>AFB502 (AFB502Q) /CSM/AF/AFB5-A/AFB502Q.Seq.d/
TAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTT
CTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATT
CAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAG
ATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATT
GGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGT
CTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAAC
TGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGA
TGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGT
TAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGXXXXXXXXXX

krysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLVGSNVR
CNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKVNST
AGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDY---

Frame A:
*kv*y*klknvc*ck*skillw*klhw*ii*iqqr*nckiqqw**me**ihvmfgwfkc*
m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsfkvpsltrsfsmgs*c*ncqqs*fn
cwfi*ndhysips**gclqrw**lcsiansktystrf*nc*pfnsssntyti*l---


Frame B:
krysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLVGSNVR
CNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKVNST
AGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDY---


Frame C:
kgivlkikkcllmqik*nsslvktalvnhlnttkvkl*dstmvingminschvwlvqmld
vtfgsimklilqlqensknwlkavqtmi*pq*mvfqssksyqelfngqlmlklstkliql
lvhmk*pllhtklirllakmvmtlfncqfqnllhqilkllai*qfvkhihhmt---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHL872 (VHL872Q) /CSM/VH/VHL8-C/VHL872Q.Seq.d/                        981   0.0
VHI760 (VHI760Q) /CSM/VH/VHI7-C/VHI760Q.Seq.d/                        981   0.0
VHI219 (VHI219Q) /CSM/VH/VHI2-A/VHI219Q.Seq.d/                        981   0.0
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                        981   0.0
VHG454 (VHG454Q) /CSM/VH/VHG4-C/VHG454Q.Seq.d/                        981   0.0
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                        981   0.0
VHB484 (VHB484Q) /CSM/VH/VHB4-D/VHB484Q.Seq.d/                        981   0.0
VHB309 (VHB309Q) /CSM/VH/VHB3-A/VHB309Q.Seq.d/                        981   0.0
VFN638 (VFN638Q) /CSM/VF/VFN6-B/VFN638Q.Seq.d/                        981   0.0
VFM618 (VFM618Q) /CSM/VF/VFM6-A/VFM618Q.Seq.d/                        981   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.   981  0.0  1
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.   959  0.0  1
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   626  0.0  2
AC060783|AC060783.2 Homo sapiens clone RP11-586E1, WORKING DRAFT SEQUENCE, 45 unordered pieces.    40  0.23  2
AC145214|AC145214.1 Homo sapiens fosmid clone XXFOS-82587F5 from 2, complete sequence.    48  0.26  2
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    40  0.27  5
AC093258|AC093258.2 Homo sapiens chromosome 5 clone RP11-1E3, complete sequence.    46  0.43  1
AG120353|AG120353.1 Pan troglodytes DNA, clone: PTB-129B05.F.     46  0.43  1
AC120782|AC120782.24 Pan troglodytes clone rp43-45g12, complete sequence.    48  0.91  2
AC022629|AC022629.3 Homo sapiens clone RP11-24O13, WORKING DRAFT SEQUENCE, 25 unordered pieces.    48  0.91  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   349   2e-95
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   343   1e-93
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    65   1e-09
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    43   0.004
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ...    37   0.22
CU207366_3569(CU207366|pid:none) Gramella forsetii KT0803 comple...    34   2.5
CP000685_4711(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   4.2
CP000094_133(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c...    32   7.2
BA000037_1947(BA000037|pid:none) Vibrio vulnificus YJ016 DNA, ch...    32   9.4
U69963_1(U69963|pid:none) Canis familiaris delayed rectifier pot...    32   9.4

 psg: 0.77  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for AFB502 is cyt

>AFB502F.Seq
TAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAAATAAAGTAAAATTCTT
CTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAGGTGAAACTGTAAGATT
CAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAG
ATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATT
GGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGT
CTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAAC
TGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGA
TGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGT
TAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATG----------