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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFH226
Library VF
(Link to library)
Clone ID VFH226
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11646-1
Original site URL
Representative seq. ID VFH226Z
(Link to Original site)
Representative DNA sequence 
>VFH226 (VFH226Q) /CSM/VF/VFH2-B/VFH226Q.Seq.d/
XXXXXXXXXXAAGCAGCATTAAGAATGATTCGTCCAGGTAAAACATCAAATGAAGTCACT
CAAGTCATTGAAAAGATTTCCGATATGTATGGCGTCACTAGTGTTTCAGGTATTTTATCA
CACGAATTAAAACGTTTCATTATCGATGGTGAAAAAGTAATCTTCTCAAAGAATGAACCA
TCACAAAAGATTCAAACCTATGAATTCCAAGAGAATGAAGTTTACTGCATCGATATCGTC
ATGAGCACTGGTGAAGGTAAAGCTCGTGAAGAAGCTGATCGTCCAACCATTTACAGAAGA
AATTTAGATAGCACTTACAAATTAAAATCAAAGGCCTCTCGTGATTTCAAAGATCAAATC
GTTAAACGTTACTCTGCCCTTCCATTCCCATTAAGAAACTTTGATGAAAAAGTTAGCAAA
CTCGGTTTGGTCGAACTCGTTGAACATCAAGTTTTAGCCGCTTACCCAGTACTCTTTGAT
AGATCCGGTTGTGAAGTCGTTCAATTCAAAACTACCGTTTTAGTCTTACCAAATGGTAAC
CATAAACTCATTGGTACTGAATTCCCATTACCATTCGTTAGATCAGAATTCTCTGTCACT
GATGATGCCATCAAAGCTTTAATCGCTTCACCATTGAAAATTAATAAAAAAGCTGCCAAA
AAAGCTACCGCCACTACCACTGATGTTAAAATGCAATAAATAAGAAATTAAAAATTTTAA
AAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---AALRMIRPGKTSNEVTQVIEKISDMYGVTSVSGILSHELKRFIIDGEKVIFSKNEPS
QKIQTYEFQENEVYCIDIVMSTGEGKAREEADRPTIYRRNLDSTYKLKSKASRDFKDQIV
KRYSALPFPLRNFDEKVSKLGLVELVEHQVLAAYPVLFDRSGCEVVQFKTTVLVLPNGNH
KLIGTEFPLPFVRSEFSVTDDAIKALIASPLKINKKAAKKATATTTDVKMQ*irn*kf*k
Translated Amino Acid sequence (All Frames) 
Frame A:
---ssikndssr*nik*shssh*kdfryvwrh*cfryfitriktfhyrw*ksnllke*ti
tkdsnl*ipre*sllhryrhehw*r*ss*rs*ssnhlqkkfr*hlqikikgls*fqrsnr
*tllcpsipikkl**ks*qtrfgrtr*tssfsrlpstl**irl*srsiqnyrfsltkw*p
*thwy*ipitir*irilch**chqsfnrftien**kscqksyrhyh*c*nainkklkilk


Frame B:
---AALRMIRPGKTSNEVTQVIEKISDMYGVTSVSGILSHELKRFIIDGEKVIFSKNEPS
QKIQTYEFQENEVYCIDIVMSTGEGKAREEADRPTIYRRNLDSTYKLKSKASRDFKDQIV
KRYSALPFPLRNFDEKVSKLGLVELVEHQVLAAYPVLFDRSGCEVVQFKTTVLVLPNGNH
KLIGTEFPLPFVRSEFSVTDDAIKALIASPLKINKKAAKKATATTTDVKMQ*irn*kf*k


Frame C:
---qh*e*fvqvkhqmkslkslkrfpicmaslvfqvfyhtn*nvslsmvkk*ssqrmnhh
krfkpmnskrmkftasiss*alvkvklvkklivqpfteei*ialtn*nqrplviskiksl
nvtlpfhsh*etlmkklansvwsnslnikf*pltqyslidpvvksfnsklpf*syqmvti
nslvlnshyhsldqnslslmmpskl*slhh*klikklpkklpplplmlkcnk*eiknfk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFH226 (VFH226Q) /CSM/VF/VFH2-B/VFH226Q.Seq.d/                       1413   0.0
CHB686 (CHB686Q) /CSM/CH/CHB6-D/CHB686Q.Seq.d/                       1370   0.0
AFE275 (AFE275Q) /CSM/AF/AFE2-D/AFE275Q.Seq.d/                       1370   0.0
SLA750 (SLA750Q) /CSM/SL/SLA7-C/SLA750Q.Seq.d/                       1362   0.0
CHB444 (CHB444Q) /CSM/CH/CHB4-B/CHB444Q.Seq.d/                       1362   0.0
CHB196 (CHB196Q) /CSM/CH/CHB1-D/CHB196Q.Seq.d/                       1362   0.0
CFK194 (CFK194Q) /CSM/CF/CFK1-D/CFK194Q.Seq.d/                       1362   0.0
AFI525 (AFI525Q) /CSM/AF/AFI5-B/AFI525Q.Seq.d/                       1362   0.0
AFM506 (AFM506Q) /CSM/AF/AFM5-A/AFM506Q.Seq.d/                       1356   0.0
VFG165 (VFG165Q) /CSM/VF/VFG1-C/VFG165Q.Seq.d/                       1354   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U61403|U61403.1 Dictyostelium discoideum PrlA (prlA) mRNA, partial cds.  1354   0.0    1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.002  14
AC116101|AC116101.2 Dictyostelium discoideum chromosome 2 map complement(427476-387492) strain AX4, complete sequence.    40   0.006  6
AC069399|AC069399.2 Homo sapiens chromosome 3 clone RP11-348L20 map 3p, WORKING DRAFT SEQUENCE, 46 unordered pieces.    52   0.011  1
BG640152|BG640152.1 SD11114.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD11114 5, mRNA sequence.    52   0.011  1
AC110769|AC110769.2 Homo sapiens chromosome 2 clone RP11-141B14, complete sequence.    52   0.011  1
AC023877|AC023877.3 Homo sapiens chromosome 2 clone RP11-76I9 map 2, WORKING DRAFT SEQUENCE, 9 unordered pieces.    52   0.011  1
AC026208|AC026208.2 Homo sapiens chromosome 3 clone RP11-659N21 map 3p, WORKING DRAFT SEQUENCE, 28 unordered pieces.    52   0.011  1
AC027120|AC027120.4 Homo sapiens chromosome 3 clone RP11-141B14 map 3p, WORKING DRAFT SEQUENCE, 7 unordered pieces.    52   0.011  1
AC069268|AC069268.1 Homo sapiens chromosome 3p clone RP11-348I20, WORKING DRAFT SEQUENCE, 31 unordered pieces.    52   0.011  1
dna update 2004. 2.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXG4) RecName: Full=Proliferation-associated protein A;            419   e-116
DQ519359_1(DQ519359|pid:none) Ammopiptanthus mongolicus cold-ind...   177   3e-43
BC044287_1(BC044287|pid:none) Xenopus laevis similar to prolifer...   172   7e-42
BC073401_1(BC073401|pid:none) Xenopus laevis MGC80858 protein, m...   171   2e-41
DQ995336_1(DQ995336|pid:none) Solanum tuberosum EBP1 mRNA, compl...   171   2e-41
EF146979_1(EF146979|pid:none) Populus trichocarpa clone WS01225_...   171   3e-41
AF020787_1(AF020787|pid:none) Oryza sativa DNA-binding protein G...   171   3e-41
AY449462_19(AY449462|pid:none) Oikopleura dioica clone BACOIKO00...   170   4e-41
EF085029_1(EF085029|pid:none) Picea sitchensis clone WS0291_E07 ...   170   5e-41
U87954_1(U87954|pid:none) Human erbB3 binding protein EBP1 mRNA,...   169   8e-41
protein update 2009. 6.20
PSORT 

 psg: 0.66  gvh: 0.53  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: cytoplasmic
	 20.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VFH226 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFH226Z
3' end seq. 
>VFH226Z.Seq
----------AAGCAGCATTAAGAATGATTCGTCCAGGTAAAACATCAAATGAAGTCACT
CAAGTCATTGAAAAGATTTCCGATATGTATGGCGTCACTAGTGTTTCAGGTATTTTATCA
CACGAATTAAAACGTTTCATTATCGATGGTGAAAAAGTAATCTTCTCAAAGAATGAACCA
TCACAAAAGATTCAAACCTATGAATTCCAAGAGAATGAAGTTTACTGCATCGATATCGTC
ATGAGCACTGGTGAAGGTAAAGCTCGTGAAGAAGCTGATCGTCCAACCATTTACAGAAGA
AATTTAGATAGCACTTACAAATTAAAATCAAAGGCCTCTCGTGATTTCAAAGATCAAATC
GTTAAACGTTACTCTGCCCTTCCATTCCCATTAAGAAACTTTGATGAAAAAGTTAGCAAA
CTCGGTTTGGTCGAACTCGTTGAACATCAAGTTTTAGCCGCTTACCCAGTACTCTTTGAT
AGATCCGGTTGTGAAGTCGTTCAATTCAAAACTACCGTTTTAGTCTTACCAAATGGTAAC
CATAAACTCATTGGTACTGAATTCCCATTACCATTCGTTAGATCAGAATTCTCTGTCACT
GATGATGCCATCAAAGCTTTAATCGCTTCACCATTGAAAATTAATAAAAAAGCTGCCAAA
AAAGCTACCGCCACTACCACTGATGTTAAAATGCAATAAATAAGAAATTAAAAATTTTAA
AAA
Length of 3' end seq. 713
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -