA clone:dda41n11, 3' ...  1330   0.0    1
(BJ443512) Dictyostelium discoideum cDNA clone:ddv53l06, 3' ...  1326   0.0    1
(BJ343250) Dictyostelium discoideum cDNA clone:dda22a17, 3' ...  1326   0.0    1
(BJ438232) Dictyostelium discoideum cDNA clone:ddv36d22, 3' ...  1322   0.0    1
(BJ351947) Dictyostelium discoideum cDNA clone:dda45j01, 3' ...  1322   0.0    1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT059120_1(BT059120|pid:none) Salmo salar clone ssal-rgf-526-189...   324   4e-87
BC031722_1(BC031722|pid:none) Mus musculus thimet oligopeptidase...   320   5e-86
(P24155) RecName: Full=Thimet oligopeptidase;          EC=3.4.24...   320   9e-86
AB000170_2(AB000170|pid:none) Porcine mRNA for endopeptidase 24....   319   1e-85
(Q02038) RecName: Full=Neurolysin, mitochondrial;          EC=3....   319   1e-85
AF314187_1(AF314187|pid:none) Mus musculus thimet oligopeptidase...   319   2e-85
BC013878_1(BC013878|pid:none) Homo sapiens thimet oligopeptidase...   319   2e-85
(P47788) RecName: Full=Thimet oligopeptidase;          EC=3.4.24...   318   3e-85
BC000583_1(BC000583|pid:none) Homo sapiens thimet oligopeptidase...   318   3e-85
AK300552_1(AK300552|pid:none) Homo sapiens cDNA FLJ56247 complet...   318   3e-85
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM609 is

5' end seq. ID AFM609F
5' end seq. 
>AFM609F.Seq
CAGATGTAATACCAACAATGAAATATTGTACAGTTGCAGAGACTAGAAAAGCCGTTGAAT
TCGCCAATGGTTCAAAATGCATCAAAGAGAATACCCCAATTCTAGAGGAGACATGTAAAC
TTCGTTTTGAAGCTGCTCAACTCTTGGGTTTCAAAGACTGGGCTTCCTATAAATCAAATT
ATCTCATGGTTAAGTCAAATGATAACATTCAATCCTTTGAAGAGAGAATGAGAAAGTTAT
TAACCCCACATGCTGTCACAGAGTATGACAGATTGAAACAACTCAAAAAGAAGATTTACC
TCGAAAAAGGTGGCAACCCAGAAACCTATGACGATCATTACTACTCCTATGATAATGCTT
TCTACAATAATGTTATGTTGGTCCAAGATTATCAAGTTGATAATAATTTAGTCAAAGAGT
ATTTCCCATTCGAAGTTGTCATTAAGGGTATTTTCAATTGTTATCAAGAACTCTTGAATG
TTAAATTCACAGAGGTACCAGCCTACCAACCATGGCATGAAGAAGTTAAAATGTATTCAT
GTGTTGATACAGCAGATTCTAATAAATTGTTAGGTCATTTCTATATTGATTTATTCCCAC
GTGAGGGTAAATATTCTCATGCTGCAGTATGXXXXXXXXXX
Length of 5' end seq. 641
3' end seq. ID AFM609Z
3' end seq. 
>AFM609Z.Seq
XXXXXXXXXXCCACTCCCATCATTATTAACCCATGATGAGGTTGTCACTTTTTTCCATGA
ATTTGGTCATGTTATGCATAATATGTCTACCAAAGTTCATTATTCAATGTTTAGTGGTAC
AAGTGTAGAAAGAGATTTTGTTGAATGTCCAAGTCAGTTATTTGAATTTTGGTGTTGGAA
TAAAGATGTACTCGTCAATAAATTATCTGGTCACTATAAAGATCATTCAAAGAAATTACC
AACTGATTTAGTTGAAAGAATGATTGCTGCAAAGAATTTAAATGTTGCCATCTTTTATCT
TCGTCAAATTCAATTAGCTCTCTTTGATAATGCTATTCATAGTGGTAATCCTGCAAACTT
TACCAATACTGCTGATCTTTATCATCGTATTGCAACTGATGTAGCTCTTAATCCAAATCA
AAAAGGTACTAATCCAGGTTGTTCATTTGGTCATTTATTAGGTGGTTATGATGCTCAATA
TTATTCATATCTTTATTCTGAATGTTTCTGTGCTAGTATCTTTGAAATTTTCGATAAACA
TGGTGTTATGAATAAGGAATTAGGTGCTAGACTTCGTAATCAAGTTTTGGCTGTTGGTGG
TTCACAACCAAGTAGTGAAACTATTGAAAACTTTTTAGGTAGCAAACCAAATGAAGCTGC
TTTCTTAAAAACTATGGTCTTTAAATAAACNAAAACTATTTTTTT
Length of 3' end seq. 705
Connected seq. ID AFM609P
Connected seq. 
>AFM609P.Seq
CAGATGTAATACCAACAATGAAATATTGTACAGTTGCAGAGACTAGAAAAGCCGTTGAAT
TCGCCAATGGTTCAAAATGCATCAAAGAGAATACCCCAATTCTAGAGGAGACATGTAAAC
TTCGTTTTGAAGCTGCTCAACTCTTGGGTTTCAAAGACTGGGCTTCCTATAAATCAAATT
ATCTCATGGTTAAGTCAAATGATAACATTCAATCCTTTGAAGAGAGAATGAGAAAGTTAT
TAACCCCACATGCTGTCACAGAGTATGACAGATTGAAACAACTCAAAAAGAAGATTTACC
TCGAAAAAGGTGGCAACCCAGAAACCTATGACGATCATTACTACTCCTATGATAATGCTT
TCTACAATAATGTTATGTTGGTCCAAGATTATCAAGTTGATAATAATTTAGTCAAAGAGT
ATTTCCCATTCGAAGTTGTCATTAAGGGTATTTTCAATTGTTATCAAGAACTCTTGAATG
TTAAATTCACAGAGGTACCAGCCTACCAACCATGGCATGAAGAAGTTAAAATGTATTCAT
GTGTTGATACAGCAGATTCTAATAAATTGTTAGGTCATTTCTATATTGATTTATTCCCAC
GTGAGGGTAAATATTCTCATGCTGCAGTATG----------CCACTCCCATCATTATTAA
CCCATGATGAGGTTGTCACTTTTTTCCATGAATTTGGTCATGTTATGCATAATATGTCTA
CCAAAGTTCATTATTCAATGTTTAGTGGTACAAGTGTAGAAAGAGATTTTGTTGAATGTC
CAAGTCAGTTATTTGAATTTTGGTGTTGGAATAAAGATGTACTCGTCAATAAATTATCTG
GTCACTATAAAGATCATTCAAAGAAATTACCAACTGATTTAGTTGAAAGAATGATTGCTG
CAAAGAATTTAAATGTTGCCATCTTTTATCTTCGTCAAATTCAATTAGCTCTCTTTGATA
ATGCTATTCATAGTGGTAATCCTGCAAACTTTACCAATACTGCTGATCTTTATCATCGTA
TTGCAACTGATGTAGCTCTTAATCCAAATCAAAAAGGTACTAATCCAGGTTGTTCATTTG
GTCATTTATTAGGTGGTTATGATGCTCAATATTATTCATATCTTTATTCTGAATGTTTCT
GTGCTAGTATCTTTGAAATTTTCGATAAACATGGTGTTATGAATAAGGAATTAGGTGCTA
GACTTCGTAATCAAGTTTTGGCTGTTGGTGGTTCACAACCAAGTAGTGAAACTATTGAAA
ACTTTTTAGGTAGCAAACCAAATGAAGCTGCTTTCTTAAAAACTATGGTCTTTAAATAAA
CNAAAACTATTTTTTT
Length of connected seq. 1326
Full length Seq ID -
Full length Seq. -
Length of full length seq. -