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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFH273
Library VF
(Link to library)
Clone ID VFH273
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16064-1
Original site URL
Representative seq. ID VFH273P
(Link to Original site)
Representative DNA sequence 
>VFH273 (VFH273Q) /CSM/VF/VFH2-D/VFH273Q.Seq.d/
ATTTTAAATNAAAGAATGAATAAATTAGTTGAATGTGTACCAAATTTTTCAGAAGGTAGA
GATCAAACTATCATTGATGCAATCTCTAAAGCAATCAGAGATACAGCAGGTTGTACATTA
TTAGATGTTGATCCAGGTAAATCAACTAACCGTACAGTTTATACTTTTGTTGGTTGTCCA
GATTCAATTGTAAATGGTGCTATCAATGCTACAAAAGTTGCCTTTAAATTAATTGATATG
ACTAAACATCATGGTGAACATCCAAGAATGGGTGCATTAGATGTTTGTCCATTTGTACCA
GTTAGAAATGTAACAATGGAAGAATGTGTAAATTGTTCAAAAGAATTTGGTAAAAGAATT
TCAGAAGAGATTGGTGTACCAATATTTTTATATGAAGAAGCATCAACTCAATCATATCGT
AAACAATTGGAACAAATTAGACAAGGTGAATATGAAGGTTTAGAAGAGAAATTAAAGGAA
GAAAAATGGAAACXXXXXXXXXXCCCAACCATTGGCTTCAATGTCTGTCAGAGGTTTCGT
TGAATTGTTAGGCTCAAGAACTCCTGCACCAGGTGGTGGCTCTGCCTCTGCACTCATCGC
TGCTATGGGTGCCGGTTTGGGTGCTATGACTGGTTGGATGACTTTTGGTAAAAAGAAATT
CGAAGCTTTAGATTCAATCATGAGAGAACTCTTACCACCATTAGATAAAGCAATGAGAGA
TTTAATTCCATACATTGATGCCGATACTAACGCTTTCAATGATTACATCAAAGCAATGGG
TACTCCAAAAGGTCCACAAAGAGATATCGCCATCGATAAAGCTTTGAAACAAGCAATCAA
TATACCATTATCAACTATGAAAATTTCAAACACTTGTTGGGGACCTCTCTTAAAAATGGC
TCAATATGGTAATTTGGCTTCAAAATNCTGACTTGGAAGTAGGTTGTAAATNCTTTGGAA
ACTGGTATTTGGGGTGCTCATCGTAATGTTTCTATCAATCTTTTAGATTGTAAAGATGCT
CAATTTGTTGAATCTACAACTAAAGAAGCAAATGAAATNCTTAAAAAATGCTCAAGAATN
CTTTACAAAAAGTTTTAGAAATTTAAGTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ILNXRMNKLVECVPNFSEGRDQTIIDAISKAIRDTAGCTLLDVDPGKSTNRTVYTFVGCP
DSIVNGAINATKVAFKLIDMTKHHGEHPRMGALDVCPFVPVRNVTMEECVNCSKEFGKRI
SEEIGVPIFLYEEASTQSYRKQLEQIRQGEYEGLEEKLKEEKWK---

---QPLASMSVRGFVELLGSRTPAPGGGSASALIAAMGAGLGAMTGWMTFGKKKFEALDS
IMRELLPPLDKAMRDLIPYIDADTNAFNDYIKAMGTPKGPQRDIAIDKALKQAINIPLST
MKISNTCWGPLLKMAQYGNLASKX*lgsrl*xlwklvfgvlivmflsif*ivkmlnllnl
qlkkqmkxlknaqexftksfrnls
Translated Amino Acid sequence (All Frames) 
Frame A:
ILNXRMNKLVECVPNFSEGRDQTIIDAISKAIRDTAGCTLLDVDPGKSTNRTVYTFVGCP
DSIVNGAINATKVAFKLIDMTKHHGEHPRMGALDVCPFVPVRNVTMEECVNCSKEFGKRI
SEEIGVPIFLYEEASTQSYRKQLEQIRQGEYEGLEEKLKEEKWK---

---pnhwlqclsevslnc*aqellhqvvalplhssllwvpvwvl*lvg*llvkrnskl*i
qs*ensyhh*ikq*ei*fhtlmpiltlsmitskqwvlqkvhkeispsikl*nkqsiyhyq
l*kfqtlvgdls*kwlnmviwlqnxdlevgckxfgnwylgcss*cfyqsfrl*rcsic*i
yn*rsk*nx*kmlknxlqkvlei*v

Frame B:
f*xke*in*lnvyqifqkveiklslmqslkqseiqqvvhy*mliqvnqltvqfilllvvq
iql*mvlsmlqklpln*li*lnimvniqewvh*mfvhlyqlem*qwknv*ivqknlvkef
qkrlvyqyfymkkhqlnhivnnwnkldkvnmkv*krn*rkkngn---

---ptigfnvcqrfr*ivrlknsctrwwlclcthrcygcrfgcydwlddfw*keirsfrf
nhertlttir*snerfnsih*cry*rfq*lhqsngyskrstkryrhr*sfetsnqytiin
yenfkhllgtslkngsiw*fgfkxltwk*vvnxletgiwgahrnvsinlldckdaqfves
ttkeanexlkkcsrxlykkf*kfk

Frame C:
fkxkne*is*mctkffrr*rsnyh*cnl*snqrysrlyiirc*sr*in*pyslyfcwlsr
fnckwcyqcykscl*in*yd*tsw*tskngcirclsicts*kcnngrmcklfkriw*knf
rrdwctnifi*rsinsiis*tigtn*tr*i*rfrreikgrkme---

---QPLASMSVRGFVELLGSRTPAPGGGSASALIAAMGAGLGAMTGWMTFGKKKFEALDS
IMRELLPPLDKAMRDLIPYIDADTNAFNDYIKAMGTPKGPQRDIAIDKALKQAINIPLST
MKISNTCWGPLLKMAQYGNLASKX*lgsrl*xlwklvfgvlivmflsif*ivkmlnllnl
qlkkqmkxlknaqexftksfrnls
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFH273 (VFH273Q) /CSM/VF/VFH2-D/VFH273Q.Seq.d/                       2109   0.0
VFO770 (VFO770Q) /CSM/VF/VFO7-C/VFO770Q.Seq.d/                       1128   0.0
SFF722 (SFF722Q) /CSM/SF/SFF7-A/SFF722Q.Seq.d/                       1128   0.0
SFJ537 (SFJ537Q) /CSM/SF/SFJ5-B/SFJ537Q.Seq.d/                       1108   0.0
AFC160 (AFC160Q) /CSM/AF/AFC1-C/AFC160Q.Seq.d/                       1066   0.0
SSG372 (SSG372Q) /CSM/SS/SSG3-C/SSG372Q.Seq.d/                       1001   0.0
SLB114 (SLB114Q) /CSM/SL/SLB1-A/SLB114Q.Seq.d/                        846   0.0
SFH640 (SFH640Q) /CSM/SF/SFH6-B/SFH640Q.Seq.d/                        765   0.0
SSH496 (SSH496Q) /CSM/SS/SSH4-D/SSH496Q.Seq.d/                        654   0.0
SSE887 (SSE887Q) /CSM/SS/SSE8-D/SSE887Q.Seq.d/                        638   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE015944|AE015944.1 Clostridium tetani E88, section 9 of 10 of the complete genome.    70   9e-13  2
BW041835|BW041835.1 Ciona intestinalis cDNA, clone:cibd047p15, 5' end, single read.    36   2e-06  5
AU283114|AU283114.1 Molgula tectiformis mRNA, clone:MT02B1G11R, 5' end.    52   1e-05  2
BW278156|BW278156.1 Ciona intestinalis cDNA, clone:cign080g10, 5' end, single read.    36   1e-04  4
BW262055|BW262055.1 Ciona intestinalis cDNA, clone:cign002i20, 5' end, single read.    36   1e-04  4
AV959422|AV959422.1 Ciona intestinalis cDNA, clone:ciad12p18, 5' end, single read.    36   1e-04  4
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   0.026  11
AE014171|AE014171.1 Streptococcus pyogenes MGAS315, section 36 of 37 of the complete genome.    50   0.027  4
AP005146|AP005146.1 Streptococcus pyogenes SSI-1 DNA, complete genome, section 6/6.    50   0.067  1
BW210204|BW210204.1 Ciona intestinalis cDNA, clone:cieg063i10, 5' end, single read.    36   0.078  3
dna update 2004. 1.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JL3) RecName: Full=Formimidoyltransferase-cyclodeaminase; Al...   292   2e-77
BX548072_6(BX548072|pid:none) Zebrafish DNA sequence from clone ...   207   7e-52
(P53603) RecName: Full=Formimidoyltransferase-cyclodeaminase; Al...   206   9e-52
CR762331_1(CR762331|pid:none) Xenopus tropicalis finished cDNA, ...   206   2e-51
BT058770_1(BT058770|pid:none) Salmo salar clone ssal-rgf-502-059...   201   4e-50
(Q9YH58) RecName: Full=Formimidoyltransferase-cyclodeaminase; Al...   199   2e-49
(Q91XD4) RecName: Full=Formimidoyltransferase-cyclodeaminase; Al...   197   5e-49
(O95954) RecName: Full=Formimidoyltransferase-cyclodeaminase; Al...   196   1e-48
BC052248_1(BC052248|pid:none) Homo sapiens formiminotransferase ...   196   1e-48
(O88618) RecName: Full=Formimidoyltransferase-cyclodeaminase; Al...   195   2e-48
protein update 2009. 6.20
PSORT 

 psg: 0.72  gvh: 0.37  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for VFH273 is cyt
5' end seq. ID VFH273F
5' end seq. 
>VFH273F.Seq
ATTTTAAATNAAAGAATGAATAAATTAGTTGAATGTGTACCAAATTTTTCAGAAGGTAGA
GATCAAACTATCATTGATGCAATCTCTAAAGCAATCAGAGATACAGCAGGTTGTACATTA
TTAGATGTTGATCCAGGTAAATCAACTAACCGTACAGTTTATACTTTTGTTGGTTGTCCA
GATTCAATTGTAAATGGTGCTATCAATGCTACAAAAGTTGCCTTTAAATTAATTGATATG
ACTAAACATCATGGTGAACATCCAAGAATGGGTGCATTAGATGTTTGTCCATTTGTACCA
GTTAGAAATGTAACAATGGAAGAATGTGTAAATTGTTCAAAAGAATTTGGTAAAAGAATT
TCAGAAGAGATTGGTGTACCAATATTTTTATATGAAGAAGCATCAACTCAATCATATCGT
AAACAATTGGAACAAATTAGACAAGGTGAATATGAAGGTTTAGAAGAGAAATTAAAGGAA
GAAAAATGGAAAC----------
Length of 5' end seq. 493
3' end seq. ID VFH273Z
3' end seq. 
>VFH273Z.Seq
----------CCCAACCATTGGCTTCAATGTCTGTCAGAGGTTTCGTTGAATTGTTAGGC
TCAAGAACTCCTGCACCAGGTGGTGGCTCTGCCTCTGCACTCATCGCTGCTATGGGTGCC
GGTTTGGGTGCTATGACTGGTTGGATGACTTTTGGTAAAAAGAAATTCGAAGCTTTAGAT
TCAATCATGAGAGAACTCTTACCACCATTAGATAAAGCAATGAGAGATTTAATTCCATAC
ATTGATGCCGATACTAACGCTTTCAATGATTACATCAAAGCAATGGGTACTCCAAAAGGT
CCACAAAGAGATATCGCCATCGATAAAGCTTTGAAACAAGCAATCAATATACCATTATCA
ACTATGAAAATTTCAAACACTTGTTGGGGACCTCTCTTAAAAATGGCTCAATATGGTAAT
TTGGCTTCAAAATNCTGACTTGGAAGTAGGTTGTAAATNCTTTGGAAACTGGTATTTGGG
GTGCTCATCGTAATGTTTCTATCAATCTTTTAGATTGTAAAGATGCTCAATTTGTTGAAT
CTACAACTAAAGAAGCAAATGAAATNCTTAAAAAATGCTCAAGAATNCTTTACAAAAAGT
TTTAGAAATTTAAGTA
Length of 3' end seq. 606
Connected seq. ID VFH273P
Connected seq. 
>VFH273P.Seq
ATTTTAAATNAAAGAATGAATAAATTAGTTGAATGTGTACCAAATTTTTCAGAAGGTAGA
GATCAAACTATCATTGATGCAATCTCTAAAGCAATCAGAGATACAGCAGGTTGTACATTA
TTAGATGTTGATCCAGGTAAATCAACTAACCGTACAGTTTATACTTTTGTTGGTTGTCCA
GATTCAATTGTAAATGGTGCTATCAATGCTACAAAAGTTGCCTTTAAATTAATTGATATG
ACTAAACATCATGGTGAACATCCAAGAATGGGTGCATTAGATGTTTGTCCATTTGTACCA
GTTAGAAATGTAACAATGGAAGAATGTGTAAATTGTTCAAAAGAATTTGGTAAAAGAATT
TCAGAAGAGATTGGTGTACCAATATTTTTATATGAAGAAGCATCAACTCAATCATATCGT
AAACAATTGGAACAAATTAGACAAGGTGAATATGAAGGTTTAGAAGAGAAATTAAAGGAA
GAAAAATGGAAAC----------CCCAACCATTGGCTTCAATGTCTGTCAGAGGTTTCGT
TGAATTGTTAGGCTCAAGAACTCCTGCACCAGGTGGTGGCTCTGCCTCTGCACTCATCGC
TGCTATGGGTGCCGGTTTGGGTGCTATGACTGGTTGGATGACTTTTGGTAAAAAGAAATT
CGAAGCTTTAGATTCAATCATGAGAGAACTCTTACCACCATTAGATAAAGCAATGAGAGA
TTTAATTCCATACATTGATGCCGATACTAACGCTTTCAATGATTACATCAAAGCAATGGG
TACTCCAAAAGGTCCACAAAGAGATATCGCCATCGATAAAGCTTTGAAACAAGCAATCAA
TATACCATTATCAACTATGAAAATTTCAAACACTTGTTGGGGACCTCTCTTAAAAATGGC
TCAATATGGTAATTTGGCTTCAAAATNCTGACTTGGAAGTAGGTTGTAAATNCTTTGGAA
ACTGGTATTTGGGGTGCTCATCGTAATGTTTCTATCAATCTTTTAGATTGTAAAGATGCT
CAATTTGTTGAATCTACAACTAAAGAAGCAAATGAAATNCTTAAAAAATGCTCAAGAATN
CTTTACAAAAAGTTTTAGAAATTTAAGTA
Length of connected seq. 1099
Full length Seq ID -
Full length Seq. -
Length of full length seq. -