NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM602
Library AF
(Link to library)
Clone ID AFM602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM602 (AFM602Q) /CSM/AF/AFM6-A/AFM602Q.Seq.d/
XXXXXXXXXXGAACAAAATTTTAGTTGATTGCTCTGGTCCAGAAGAAAACTTTGGTTGTG
ATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAACAAGGGTATTGACACTG
AAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTGATA
TTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGA
ATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAAC
TCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTG
TTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAA
AACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCAT
CTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCT
CATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---NKILVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDI
GATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGV
LVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTS
WGIKGYILMSKDR
Translated Amino Acid sequence (All Frames) 
Frame A:
---NKILVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDI
GATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGV
LVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTS
WGIKGYILMSKDR


Frame B:
---tkf*lialvqkktlvvmvv**imhliislktrvltlkvvihillklvqhvysinlil
vqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf
*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvph
gv*kvtf*cqri


Frame C:
---qnfs*llwsrrklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*yw
cnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcf
scwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylm
gykrlhfnvkg*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFO852 (AFO852Q) /CSM/AF/AFO8-C/AFO852Q.Seq.d/                       1132   0.0
AFM602 (AFM602Q) /CSM/AF/AFM6-A/AFM602Q.Seq.d/                       1132   0.0
AFO827 (AFO827Q) /CSM/AF/AFO8-B/AFO827Q.Seq.d/                       1118   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1116   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1116   0.0
SFK574 (SFK574Q) /CSM/SF/SFK5-D/SFK574Q.Seq.d/                       1116   0.0
SFG645 (SFG645Q) /CSM/SF/SFG6-B/SFG645Q.Seq.d/                       1116   0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/                       1116   0.0
AHH295 (AHH295Q) /CSM/AH/AHH2-D/AHH295Q.Seq.d/                       1116   0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/                       1116   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347068) Dictyostelium discoideum cDNA clone:dda26c02, 3' ...  1130   0.0    1
(BJ346328) Dictyostelium discoideum cDNA clone:dda30h14, 3' ...  1130   0.0    1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1114   0.0    1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462.       1114   0.0    1
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524.       1114   0.0    1
(BJ401286) Dictyostelium discoideum cDNA clone:dds22c19, 3' ...  1114   0.0    1
(BJ400695) Dictyostelium discoideum cDNA clone:dds14i12, 3' ...  1114   0.0    1
(BJ399605) Dictyostelium discoideum cDNA clone:dds6n16, 3' e...  1114   0.0    1
(BJ376299) Dictyostelium discoideum cDNA clone:ddc21o20, 3' ...  1114   0.0    1
(BJ352181) Dictyostelium discoideum cDNA clone:dda45m24, 3' ...  1114   0.0    1
dna update 2009. 4.13
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   373   e-102
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   196   4e-49
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   196   4e-49
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   184   1e-45
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   181   2e-44
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   179   5e-44
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   177   1e-43
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,...   176   4e-43
BC074718_1(BC074718|pid:none) Xenopus tropicalis MGC69486 protei...   172   4e-42
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   172   6e-42
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM602 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM602Z
3' end seq. 
>AFM602Z.Seq
XXXXXXXXXXGAACAAAATTTTAGTTGATTGCTCTGGTCCAGAAGAAAACTTTGGTTGTG
ATGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAACAAGGGTATTGACACTG
AAAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTGATA
TTGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGA
ATGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAAC
TCTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTG
TTTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAA
AACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCAT
CTGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCT
CATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGA
Length of 3' end seq. 581
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -