VFH230
Library VF
(Link to library)
Clone ID VFH230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16449-1
Original site URL
Representative seq. ID VFH230P
(Link to Original site)
Representative DNA sequence
>VFH230 (VFH230Q) /CSM/VF/VFH2-B/VFH230Q.Seq.d/
ACTGTTGGCCTACTGGNATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAA
TGTCAAAAACTCCAGCTAAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACC
ACCTCCAAATGGGTGTTGTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTAT
TATGTAAAATGTCAATTCCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTAT
CACGTTGCGCTGTTCCAGATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGA
GTGAAGTCCCATCTTATTTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAA
CTGGTGCTGGTCTTGGTAATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACC
ATATGATTCGTGCCTTTGAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAG
TCAGAGATTTAGATATCATTTCAAAAGAATTAATTGCCAAAGATATTGAATTCACAACTA
AAGCTTTAAAAACTTTACAAACCTCTTTAAAAAATAAAAXXXXXXXXXXTTTAAAAAATA
AAACCAATTGATAAAGCTAAACCAAGTTGAACTTGGTACTTATAATAAAGTTTTAGAATT
ATTAGAATCAGGTAAACATGTAAGATATGGTACTTATTCAAATGCTGAAACTGAACATGT
TCGTGATTTACATTTATTGACATCAAAACCAGCAATTTATTTAATCAATCTTTCTGAAGA
AGATTTCATTAGAAAGAAGAATAAATGGTTAGCAAAGATTAAAGCATGGGTTGATGAAAA
TGGTGGTGGTACAATGATTCCAGTTTCAGTAAGTTTTGAAAAAGCTTTATTGGATTTATC
TTCAGATGATGAAAGAAAAGCATATGAAAAAGAAAAAGGTGCAGTTAGTATTATGCCAAA
AATCATTAAAACTGGTTACAGCACATTAAATCTCATCAATTTCTTTACATGTGGTAAAGA
TGAAGTTAGAAGTTGGTGTTTACAAAAAGGTAACAAAGCTCCACAAGCTGCTGGTGTCAT
TCACACTGATTTCGAAAAAGGTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTTTT
CGAATTAAAATCTGAAGCTGAATGTAAATCAAGAGGAAAATATAGAATGGAAGGTAAAAA
CTNATGAAGTTGTTGATGGTGATATTATTTTNCTTCAAATTNCAACGTANCAAATATAAN
AAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
cwptgifsvcieikvl*YKMSKTPAKLVDCSSTLSRVGNHLQMGVVGMPNVGKSSLFNLL
CKMSIPAENFPFCTIDPNLSRCAVPDERYTWLCEHWKPKSEVPSYLQITDIAGLVKGAST
GAGLGNAFLSHIQQVDGIYHMIRAFENDEIIHVEDSVDPVRDLDIISKELIAKDIEFTTK
ALKTLQTSLKNK---

---LKNKTN**s*tklnlvliikf*ny*nqvnm*dmvliqmlklnmfviyiy*hqnqqfi
*siflkkislerring*qrlkhglmkmvvvq*fqfq*vlkklywiylqmmkekhmkkkkv
qlvlcqkslklvtah*issislhvvkmklevgvykkvtklhkllvsftliskkvslwlkl
wliltfsn*nlklnvnqeeniewkvktxevvdgdiixlqixtxqi*x


Translated Amino Acid sequence (All Frames)
Frame A:
tvgllxyfqfvlrlrfynikcqklqlnl*ivvqpsaelvttskwvllvcqmlvkvhcsiy
yvkcqfqlkishfvlliqiyhvalfqmnvilgyvnignqrvkshliykslillv*lkvlq
lvlvlvmlsfltfnksmvfti*fvplkmmksfmlkiqstqsei*isfqkn*lpkilnsql
kl*klykpl*kik---

---fkk*nqliklnqvelgtynkvlellesgkhvrygtysnaetehvrdlhlltskpaiy
linlseedfirkknkwlakikawvdengggtmipvsvsfekalldlssdderkayekekg
avsimpkiiktgystlnlinfftcgkdevrswclqkgnkapqaagvihtdfekgfimaet
maysdffelkseaecksrgkyrmegknx*sc*w*yyfxsnxnvxnixk

Frame B:
llaywxifsly*d*gfii*nvknss*tcrl*fnpqqsw*pppngccwyakcw*kfivqfi
m*nvnss*kfpilyy*skfitlrcsr*tlylvm*tletke*spilftnh*ycwfs*rcfn
wcwsw*cfpfshstsrwylpydscl*k**nhsc*rfsrpsqrfryhfkrincqry*ihn*
sfknftnlfkk*---

---LKNKTN**s*tklnlvliikf*ny*nqvnm*dmvliqmlklnmfviyiy*hqnqqfi
*siflkkislerring*qrlkhglmkmvvvq*fqfq*vlkklywiylqmmkekhmkkkkv
qlvlcqkslklvtah*issislhvvkmklevgvykkvtklhkllvsftliskkvslwlkl
wliltfsn*nlklnvnqeeniewkvktxevvdgdiixlqixtxqi*x

Frame C:
cwptgifsvcieikvl*YKMSKTPAKLVDCSSTLSRVGNHLQMGVVGMPNVGKSSLFNLL
CKMSIPAENFPFCTIDPNLSRCAVPDERYTWLCEHWKPKSEVPSYLQITDIAGLVKGAST
GAGLGNAFLSHIQQVDGIYHMIRAFENDEIIHVEDSVDPVRDLDIISKELIAKDIEFTTK
ALKTLQTSLKNK---

---*kikpidkakps*twyl**sfriirir*tckiwylfkc*n*tcs*ftfidiktsnlf
nqsf*rrfh*kee*mvskd*smg**kwwwyndssfskf*ksfigfifr**kksi*krkrc
s*yyaknh*nwlqhikshqflymw*r*s*klvftkr*qsstscwchsh*frkrfhyg*ny
glf*lfriki*s*m*ikrki*ngr*klmkllmvilfxfkxqrxkyxk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFH230 (VFH230Q) /CSM/VF/VFH2-B/VFH230Q.Seq.d/ 1281 0.0
CFF767 (CFF767Q) /CSM/CF/CFF7-C/CFF767Q.Seq.d/ 1227 0.0
VFI192 (VFI192Q) /CSM/VF/VFI1-D/VFI192Q.Seq.d/ 1223 0.0
VFE271 (VFE271Q) /CSM/VF/VFE2-C/VFE271Q.Seq.d/ 1223 0.0
VFC844 (VFC844Q) /CSM/VF/VFC8-B/VFC844Q.Seq.d/ 1223 0.0
CFH382 (CFH382Q) /CSM/CF/CFH3-D/CFH382Q.Seq.d/ 1223 0.0
VFF322 (VFF322Q) /CSM/VF/VFF3-A/VFF322Q.Seq.d/ 1217 0.0
VFK212 (VFK212Q) /CSM/VF/VFK2-A/VFK212Q.Seq.d/ 1199 0.0
VFC563 (VFC563Q) /CSM/VF/VFC5-C/VFC563Q.Seq.d/ 1197 0.0
AFK414 (AFK414Q) /CSM/AF/AFK4-A/AFK414Q.Seq.d/ 1193 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CD114066|CD114066.1 ME1-0032P-A116-F12-U.G ME1-0032 Schistosoma mansoni cDNA cloneME1-0032P-A116-F12.G, mRNA sequence. 44 1e-11 4
BC029376|BC029376.1 Homo sapiens, hypothetical protein PTD004, clone MGC:32564 IMAGE:4658276, mRNA, complete cds. 48 3e-11 4
CD080433|CD080433.1 MA3-9999U-M309-H09-U.B MA3-0001 Schistosoma mansoni cDNA clone MA3-9999U-M309-H09.B, mRNA sequence. 44 5e-11 3
BF936899|BF936899.1 EST459954 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFCC91 5' end, mRNA sequence. 44 5e-11 3
AI975066|AI975066.1 EST269660 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFAM41 5' end, mRNA sequence. 44 5e-11 3
CD120224|CD120224.1 ME1-0060T-D149-F02-U.G ME1-0060 Schistosoma mansoni cDNA clone ME1-0060T-D149-F02.G, mRNA sequence. 44 5e-11 3
AF134478|AF134478.1 Homo sapiens GTP-binding protein mRNA, complete cds. 48 5e-11 4
BD227316|BD227316.1 Secreted proteins and polynucleotides encoding them. 48 6e-11 4
AL833441|AL833441.1 Homo sapiens mRNA; cDNA DKFZp313H1942 (from clone DKFZp313H1942). 48 6e-11 4
AX210655|AX210655.1 Sequence 297 from Patent WO0157058. 48 6e-11 4
dna update 2004. 1.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AP008214_456(AP008214|pid:none) Oryza sativa (japonica cultivar-... 219 e-108
BT040728_1(BT040728|pid:none) Zea mays full-length cDNA clone ZM... 222 e-108
BT052517_1(BT052517|pid:none) Medicago truncatula clone MTYFD_FE... 216 e-107
CP001326_559(CP001326|pid:none) Micromonas sp. RCC299 chromosome... 209 e-105
CP000589_33(CP000589|pid:none) Ostreococcus lucimarinus CCE9901 ... 204 e-104
FN357318_24(FN357318|pid:none) Schistosoma mansoni genome sequen... 213 e-104
CP000596_68(CP000596|pid:none) Ostreococcus lucimarinus CCE9901 ... 200 e-102
(P91917) RecName: Full=Putative GTP-binding protein tag-210; &T... 200 e-102
EF085812_1(EF085812|pid:none) Picea sitchensis clone WS0288_L10 ... 213 e-102
AE017343_495(AE017343|pid:none) Cryptococcus neoformans var. neo... 194 1e-99
protein update 2009. 6.20
PSORT

psg: 0.79 gvh: 0.46 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for VFH230 is cyt

5' end seq. ID VFH230F
5' end seq.
>VFH230F.Seq
ACTGTTGGCCTACTGGNATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAA
TGTCAAAAACTCCAGCTAAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACC
ACCTCCAAATGGGTGTTGTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTAT
TATGTAAAATGTCAATTCCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTAT
CACGTTGCGCTGTTCCAGATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGA
GTGAAGTCCCATCTTATTTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAA
CTGGTGCTGGTCTTGGTAATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACC
ATATGATTCGTGCCTTTGAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAG
TCAGAGATTTAGATATCATTTCAAAAGAATTAATTGCCAAAGATATTGAATTCACAACTA
AAGCTTTAAAAACTTTACAAACCTCTTTAAAAAATAAAA----------
Length of 5' end seq. 579
3' end seq. ID VFH230Z
3' end seq.
>VFH230Z.Seq
----------TTTAAAAAATAAAACCAATTGATAAAGCTAAACCAAGTTGAACTTGGTAC
TTATAATAAAGTTTTAGAATTATTAGAATCAGGTAAACATGTAAGATATGGTACTTATTC
AAATGCTGAAACTGAACATGTTCGTGATTTACATTTATTGACATCAAAACCAGCAATTTA
TTTAATCAATCTTTCTGAAGAAGATTTCATTAGAAAGAAGAATAAATGGTTAGCAAAGAT
TAAAGCATGGGTTGATGAAAATGGTGGTGGTACAATGATTCCAGTTTCAGTAAGTTTTGA
AAAAGCTTTATTGGATTTATCTTCAGATGATGAAAGAAAAGCATATGAAAAAGAAAAAGG
TGCAGTTAGTATTATGCCAAAAATCATTAAAACTGGTTACAGCACATTAAATCTCATCAA
TTTCTTTACATGTGGTAAAGATGAAGTTAGAAGTTGGTGTTTACAAAAAGGTAACAAAGC
TCCACAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAAGGTTTCATTATGGCTGAAAC
TATGGCTTATTCTGACTTTTTCGAATTAAAATCTGAAGCTGAATGTAAATCAAGAGGAAA
ATATAGAATGGAAGGTAAAAACTNATGAAGTTGTTGATGGTGATATTATTTTNCTTCAAA
TTNCAACGTANCAAATATAANAAAA
Length of 3' end seq. 675
Connected seq. ID VFH230P
Connected seq.
>VFH230P.Seq
ACTGTTGGCCTACTGGNATATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAA
TGTCAAAAACTCCAGCTAAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACC
ACCTCCAAATGGGTGTTGTTGGTATGCCAAATGTTGGTAAAAGTTCATTGTTCAATTTAT
TATGTAAAATGTCAATTCCAGCTGAAAATTTCCCATTTTGTACTATTGATCCAAATTTAT
CACGTTGCGCTGTTCCAGATGAACGTTATACTTGGTTATGTGAACATTGGAAACCAAAGA
GTGAAGTCCCATCTTATTTACAAATCACTGATATTGCTGGTTTAGTTAAAGGTGCTTCAA
CTGGTGCTGGTCTTGGTAATGCTTTCCTTTCTCACATTCAACAAGTCGATGGTATTTACC
ATATGATTCGTGCCTTTGAAAATGATGAAATCATTCATGTTGAAGATTCAGTCGACCCAG
TCAGAGATTTAGATATCATTTCAAAAGAATTAATTGCCAAAGATATTGAATTCACAACTA
AAGCTTTAAAAACTTTACAAACCTCTTTAAAAAATAAAA----------TTTAAAAAATA
AAACCAATTGATAAAGCTAAACCAAGTTGAACTTGGTACTTATAATAAAGTTTTAGAATT
ATTAGAATCAGGTAAACATGTAAGATATGGTACTTATTCAAATGCTGAAACTGAACATGT
TCGTGATTTACATTTATTGACATCAAAACCAGCAATTTATTTAATCAATCTTTCTGAAGA
AGATTTCATTAGAAAGAAGAATAAATGGTTAGCAAAGATTAAAGCATGGGTTGATGAAAA
TGGTGGTGGTACAATGATTCCAGTTTCAGTAAGTTTTGAAAAAGCTTTATTGGATTTATC
TTCAGATGATGAAAGAAAAGCATATGAAAAAGAAAAAGGTGCAGTTAGTATTATGCCAAA
AATCATTAAAACTGGTTACAGCACATTAAATCTCATCAATTTCTTTACATGTGGTAAAGA
TGAAGTTAGAAGTTGGTGTTTACAAAAAGGTAACAAAGCTCCACAAGCTGCTGGTGTCAT
TCACACTGATTTCGAAAAAGGTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTTTT
CGAATTAAAATCTGAAGCTGAATGTAAATCAAGAGGAAAATATAGAATGGAAGGTAAAAA
CTNATGAAGTTGTTGATGGTGATATTATTTTNCTTCAAATTNCAACGTANCAAATATAAN
AAAA
Length of connected seq. 1254
Full length Seq ID -
Full length Seq. -
Length of full length seq. -