NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM586
Library AF
(Link to library)
Clone ID AFM586
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM586 (AFM586Q) /CSM/AF/AFM5-D/AFM586Q.Seq.d/
XXXXXXXXXXGTCGCTTCAGATCCATTATCAAATATCACCGAACCAGTTGGCCTCAACTT
AATAGATCATGTCGTTTCAAATCATGCAGATAAAATGATGGAACCAGTCGTTCAATGGTA
CGAAAAGGTTTTACAATTCCACCGTTTCTGGTCAGTTGATGACAAAACCATTCATACCGA
ATATTCATCATTAAGATCAGTCGTAGTTGCTGATAAGTCTGAAAAAGTTAAATTACCAAT
TAATGAACCAGCCAATGGTATTAGAAAGAGTCAAATTCAAGAATACGTAGATTTCTACAA
TGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACATCATTGATGCTATCTCAAA
ATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAACATACTATACATCACTCAG
AGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATTTGGACACTTTAGAGAAATT
ACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTACAAATCTTTACAAATAATGT
TGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAAACAACCATGATGGTTTCGG
TGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGACAACAAGAAACTCGTGGAAA
CTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATTAACTAAATAACATTACAATAT
ATCAAAATAAATAATAAATAAAACTCTATTTAAAAAGNATTTTTTA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---ASDPLSNITEPVGLNLIDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEY
SSLRSVVVADKSEKVKLPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKL
RSRGVSFLTVPKTYYTSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVE
DKPTVFFEIIQRNNHDGFGAGNFKSLFEAIERQQETRGNL*vclnykcsllltk*hynis
k*iinktlfkkxfl
Translated Amino Acid sequence (All Frames) 
Frame A:
---slqihyqispnqlast**imsfqimqik*wnqsfngtkrfynstvsgqlmtkpfipn
ihh*dqs*llislkklnyqlmnqpmvlervkfknt*istmvlvfnisp*rlitslmlsqn
*dlvvslsslfqkhtihhsernyntlh*klkkiwtl*rnytf*simmtkvifykslqiml
kinqlfslklskettmmvsvlvtlnpslkqskdnkklvetyrcvsitnvlyy*lnnitiy
qnk**iklylkxif


Frame B:
---rfrsiikyhrtswpqlnrscrfkscr*ndgtsrsmvrkgftippflvs**qnhsyri
fiikisrsc**v*ks*itn**tsqwy*kesnsrirrflqwcwcstyrlkd**hh*cylki
kiswclfphcsknilyitqreittlfirn*rrfghfreithfnrl**qrlsftnlyk*c*
r*tncfl*nypkkqp*wfrcw*l*ipl*snrkttrnswkligvsqlqmffiin*itlqyi
kinnk*nsi*kxff


Frame C:
---ASDPLSNITEPVGLNLIDHVVSNHADKMMEPVVQWYEKVLQFHRFWSVDDKTIHTEY
SSLRSVVVADKSEKVKLPINEPANGIRKSQIQEYVDFYNGAGVQHIALKTDNIIDAISKL
RSRGVSFLTVPKTYYTSLREKLQHSSLEIKEDLDTLEKLHILIDYDDKGYLLQIFTNNVE
DKPTVFFEIIQRNNHDGFGAGNFKSLFEAIERQQETRGNL*vclnykcsllltk*hynis
k*iinktlfkkxfl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM586 (AFM586Q) /CSM/AF/AFM5-D/AFM586Q.Seq.d/                       1493   0.0
VFE281 (VFE281Q) /CSM/VF/VFE2-D/VFE281Q.Seq.d/                       1487   0.0
CFC563 (CFC563Q) /CSM/CF/CFC5-C/CFC563Q.Seq.d/                       1483   0.0
CHD784 (CHD784Q) /CSM/CH/CHD7-D/CHD784Q.Seq.d/                       1479   0.0
CFJ240 (CFJ240Q) /CSM/CF/CFJ2-B/CFJ240Q.Seq.d/                       1479   0.0
CFF120 (CFF120Q) /CSM/CF/CFF1-A/CFF120Q.Seq.d/                       1479   0.0
VFL388 (VFL388Q) /CSM/VF/VFL3-D/VFL388Q.Seq.d/                       1475   0.0
VSD101 (VSD101Q) /CSM/VS/VSD1-A/VSD101Q.Seq.d/                       1471   0.0
VFD216 (VFD216Q) /CSM/VF/VFD2-A/VFD216Q.Seq.d/                       1471   0.0
AFO526 (AFO526Q) /CSM/AF/AFO5-B/AFO526Q.Seq.d/                       1471   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...  1348   0.0    1
(BJ431501) Dictyostelium discoideum cDNA clone:ddv14l10, 3' ...  1348   0.0    1
(BJ376107) Dictyostelium discoideum cDNA clone:ddc21p02, 3' ...  1348   0.0    1
(BJ374134) Dictyostelium discoideum cDNA clone:ddc6m15, 3' e...  1348   0.0    1
(BJ373973) Dictyostelium discoideum cDNA clone:ddc5m14, 3' e...  1348   0.0    1
(BJ372811) Dictyostelium discoideum cDNA clone:ddc14c10, 3' ...  1348   0.0    1
(BJ372722) Dictyostelium discoideum cDNA clone:ddc13h21, 3' ...  1348   0.0    1
(BJ372346) Dictyostelium discoideum cDNA clone:ddc12a11, 3' ...  1348   0.0    1
(BJ372193) Dictyostelium discoideum cDNA clone:ddc11j17, 3' ...  1348   0.0    1
(BJ371983) Dictyostelium discoideum cDNA clone:ddc10o18, 3' ...  1348   0.0    1
dna update 2009. 4.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NV5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   437   e-121
AM114773_1(AM114773|pid:none) Platynereis dumerilii partial mRNA...   298   1e-79
AE014296_3563(AE014296|pid:none) Drosophila melanogaster chromos...   292   7e-78
S32821(S32821;S35890;S35889)4-hydroxyphenylpyruvate dioxygenase ...   288   1e-76
BC046075_1(BC046075|pid:none) Danio rerio zgc:56326, mRNA (cDNA ...   285   1e-75
(Q02110) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   285   1e-75
(Q6TGZ5) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   285   1e-75
BC153801_1(BC153801|pid:none) Xenopus laevis hypothetical protei...   282   7e-75
(P32754) RecName: Full=4-hydroxyphenylpyruvate dioxygenase;     ...   281   2e-74
BC077167_1(BC077167|pid:none) Danio rerio 4-hydroxyphenylpyruvat...   280   3e-74
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM586 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM586Z
3' end seq. 
>AFM586Z.Seq
XXXXXXXXXXGTCGCTTCAGATCCATTATCAAATATCACCGAACCAGTTGGCCTCAACTT
AATAGATCATGTCGTTTCAAATCATGCAGATAAAATGATGGAACCAGTCGTTCAATGGTA
CGAAAAGGTTTTACAATTCCACCGTTTCTGGTCAGTTGATGACAAAACCATTCATACCGA
ATATTCATCATTAAGATCAGTCGTAGTTGCTGATAAGTCTGAAAAAGTTAAATTACCAAT
TAATGAACCAGCCAATGGTATTAGAAAGAGTCAAATTCAAGAATACGTAGATTTCTACAA
TGGTGCTGGTGTTCAACATATCGCCTTAAAGACTGATAACATCATTGATGCTATCTCAAA
ATTAAGATCTCGTGGTGTCTCTTTCCTCACTGTTCCAAAAACATACTATACATCACTCAG
AGAGAAATTACAACACTCTTCATTAGAAATTAAAGAAGATTTGGACACTTTAGAGAAATT
ACACATTTTAATCGATTATGATGACAAAGGTTATCTTTTACAAATCTTTACAAATAATGT
TGAAGATAAACCAACTGTTTTCTTTGAAATTATCCAAAGAAACAACCATGATGGTTTCGG
TGCTGGTAACTTTAAATCCCTCTTTGAAGCAATCGAAAGACAACAAGAAACTCGTGGAAA
CTTATAGGTGTGTCTCAATTACAAATGTTCTTTATTATTAACTAAATAACATTACAATAT
ATCAAAATAAATAATAAATAAAACTCTATTTAAAAAGNATTTTTTA
Length of 3' end seq. 766
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -