VFH449
Library VF
(Link to library)
Clone ID VFH449
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U00230-1
Original site URL
Representative seq. ID VFH449P
(Link to Original site)
Representative DNA sequence
>VFH449 (VFH449Q) /CSM/VF/VFH4-C/VFH449Q.Seq.d/
GGCCTACTGGAAATATAACAATTTTTAGATGAAAAAATTATTTTCCAAGTTTTCAAGCAA
AAAATTAAAAAAAAATAATGAAAACAAAGAAAATGATCAAGATAATGAATTTTATAATTC
AAAATATAAATTAATTGAATATGATTCAACAATTAAAAGAGATGAAAATAATAAATCAAT
TACATTTAAAGTTTGTGAAGTTGAAAAAAGTCCATGGGGAATAAAAGATAAATTTTGTAT
TGAAGAATTTATAAACTTGGAAAATGAAAAAACAGGTGATGATGCTGAACAATATAAAGT
TTTAAAAACAAGTATTACAGATGGTGATGGTGATGATTTAATAAATATTGGTTGTGGTTC
AAATAGTTTTATATACTCTGCTTGGGAAAGTTATAATAATCATAATCATTTAGTATTACG
TCCTGATAATATCTGGATGGCAATATTAACTCAACTATCATTCTACATAAATAAAAACTC
TGAAGAATTACGTGAAAAATTTGTAGATTTTACTXXXXXXXXXXAGTAACATTATTAGGT
GAAATTAATGATTGGATAAATTTAAAANAAANAGTTGAAAAATTAATTCAATTCGATAAT
AAAGATTGTGAAATTAAAAAATGGTTAGTTTATTTATTACCAGTGATTGATAAATTCATT
GATTCTGTAAATGGGAATCCTGATACAACTTGGTGGAATCANATGGTTGATTATAAATCA
TCATCTGGTGGATCGATTTTAACAGGTTGGTTAGCTACNTTTTGNGTGTTCGATATCGAT
GGTAAATACAATGATAATTTAATATTATGGTGGAGTAATAAAGATAAAAAATATNAATGG
CCTAGAGTTAATGGTGATTCAATTCCAAATGGTTTTANATCAGCTCCAATCAAATTAATT
CAAGGTGAAATTCAATATAATAGGACAATTTATTCAGGTCATTTCGGTTCAAAACTTTTA
GATAANAATTCAAAATTAANACCTTCNTTAGATTGGTTTATTATTGCCAAACTTTTATAA
AATGAAAATTTCCCAGTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
aywkynnf*MKKLFSKFSSKKLKKNNENKENDQDNEFYNSKYKLIEYDSTIKRDENNKSI
TFKVCEVEKSPWGIKDKFCIEEFINLENEKTGDDAEQYKVLKTSITDGDGDDLINIGCGS
NSFIYSAWESYNNHNHLVLRPDNIWMAILTQLSFYINKNSEELREKFVDFT---

---VTLLGEINDWINLKXXVEKLIQFDNKDCEIKKWLVYLLPVIDKFIDSVNGNPDTTWW
NXMVDYKSSSGGSILTGWLATFXVFDIDGKYNDNLILWWSNKDKKYXWPRVNGDSIPNGF
XSAPIKLIQGEIQYNRTIYSGHFGSKLLDXNSKLXPSLDWFIIAKLL*nenfpv


Translated Amino Acid sequence (All Frames)
Frame A:
gllei*qfldekiifqvfkqkikkk**kqrk*sr**il*fki*in*i*fnn*kr*k**in
yi*sl*s*kksmgnkr*ily*riyklgk*knr**c*ti*sfknkyyrw*w**fnkywlwf
k*fyilclgkl**s*sfsits**yldgninstiilhk*kl*rit*kicrfy---

---sniir*n**ldkfkxxs*kinsir**rl*n*kmvslfitsd**ih*fckwes*ynlv
esxg*l*iiiwwidfnrlvsyxlxvryrw*iq**fnimve**r*kixma*s*w*fnskwf
xissnqinsr*nsi**dnlfrsfrfktfr*xfkixtfxrlvyycqtfik*kfps

Frame B:
aywkynnf*MKKLFSKFSSKKLKKNNENKENDQDNEFYNSKYKLIEYDSTIKRDENNKSI
TFKVCEVEKSPWGIKDKFCIEEFINLENEKTGDDAEQYKVLKTSITDGDGDDLINIGCGS
NSFIYSAWESYNNHNHLVLRPDNIWMAILTQLSFYINKNSEELREKFVDFT---

---VTLLGEINDWINLKXXVEKLIQFDNKDCEIKKWLVYLLPVIDKFIDSVNGNPDTTWW
NXMVDYKSSSGGSILTGWLATFXVFDIDGKYNDNLILWWSNKDKKYXWPRVNGDSIPNGF
XSAPIKLIQGEIQYNRTIYSGHFGSKLLDXNSKLXPSLDWFIIAKLL*nenfpv

Frame C:
ptgnitifr*knyfpsfqakn*kkimktkkmikimnfiiqnin*lnmiqqlkemkiinql
hlkfvklkkvhge*kinfvlknl*twkmkkqvmmlnnikf*kqvlqmvmvmi**ilvvvq
ivlytllgkviiiiii*yyvliisgwqy*lnyhst*iktlknyvknl*il---

---*hy*vklmig*i*xkxlkn*fnsiikivklkng*fiyyq*linslil*mgiliqlgg
ixwliinhhlvdrf*qvg*lxfxcsismvntmii*yyggvikiknxnglelmviqfqmvl
xqlqsn*fkvkfniigqfiqvisvqnf*ixiqn*xlx*iglllpnfykmkisqy

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFH449 (VFH449Q) /CSM/VF/VFH4-C/VFH449Q.Seq.d/ 1750 0.0
VFG724 (VFG724Q) /CSM/VF/VFG7-A/VFG724Q.Seq.d/ 315 7e-85
AFB580 (AFB580Q) /CSM/AF/AFB5-D/AFB580Q.Seq.d/ 315 7e-85
AFD728 (AFD728Q) /CSM/AF/AFD7-B/AFD728Q.Seq.d/ 305 7e-82
AFH250 (AFH250Q) /CSM/AF/AFH2-C/AFH250Q.Seq.d/ 155 2e-36
VFA826 (VFA826Q) /CSM/VF/VFA8-B/VFA826Q.Seq.d/ 48 3e-04
VHQ130 (VHQ130Q) /CSM/VH/VHQ1-B/VHQ130Q.Seq.d/ 40 0.066
VHI703 (VHI703Q) /CSM/VH/VHI7-A/VHI703Q.Seq.d/ 40 0.066
VHH563 (VHH563Q) /CSM/VH/VHH5-C/VHH563Q.Seq.d/ 40 0.066
VFL612 (VFL612Q) /CSM/VF/VFL6-A/VFL612Q.Seq.d/ 40 0.066

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 2e-14 27
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces. 32 8e-13 21
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 42 2e-12 25
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4. 38 1e-11 25
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence. 38 1e-11 21
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 40 7e-11 30
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence. 34 8e-11 26
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 34 2e-10 23
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence. 36 4e-10 18
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 36 6e-10 15
dna update 2004. 1.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AM920431_1540(AM920431|pid:none) Penicillium chrysogenum Wiscons... 74 1e-11
CU633900_662(CU633900|pid:none) Podospora anserina genomic DNA c... 63 2e-08
AM920437_1895(AM920437|pid:none) Penicillium chrysogenum Wiscons... 62 3e-08
AM746676_7829(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 61 7e-08
CU638743_122(CU638743|pid:none) Podospora anserina genomic DNA c... 56 2e-06
CP000875_3836(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 48 5e-04
AE015928_4406(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 48 5e-04
CP000113_2189(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 45 0.004
AM746676_1988(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.046
(Q5UQ60) RecName: Full=Uncharacterized protein L662; &AY653733_... 38 0.51
protein update 2009. 6.20
PSORT

psg: 0.28 gvh: 0.08 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.40 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: nuclear
36.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for VFH449 is nuc

5' end seq. ID VFH449F
5' end seq.
>VFH449F.Seq
GGCCTACTGGAAATATAACAATTTTTAGATGAAAAAATTATTTTCCAAGTTTTCAAGCAA
AAAATTAAAAAAAAATAATGAAAACAAAGAAAATGATCAAGATAATGAATTTTATAATTC
AAAATATAAATTAATTGAATATGATTCAACAATTAAAAGAGATGAAAATAATAAATCAAT
TACATTTAAAGTTTGTGAAGTTGAAAAAAGTCCATGGGGAATAAAAGATAAATTTTGTAT
TGAAGAATTTATAAACTTGGAAAATGAAAAAACAGGTGATGATGCTGAACAATATAAAGT
TTTAAAAACAAGTATTACAGATGGTGATGGTGATGATTTAATAAATATTGGTTGTGGTTC
AAATAGTTTTATATACTCTGCTTGGGAAAGTTATAATAATCATAATCATTTAGTATTACG
TCCTGATAATATCTGGATGGCAATATTAACTCAACTATCATTCTACATAAATAAAAACTC
TGAAGAATTACGTGAAAAATTTGTAGATTTTACT----------
Length of 5' end seq. 514
3' end seq. ID VFH449Z
3' end seq.
>VFH449Z.Seq
----------AGTAACATTATTAGGTGAAATTAATGATTGGATAAATTTAAAANAAANAG
TTGAAAAATTAATTCAATTCGATAATAAAGATTGTGAAATTAAAAAATGGTTAGTTTATT
TATTACCAGTGATTGATAAATTCATTGATTCTGTAAATGGGAATCCTGATACAACTTGGT
GGAATCANATGGTTGATTATAAATCATCATCTGGTGGATCGATTTTAACAGGTTGGTTAG
CTACNTTTTGNGTGTTCGATATCGATGGTAAATACAATGATAATTTAATATTATGGTGGA
GTAATAAAGATAAAAAATATNAATGGCCTAGAGTTAATGGTGATTCAATTCCAAATGGTT
TTANATCAGCTCCAATCAAATTAATTCAAGGTGAAATTCAATATAATAGGACAATTTATT
CAGGTCATTTCGGTTCAAAACTTTTAGATAANAATTCAAAATTAANACCTTCNTTAGATT
GGTTTATTATTGCCAAACTTTTATAAAATGAAAATTTCCCAGTAT
Length of 3' end seq. 515
Connected seq. ID VFH449P
Connected seq.
>VFH449P.Seq
GGCCTACTGGAAATATAACAATTTTTAGATGAAAAAATTATTTTCCAAGTTTTCAAGCAA
AAAATTAAAAAAAAATAATGAAAACAAAGAAAATGATCAAGATAATGAATTTTATAATTC
AAAATATAAATTAATTGAATATGATTCAACAATTAAAAGAGATGAAAATAATAAATCAAT
TACATTTAAAGTTTGTGAAGTTGAAAAAAGTCCATGGGGAATAAAAGATAAATTTTGTAT
TGAAGAATTTATAAACTTGGAAAATGAAAAAACAGGTGATGATGCTGAACAATATAAAGT
TTTAAAAACAAGTATTACAGATGGTGATGGTGATGATTTAATAAATATTGGTTGTGGTTC
AAATAGTTTTATATACTCTGCTTGGGAAAGTTATAATAATCATAATCATTTAGTATTACG
TCCTGATAATATCTGGATGGCAATATTAACTCAACTATCATTCTACATAAATAAAAACTC
TGAAGAATTACGTGAAAAATTTGTAGATTTTACT----------AGTAACATTATTAGGT
GAAATTAATGATTGGATAAATTTAAAANAAANAGTTGAAAAATTAATTCAATTCGATAAT
AAAGATTGTGAAATTAAAAAATGGTTAGTTTATTTATTACCAGTGATTGATAAATTCATT
GATTCTGTAAATGGGAATCCTGATACAACTTGGTGGAATCANATGGTTGATTATAAATCA
TCATCTGGTGGATCGATTTTAACAGGTTGGTTAGCTACNTTTTGNGTGTTCGATATCGAT
GGTAAATACAATGATAATTTAATATTATGGTGGAGTAATAAAGATAAAAAATATNAATGG
CCTAGAGTTAATGGTGATTCAATTCCAAATGGTTTTANATCAGCTCCAATCAAATTAATT
CAAGGTGAAATTCAATATAATAGGACAATTTATTCAGGTCATTTCGGTTCAAAACTTTTA
GATAANAATTCAAAATTAANACCTTCNTTAGATTGGTTTATTATTGCCAAACTTTTATAA
AATGAAAATTTCCCAGTAT
Length of connected seq. 1029
Full length Seq ID -
Full length Seq. -
Length of full length seq. -