AFM606
Library AF
(Link to library)
Clone ID AFM606
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM606P
(Link to Original site)
Representative DNA sequence
>AFM606 (AFM606Q) /CSM/AF/AFM6-A/AFM606Q.Seq.d/
AAGTTTAGAATTAGAAAAGGAAGCACAAGAAAGAGAGAAAAGAAATGAAGAAAGAAAGAA
AGCACGTGAAGAACAACAAAGATTAGCAGCGGAACAAGAGAAAAAAGATGAAGAAGAAAG
ATTAAAAAAACAAAAAGAACGTGAAGAGAGAAGAAAGAAACGTGAGGAAGATGAAAAGAT
TCTAAAGGAAGAGATGGAGAAATTAGAGTCTGATAAAGCAAATAGAATAACATCGCCAAA
AACTCCCACAAGTGGTAGTAGTAGTATAGCATTATCACCATCAACATCATCTTATTCAAT
CTCTGAGAATAGTGGTGGTGATTCATCAACTTCATTATTATCAGCACAAGCAATTTCAGC
CAAAGAAGAAAGAGAGAAAAGAAGAAAAGAATTGGAAGAGGAAGCTAAAAAATTAGAATT
GGAACAACAAAAAATTAGAGAAGAACGTGAAAAAAGAAAAGAAGAAAGAAGATTACAACA
AGAAGAAGAACAAAGAAAACTTCAAGATTTATTAGATAAAAAAGATTCTGAAAAAATTGA
AAAATTAAAACAAGAAGAAAATGAAAAATTAGAAAAAGAAGAAAAAGAGAGAATAGAXXX
XXXXXXXAAAAAGAAAAAGAAGNGAANGATTTGGTTGATAAGCTTGGNAAGGATCGTTTA
GATAAAGATAAAAAAGATAAAGAAGNGAAAGANTTGGCTGATAAACTTNATAAAGAATCT
CAATANAANGAGTTGNNTGAGAAATTAGAGAAAGNGAAAGANTTGGNTGATAAACTTGAA
AANGAACAAAAGGAAAAAGAAGNNAAAGANCGTCAAGAGAAAGANTTGGNTGATAAACTT
GCAAAAGAACAAAAGGANAAAGAAGNGAANGANTTGGNTGATAAATTAGNNAAAGAACGT
CAAGAGAANGANTTGGNTGATAAATTAGAAAAAGAAAAACAAGNNAAAGANTTGGNTGAT
AAATTGGAAAAAGAAAAACAANAANNNGAATCACTTGAAAAATTAGAAAAAGAAAAACAA
GNNAANGANTTGGNTGATAAACTTGCAAAAGAACAAAAAGAAAAAGAAGAAAAAGAAGAA
AAAGAAGAAAAAGAGAAACAAGAAAAAGAAGAAAAAGAAAGAAAAGATAAAGAATTAGCA
GCAGCAGCAGCAGCAGCAGAAACAGAAAAACTTGAAAAAGAACGTTTAGAGAAAGAGAAA
AAAGAATTGGAAGAAAAAGAATTGGCAGAAAAGCTTGAAAAAGAAAAACTTGAAAAAGAA
TTAACTGATAAATTAGAGAAAGAGAAAAAAGAGAAAGAATTAGCAGATAAATTAGAAAAA
GAGAAACAAGATAAAGAAT
sequence update 2009. 4. 3
Translated Amino Acid sequence
SLELEKEAQEREKRNEERKKAREEQQRLAAEQEKKDEEERLKKQKEREERRKKREEDEKI
LKEEMEKLESDKANRITSPKTPTSGSSSIALSPSTSSYSISENSGGDSSTSLLSAQAISA
KEEREKRRKELEEEAKKLELEQQKIREEREKRKEERRLQQEEEQRKLQDLLDKKDSEKIE
KLKQEENEKLEKEEKERI---

---KEKEXXDLVDKLGKDRLDKDKKDKEXKXLADKLXKESQXXELXEKLEKXKXLXDKLE
XEQKEKEXKXRQEKXLXDKLAKEQKXKEXXXLXDKLXKERQEXXLXDKLEKEKQXKXLXD
KLEKEKQXXESLEKLEKEKQXXXLXDKLAKEQKEKEEKEEKEEKEKQEKEEKERKDKELA
AAAAAAETEKLEKERLEKEKKELEEKELAEKLEKEKLEKELTDKLEKEKKEKELADKLEK
EKQDKE


Translated Amino Acid sequence (All Frames)
Frame A:
kfrirkgstrkrekk*rkkest*rttkissgtrekr*rrkikktkrt*rekket*gr*kd
skgrdgeirv**sk*nniaknshkw***ysiitiniilfnl*e*ww*finfiiistsnfs
qrrkrekkkrigrgs*kirigttkn*rrt*kkkrrkkittrrrtkktsrfir*krf*kn*
kiktrrk*kirkrrkrenr---

---kkkkkxxiwlislxriv*ikikkikkxkxwlinxiknlnxxsxxrn*rkxkxwxinl
kxnkrkkkxkxvkrkxwxinlqknkrxkkxxxwxin*xknvkrxxwxin*kkknkxkxwx
inwkkknxxxnhlkn*kkknkxxxwxinlqknkkkkkkkkkkkkkrnkkkkkkkekikn*
qqqqqqqkqknlkknv*rkrkknwkkknwqkslkkknlkkn*lin*rkrkkrkn*qin*k
krnkikn

Frame B:
SLELEKEAQEREKRNEERKKAREEQQRLAAEQEKKDEEERLKKQKEREERRKKREEDEKI
LKEEMEKLESDKANRITSPKTPTSGSSSIALSPSTSSYSISENSGGDSSTSLLSAQAISA
KEEREKRRKELEEEAKKLELEQQKIREEREKRKEERRLQQEEEQRKLQDLLDKKDSEKIE
KLKQEENEKLEKEEKERI---

---krkrxexfg**awxgsfr*r*kr*rxerxg**tx*risixxvx*eirexerxg**t*
kxtkgkrxxrxsrerxg**tckrtkgxrxexxg**ixxrtsrexxg**irkrktxxrxg*
*igkrktxxxit*kirkrktxxxxg**tckrtkrkrrkrrkrrkretrkrrkrkkr*ris
ssssssrnrkt*krtfrerekrigrkrigrka*krkt*krin**irerekrerisr*irk
retr*r

Frame C:
v*n*krkhkkerkemkkerkhvknnkd*qrnkrkkmkkkd*knkknvkreernvrkmkrf
*rkrwrn*slikqie*hrqklpqvvvvv*hyhhqhhliqslrivvvihqlhyyqhkqfqp
kkkerkeeknwkrklkn*nwnnkkleknvkkekkkedynkkknkenfkiy*ikkilkklk
n*nkkkmkn*kkkkkre*---

---KEKEXXDLVDKLGKDRLDKDKKDKEXKXLADKLXKESQXXELXEKLEKXKXLXDKLE
XEQKEKEXKXRQEKXLXDKLAKEQKXKEXXXLXDKLXKERQEXXLXDKLEKEKQXKXLXD
KLEKEKQXXESLEKLEKEKQXXXLXDKLAKEQKEKEEKEEKEEKEKQEKEEKERKDKELA
AAAAAAETEKLEKERLEKEKKELEEKELAEKLEKEKLEKELTDKLEKEKKEKELADKLEK
EKQDKE

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM606 (AFM606Q) /CSM/AF/AFM6-A/AFM606Q.Seq.d/ 464 e-129
SLH324 (SLH324Q) /CSM/SL/SLH3-A/SLH324Q.Seq.d/ 385 e-105
SHI390 (SHI390Q) /CSM/SH/SHI3-D/SHI390Q.Seq.d/ 385 e-105
CFJ355 (CFJ355Q) /CSM/CF/CFJ3-C/CFJ355Q.Seq.d/ 379 e-104
SLG607 (SLG607Q) /CSM/SL/SLG6-A/SLG607Q.Seq.d/ 375 e-102
AFM561 (AFM561Q) /CSM/AF/AFM5-C/AFM561Q.Seq.d/ 343 4e-93
SHF529 (SHF529Q) /CSM/SH/SHF5-B/SHF529Q.Seq.d/ 335 1e-90
CHM364 (CHM364Q) /CSM/CH/CHM3-C/CHM364Q.Seq.d/ 335 1e-90
SFC352 (SFC352Q) /CSM/SF/SFC3-C/SFC352Q.Seq.d/ 333 4e-90
SLI863 (SLI863Q) /CSM/SL/SLI8-C/SLI863Q.Seq.d/ 301 1e-80

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ361999) Dictyostelium discoideum cDNA clone:ddc19n13, 5' ... 303 1e-84 2
(BJ394487) Dictyostelium discoideum cDNA clone:dds35i07, 5' ... 303 9e-78 1
(BJ368438) Dictyostelium discoideum cDNA clone:ddc46p15, 5' ... 303 9e-78 1
(BJ329747) Dictyostelium discoideum cDNA clone:dda26k02, 5' ... 303 9e-78 1
(BJ347110) Dictyostelium discoideum cDNA clone:dda26k02, 3' ... 190 3e-73 2
(BJ375707) Dictyostelium discoideum cDNA clone:ddc19n13, 3' ... 125 2e-52 2
(AU039273) Dictyostelium discoideum slug cDNA, clone SLH324. 125 4e-52 2
(AU061918) Dictyostelium discoideum slug cDNA, clone SLG607. 125 5e-52 2
(BJ395949) Dictyostelium discoideum cDNA clone:dds40d23, 5' ... 125 8e-52 2
(BJ347269) Dictyostelium discoideum cDNA clone:dda26i15, 3' ... 125 9e-45 2
dna update 2009. 4.13
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 364,284,197
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM606 is

5' end seq. ID AFM606F
5' end seq.
>AFM606F.Seq
AAGTTTAGAATTAGAAAAGGAAGCACAAGAAAGAGAGAAAAGAAATGAAGAAAGAAAGAA
AGCACGTGAAGAACAACAAAGATTAGCAGCGGAACAAGAGAAAAAAGATGAAGAAGAAAG
ATTAAAAAAACAAAAAGAACGTGAAGAGAGAAGAAAGAAACGTGAGGAAGATGAAAAGAT
TCTAAAGGAAGAGATGGAGAAATTAGAGTCTGATAAAGCAAATAGAATAACATCGCCAAA
AACTCCCACAAGTGGTAGTAGTAGTATAGCATTATCACCATCAACATCATCTTATTCAAT
CTCTGAGAATAGTGGTGGTGATTCATCAACTTCATTATTATCAGCACAAGCAATTTCAGC
CAAAGAAGAAAGAGAGAAAAGAAGAAAAGAATTGGAAGAGGAAGCTAAAAAATTAGAATT
GGAACAACAAAAAATTAGAGAAGAACGTGAAAAAAGAAAAGAAGAAAGAAGATTACAACA
AGAAGAAGAACAAAGAAAACTTCAAGATTTATTAGATAAAAAAGATTCTGAAAAAATTGA
AAAATTAAAACAAGAAGAAAATGAAAAATTAGAAAAAGAAGAAAAAGAGAGAATAGAXXX
XXXXXXX
Length of 5' end seq. 607
3' end seq. ID AFM606Z
3' end seq.
>AFM606Z.Seq
XXXXXXXXXXAAAAAGAAAAAGAAGNGAANGATTTGGTTGATAAGCTTGGNAAGGATCGT
TTAGATAAAGATAAAAAAGATAAAGAAGNGAAAGANTTGGCTGATAAACTTNATAAAGAA
TCTCAATANAANGAGTTGNNTGAGAAATTAGAGAAAGNGAAAGANTTGGNTGATAAACTT
GAAAANGAACAAAAGGAAAAAGAAGNNAAAGANCGTCAAGAGAAAGANTTGGNTGATAAA
CTTGCAAAAGAACAAAAGGANAAAGAAGNGAANGANTTGGNTGATAAATTAGNNAAAGAA
CGTCAAGAGAANGANTTGGNTGATAAATTAGAAAAAGAAAAACAAGNNAAAGANTTGGNT
GATAAATTGGAAAAAGAAAAACAANAANNNGAATCACTTGAAAAATTAGAAAAAGAAAAA
CAAGNNAANGANTTGGNTGATAAACTTGCAAAAGAACAAAAAGAAAAAGAAGAAAAAGAA
GAAAAAGAAGAAAAAGAGAAACAAGAAAAAGAAGAAAAAGAAAGAAAAGATAAAGAATTA
GCAGCAGCAGCAGCAGCAGCAGAAACAGAAAAACTTGAAAAAGAACGTTTAGAGAAAGAG
AAAAAAGAATTGGAAGAAAAAGAATTGGCAGAAAAGCTTGAAAAAGAAAAACTTGAAAAA
GAATTAACTGATAAATTAGAGAAAGAGAAAAAAGAGAAAGAATTAGCAGATAAATTAGAA
AAAGAGAAACAAGATAAAGAAT
Length of 3' end seq. 742
Connected seq. ID AFM606P
Connected seq.
>AFM606P.Seq
AAGTTTAGAATTAGAAAAGGAAGCACAAGAAAGAGAGAAAAGAAATGAAGAAAGAAAGAA
AGCACGTGAAGAACAACAAAGATTAGCAGCGGAACAAGAGAAAAAAGATGAAGAAGAAAG
ATTAAAAAAACAAAAAGAACGTGAAGAGAGAAGAAAGAAACGTGAGGAAGATGAAAAGAT
TCTAAAGGAAGAGATGGAGAAATTAGAGTCTGATAAAGCAAATAGAATAACATCGCCAAA
AACTCCCACAAGTGGTAGTAGTAGTATAGCATTATCACCATCAACATCATCTTATTCAAT
CTCTGAGAATAGTGGTGGTGATTCATCAACTTCATTATTATCAGCACAAGCAATTTCAGC
CAAAGAAGAAAGAGAGAAAAGAAGAAAAGAATTGGAAGAGGAAGCTAAAAAATTAGAATT
GGAACAACAAAAAATTAGAGAAGAACGTGAAAAAAGAAAAGAAGAAAGAAGATTACAACA
AGAAGAAGAACAAAGAAAACTTCAAGATTTATTAGATAAAAAAGATTCTGAAAAAATTGA
AAAATTAAAACAAGAAGAAAATGAAAAATTAGAAAAAGAAGAAAAAGAGAGAATAGA---
-------AAAAAGAAAAAGAAGNGAANGATTTGGTTGATAAGCTTGGNAAGGATCGTTTA
GATAAAGATAAAAAAGATAAAGAAGNGAAAGANTTGGCTGATAAACTTNATAAAGAATCT
CAATANAANGAGTTGNNTGAGAAATTAGAGAAAGNGAAAGANTTGGNTGATAAACTTGAA
AANGAACAAAAGGAAAAAGAAGNNAAAGANCGTCAAGAGAAAGANTTGGNTGATAAACTT
GCAAAAGAACAAAAGGANAAAGAAGNGAANGANTTGGNTGATAAATTAGNNAAAGAACGT
CAAGAGAANGANTTGGNTGATAAATTAGAAAAAGAAAAACAAGNNAAAGANTTGGNTGAT
AAATTGGAAAAAGAAAAACAANAANNNGAATCACTTGAAAAATTAGAAAAAGAAAAACAA
GNNAANGANTTGGNTGATAAACTTGCAAAAGAACAAAAAGAAAAAGAAGAAAAAGAAGAA
AAAGAAGAAAAAGAGAAACAAGAAAAAGAAGAAAAAGAAAGAAAAGATAAAGAATTAGCA
GCAGCAGCAGCAGCAGCAGAAACAGAAAAACTTGAAAAAGAACGTTTAGAGAAAGAGAAA
AAAGAATTGGAAGAAAAAGAATTGGCAGAAAAGCTTGAAAAAGAAAAACTTGAAAAAGAA
TTAACTGATAAATTAGAGAAAGAGAAAAAAGAGAAAGAATTAGCAGATAAATTAGAAAAA
GAGAAACAAGATAAAGAAT
Length of connected seq. 1329
Full length Seq ID -
Full length Seq. -
Length of full length seq. -