AFM607
Library AF
(Link to library)
Clone ID AFM607
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM607 (AFM607Q) /CSM/AF/AFM6-A/AFM607Q.Seq.d/
XXXXXXXXXXANNACAAGAAATAAANCAAGANCAATTGAGTCNACAAAAGAATGNTCAAC
AAGANAAGTTGGATCAGGNAAATAATCNCCANCAAGAAGAGTTGAATATACANAATAACC
AAAAACNNAATAGTAACATATCNATTTTAAGACATTGAAGTTGGTTTGGGTCAACAANAT
CAACAACANAATCAACANAATCAACANCAACAACANNATCAACAAGAANATCANCAACAA
NANAATCAACANCAAGCTCATCAANACCANCAACAANATCAACAAGCTCAACAAGCTCAA
CAAGCTCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAAT
CAACAAGCTCAACAAAATCCACAAGCTCAACAAGCTCAACAAAACCAACAAGCTCAACAA
AATCAACAAGAAAAAAACAACAATAAATCAATTCTAAGTATTGAAATTGGAAATAATGCT
GCACAAAAACAAAGTGAAAACTCTAAACAATCTGCTGCAATTCAAACTGATGTAAACGTT
GCCAACAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAAC
AAAGATAATCAAGTAAA
sequence update 2009. 4. 3
Translated Amino Acid sequence
---xkk*xkxn*vxkrmxnkxswirxiixxkks*iyxitknxivtyxf*DIEVGLGQQXQ
QXNQXNQXQQXXQQEXXQQXNQXQAHQXXQQXQQAQQAQQAQQAQQNQQAQQNQQAQQNQ
QAQQNPQAQQAQQNQQAQQNQQEKNNNKSILSIEIGNNAAQKQSENSKQSAAIQTDVNVA
NKQNQENKANQENKANQENKDNQV


Translated Amino Acid sequence (All Frames)
Frame A:
---xqeixqxqlsxqknxqqxkldqxnnxxqeelnixnnqkxnsnisilrh*swfgstxs
ttxstxstxttxstrxsxtxxstxsssxpxtxstsstsstsstsstkstsstkstsstks
tsstkstsstsstkptsstkstrkkqq*insky*nwk*cctktk*kl*ticcnsn*ckrc
qqtkprkqs*srkqs*srkqr*ssk


Frame B:
---xkk*xkxn*vxkrmxnkxswirxiixxkks*iyxitknxivtyxf*DIEVGLGQQXQ
QXNQXNQXQQXXQQEXXQQXNQXQAHQXXQQXQQAQQAQQAQQAQQNQQAQQNQQAQQNQ
QAQQNPQAQQAQQNQQAQQNQQEKNNNKSILSIEIGNNAAQKQSENSKQSAAIQTDVNVA
NKQNQENKANQENKANQENKDNQV


Frame C:
---trnkxrxiestkexstrxvgsgk*spxrrveytx*pktx**hixfktlklvwvnxin
nxinxinxnnxinkxixnxxinxklixtxnxinklnklnklnklnkinklnkinklnkin
klnkihklnklnktnklnkinkkkttinqf*vlkleimlhknkvktlnnllqfklm*tlp
tnktkktklikktklikktkiik*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM607 (AFM607Q) /CSM/AF/AFM6-A/AFM607Q.Seq.d/ 357 1e-97
SFH109 (SFH109Q) /CSM/SF/SFH1-A/SFH109Q.Seq.d/ 349 3e-95
CHJ684 (CHJ684Q) /CSM/CH/CHJ6-D/CHJ684Q.Seq.d/ 349 3e-95
CHI505 (CHI505Q) /CSM/CH/CHI5-A/CHI505Q.Seq.d/ 349 3e-95
CHD296 (CHD296Q) /CSM/CH/CHD2-D/CHD296Q.Seq.d/ 349 3e-95
CFJ782 (CFJ782Q) /CSM/CF/CFJ7-D/CFJ782Q.Seq.d/ 349 3e-95
CFI881 (CFI881Q) /CSM/CF/CFI8-D/CFI881Q.Seq.d/ 349 3e-95
CFE741 (CFE741Q) /CSM/CF/CFE7-B/CFE741Q.Seq.d/ 349 3e-95
AFI696 (AFI696Q) /CSM/AF/AFI6-D/AFI696Q.Seq.d/ 349 3e-95
SFE617 (SFE617Q) /CSM/SF/SFE6-A/SFE617Q.Seq.d/ 343 2e-93

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ347120) Dictyostelium discoideum cDNA clone:dda26m02, 3' ... 240 e-105 2
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 178 7e-74 3
(BJ375448) Dictyostelium discoideum cDNA clone:ddc18b22, 3' ... 178 7e-70 4
(BJ339740) Dictyostelium discoideum cDNA clone:dda10p05, 3' ... 168 9e-68 3
(BJ375982) Dictyostelium discoideum cDNA clone:ddc20a20, 3' ... 178 4e-64 3
(BJ361983) Dictyostelium discoideum cDNA clone:ddc19i18, 5' ... 178 3e-56 3
(BJ388877) Dictyostelium discoideum cDNA clone:dds16j17, 5' ... 178 1e-45 3
(BJ361695) Dictyostelium discoideum cDNA clone:ddc18i07, 5' ... 178 2e-44 2
(BJ400820) Dictyostelium discoideum cDNA clone:dds15a03, 3' ... 178 8e-41 2
(AU033473) Dictyostelium discoideum slug cDNA, clone SLA870. 178 2e-40 1
dna update 2009. 4.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso... 73 5e-12

protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM607 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM607Z
3' end seq.
>AFM607Z.Seq
XXXXXXXXXXANNACAAGAAATAAANCAAGANCAATTGAGTCNACAAAAGAATGNTCAAC
AAGANAAGTTGGATCAGGNAAATAATCNCCANCAAGAAGAGTTGAATATACANAATAACC
AAAAACNNAATAGTAACATATCNATTTTAAGACATTGAAGTTGGTTTGGGTCAACAANAT
CAACAACANAATCAACANAATCAACANCAACAACANNATCAACAAGAANATCANCAACAA
NANAATCAACANCAAGCTCATCAANACCANCAACAANATCAACAAGCTCAACAAGCTCAA
CAAGCTCAACAAGCTCAACAAAATCAACAAGCTCAACAAAATCAACAAGCTCAACAAAAT
CAACAAGCTCAACAAAATCCACAAGCTCAACAAGCTCAACAAAACCAACAAGCTCAACAA
AATCAACAAGAAAAAAACAACAATAAATCAATTCTAAGTATTGAAATTGGAAATAATGCT
GCACAAAAACAAAGTGAAAACTCTAAACAATCTGCTGCAATTCAAACTGATGTAAACGTT
GCCAACAAACAAAACCAAGAAAACAAAGCTAATCAAGAAAACAAAGCTAATCAAGAAAAC
AAAGATAATCAAGTAAA
Length of 3' end seq. 617
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -