AFM585
Library AF
(Link to library)
Clone ID AFM585
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM585P
(Link to Original site)
Representative DNA sequence
>AFM585 (AFM585Q) /CSM/AF/AFM5-D/AFM585Q.Seq.d/
AATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATAAAAA
AAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATATCTATC
ACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATACATG
TAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAGAATT
TTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAAAACAC
GAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTGTACC
ATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTATGGA
ATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTCCAAG
ATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCAGAAGGATT
CTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGXXXXXXXXXX
ATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACCAATA
TCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGTTCCA
GCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAACTTT
GTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTT
GTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCAT
CAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTA
GATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAA
CCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAA
CAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCG
ATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTG
AACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCAT
CCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTG
CAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCA
sequence update 2009. 4. 3
Translated Amino Acid sequence
il*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTC
KSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFVP
YHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCPEGF
YCEEQGGSACCVPHHD---

---LCNQTRCPHDYQCETISTNIVKCSPKNDECKWHRCPPGSSCFNSRNGPHCLANNVFP
QLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCT
NTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAAS
SADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAAS
SAASSESSESSSATS


Translated Amino Acid sequence (All Frames)
Frame A:
nfviikkgik*lyiyiki*kk*nenfifsfsfifnyiisitnfwlgwwqrl*kssfriym
*ir*klcifticimlw*eriflc*s*s*kll**fimc*khenw*nl*dlvkl*tt*rfct
isftkynhm*iirl*skrygm*mg*iitmlwnfllpknskmcwsswwrs*m*qnemsrri
ll*rtrw*cmlrtts*---

---iyvikpvvhtiinvkplapis*nvhqrmtnvngivvhqvpaasivetvhtvlpimys
hnfvkllnvqlislvk*leviqlvlkqdhryhhhiaqlvqsyhqhvitle*fvfkyqaiv
pildshvahliqfvfihqllllqplqqlhqlsqlqplqllqvqqlvelqlvvqllivvll
pqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqvalhplpqvvlhhhqlqvqlh
hqlqaqkaqkahqpl

Frame B:
il*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSEYTC
KSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFVP
YHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCPEGF
YCEEQGGSACCVPHHD---

---fm*snplstrlsm*nh*hqyremftke*rm*maslstrfqllq**krstlscq*cip
ttl*sysmsn*fll*nd*r*snly*skttgttttllnlcraiism*srwndlysstkqly
qy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnwwnynwwfnf***ccf
lsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*csiiisfkfsci
iscklrklrklishf

Frame C:
fcnykkrnqiiiyiyknikkik*efyi*llfyf*lhyiyhqllvgvvaeivkvivqnihv
nqievvhiyhlyhvvvrknfsvliviieivvmiyhvlktrelvkslrfgqvvnhieilyh
iihqiqphvnh*vvkqevwnvnglnhhhvmellvaqefqdvlvimvavinvte*dvqkds
ivknkvvvhaayhimt---

---LCNQTRCPHDYQCETISTNIVKCSPKNDECKWHRCPPGSSCFNSRNGPHCLANNVFP
QLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCT
NTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAAS
SADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAAS
SAASSESSESSSATS

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL185 (SFL185Q) /CSM/SF/SFL1-D/SFL185Q.Seq.d/ 1503 0.0
SFK752 (SFK752Q) /CSM/SF/SFK7-C/SFK752Q.Seq.d/ 1503 0.0
SFK722 (SFK722Q) /CSM/SF/SFK7-A/SFK722Q.Seq.d/ 1503 0.0
SFI829 (SFI829Q) /CSM/SF/SFI8-B/SFI829Q.Seq.d/ 1503 0.0
SFI203 (SFI203Q) /CSM/SF/SFI2-A/SFI203Q.Seq.d/ 1503 0.0
SFF631 (SFF631Q) /CSM/SF/SFF6-B/SFF631Q.Seq.d/ 1503 0.0
SFE663 (SFE663Q) /CSM/SF/SFE6-C/SFE663Q.Seq.d/ 1503 0.0
SFD672 (SFD672Q) /CSM/SF/SFD6-C/SFD672Q.Seq.d/ 1503 0.0
SFD192 (SFD192Q) /CSM/SF/SFD1-D/SFD192Q.Seq.d/ 1503 0.0
CFI758 (CFI758Q) /CSM/CF/CFI7-C/CFI758Q.Seq.d/ 1503 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(D13973) Dictyostelium discoideum gene for Dp87 protein, com... 1503 0.0 1
(BJ402820) Dictyostelium discoideum cDNA clone:dds18j08, 3' ... 1503 0.0 1
(BJ402470) Dictyostelium discoideum cDNA clone:dds17e02, 3' ... 1503 0.0 1
(BJ401618) Dictyostelium discoideum cDNA clone:dds23i21, 3' ... 1503 0.0 1
(BJ401236) Dictyostelium discoideum cDNA clone:dds22h13, 3' ... 1503 0.0 1
(BJ401106) Dictyostelium discoideum cDNA clone:dds22l05, 3' ... 1503 0.0 1
(BJ400069) Dictyostelium discoideum cDNA clone:dds8o18, 3' e... 1503 0.0 1
(BJ399871) Dictyostelium discoideum cDNA clone:dds7g23, 3' e... 1503 0.0 1
(BJ398027) Dictyostelium discoideum cDNA clone:dds10m16, 3' ... 1503 0.0 1
(BJ375408) Dictyostelium discoideum cDNA clone:ddc18j13, 3' ... 1503 0.0 1
dna update 2009. 4.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 401 e-122
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 398 e-121
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 148 1e-48
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 107 7e-22
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 69 5e-20
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 69 1e-19
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 65 4e-09
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid... 62 5e-08
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso... 60 5e-08
T22274(T22274)hypothetical protein F46B3.9 - Caenorhabditis eleg... 60 1e-07
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM585 is

5' end seq. ID AFM585F
5' end seq.
>AFM585F.Seq
AATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATAAAAA
AAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATATCTATC
ACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATACATG
TAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAGAATT
TTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAAAACAC
GAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTGTACC
ATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTATGGA
ATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTCCAAG
ATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCAGAAGGATT
CTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACGXXXXXXXXXX
Length of 5' end seq. 600
3' end seq. ID AFM585Z
3' end seq.
>AFM585Z.Seq
XXXXXXXXXXATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATT
AGCACCAATATCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCA
CCAGGTTCCAGCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTC
CCACAACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGT
AATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCA
GAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGT
ACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACT
GCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACT
GCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCT
TCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCC
GCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGT
AGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCA
TCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCA
Length of 3' end seq. 768
Connected seq. ID AFM585P
Connected seq.
>AFM585P.Seq
AATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAATATAAAAA
AAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTATATCTATC
ACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAATATACATG
TAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAGAAAGAATT
TTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCTAAAAACAC
GAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGATTTTGTACC
ATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGAGGTATGGA
ATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGAATTCCAAG
ATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGAATGAGATGTCCAGAAGGATT
CTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACCACATCATGACG----------
ATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACCAATA
TCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGTTCCA
GCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAACTTT
GTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTT
GTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCAT
CAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTA
GATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAA
CCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAA
CAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCG
ATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTG
AACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCAT
CCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTG
CAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCA
Length of connected seq. 1348
Full length Seq ID -
Full length Seq. -
Length of full length seq. -