AFM579
Library AF
(Link to library)
Clone ID AFM579
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM579 (AFM579Q) /CSM/AF/AFM5-D/AFM579Q.Seq.d/
ATTCATCACCCTACAATTTAATTACATACATATATATATATAAACAATAATAAAAATGGG
TTTCCGTTTCTTAGATATTGTTAAACCATTTACCTCACTCGTTCCAGAGGTTGGTCAACC
AGATAGAAAAATTCCTTTCCGTGAAAAGGTTCTTTGGACAGCAATTTGTTTATTCATTTT
CTTAGTTTGCAGTCAAATTCCACTTTATGGTATTAGATCAACTGATTCATCAGATCCATT
TTACTGGGCTAAAGTTATTATGGCCTCAAACAGAGGTACTTTAATGGAATTAGGTATTTC
ACCAATCGTTACATCAGGTATGGTTATGCAATTATTAGCAGGTGCCAAATTAATTGAAAT
TGATCAATCTGTTAAAGCCGATAGAGATTTATTCTCTGCTGCCCAAAAATTATTTGGTAT
GTTAATTTGTGTAGGTCAAGGTGTAGCTTATATTTGGAGTGGGTTCATATGGTGATCCAG
CAGTTTTAGGATTTGGTAACTGCTTTTTAATTXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence
fitlqfnyihiyi*TIIKMGFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIF
LVCSQIPLYGIRSTDSSDPFYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEI
DQSVKADRDLFSAAQKLFGMLICVGQGVAYIWSGFIW*sssfriw*llfn---


Translated Amino Acid sequence (All Frames)
Frame A:
ihhpti*lhtyiyinnnkngfpflryc*tiyltrsrgwstr*knsfp*kgsldsnlfihf
lslqsnstlwy*in*firsillg*syyglkqryfngiryftnryirygyaiisrcqin*n
*sic*sr*rfilccpkiiwyvnlcrsrcslylewvhmviqqf*dlvtaf*---


Frame B:
fitlqfnyihiyi*TIIKMGFRFLDIVKPFTSLVPEVGQPDRKIPFREKVLWTAICLFIF
LVCSQIPLYGIRSTDSSDPFYWAKVIMASNRGTLMELGISPIVTSGMVMQLLAGAKLIEI
DQSVKADRDLFSAAQKLFGMLICVGQGVAYIWSGFIW*sssfriw*llfn---


Frame C:
sspynlityiyiykq**kwvsvs*illnhlphsfqrlvnqiekflsvkrffgqqfvysfs
*favkfhfmvldqlihqihftglkllwpqtevl*wn*vfhqslhqvwlcny*qvpn*lkl
inllkpieiysllpknylvc*fv*vkv*lifgvgsygdpavlgfgncfl---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM579 (AFM579Q) /CSM/AF/AFM5-D/AFM579Q.Seq.d/ 932 0.0
VSK441 (VSK441Q) /CSM/VS/VSK4-B/VSK441Q.Seq.d/ 916 0.0
VFN603 (VFN603Q) /CSM/VF/VFN6-A/VFN603Q.Seq.d/ 916 0.0
VFM328 (VFM328Q) /CSM/VF/VFM3-B/VFM328Q.Seq.d/ 916 0.0
VFK877 (VFK877Q) /CSM/VF/VFK8-D/VFK877Q.Seq.d/ 916 0.0
VFI788 (VFI788Q) /CSM/VF/VFI7-D/VFI788Q.Seq.d/ 916 0.0
VFH420 (VFH420Q) /CSM/VF/VFH4-A/VFH420Q.Seq.d/ 916 0.0
VFF234 (VFF234Q) /CSM/VF/VFF2-B/VFF234Q.Seq.d/ 916 0.0
VFA180 (VFA180Q) /CSM/VF/VFA1-D/VFA180Q.Seq.d/ 916 0.0
SFL113 (SFL113Q) /CSM/SF/SFL1-A/SFL113Q.Seq.d/ 916 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ329971) Dictyostelium discoideum cDNA clone:dda26m19, 5' ... 932 0.0 2
(BJ328572) Dictyostelium discoideum cDNA clone:dda28o13, 5' ... 833 0.0 3
(BJ327677) Dictyostelium discoideum cDNA clone:dda21i11, 5' ... 833 0.0 3
(BJ324686) Dictyostelium discoideum cDNA clone:dda7a18, 5' e... 833 0.0 3
(BJ413327) Dictyostelium discoideum cDNA clone:ddv15h06, 5' ... 833 0.0 3
(BJ327752) Dictyostelium discoideum cDNA clone:dda21k13, 5' ... 833 0.0 3
(BJ324347) Dictyostelium discoideum cDNA clone:dda5j24, 5' e... 833 0.0 3
(BJ327948) Dictyostelium discoideum cDNA clone:dda22h07, 5' ... 833 0.0 3
(BJ329474) Dictyostelium discoideum cDNA clone:dda25i03, 5' ... 833 0.0 3
(BJ327113) Dictyostelium discoideum cDNA clone:dda19o05, 5' ... 833 0.0 3
dna update 2009. 4.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54XK2) RecName: Full=Protein transport protein Sec61 subunit a... 264 2e-75
AY737549_1(AY737549|pid:none) Toxoptera citricida probable trans... 199 2e-51
AY064125_1(AY064125|pid:none) Aedes aegypti clone bR19Mc3 probab... 196 1e-50
AB062670_1(AB062670|pid:none) Drosophila melanogaster mRNA for D... 196 1e-50
BC026179_1(BC026179|pid:none) Homo sapiens Sec61 alpha 2 subunit... 194 2e-50
AK017615_1(AK017615|pid:none) Mus musculus 8 days embryo whole b... 194 2e-50
AL928924_6(AL928924|pid:none) Mouse DNA sequence from clone RP23... 194 2e-50
FJ425873_1(FJ425873|pid:none) Bombyx mori transport protein Sec6... 197 2e-50
AF392805_1(AF392805|pid:none) Aedes aegypti strain RED probable ... 195 3e-50
BT059399_1(BT059399|pid:none) Salmo salar clone ssal-rgf-537-290... 194 4e-50
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM579 is

5' end seq. ID AFM579F
5' end seq.
>AFM579F.Seq
ATTCATCACCCTACAATTTAATTACATACATATATATATATAAACAATAATAAAAATGGG
TTTCCGTTTCTTAGATATTGTTAAACCATTTACCTCACTCGTTCCAGAGGTTGGTCAACC
AGATAGAAAAATTCCTTTCCGTGAAAAGGTTCTTTGGACAGCAATTTGTTTATTCATTTT
CTTAGTTTGCAGTCAAATTCCACTTTATGGTATTAGATCAACTGATTCATCAGATCCATT
TTACTGGGCTAAAGTTATTATGGCCTCAAACAGAGGTACTTTAATGGAATTAGGTATTTC
ACCAATCGTTACATCAGGTATGGTTATGCAATTATTAGCAGGTGCCAAATTAATTGAAAT
TGATCAATCTGTTAAAGCCGATAGAGATTTATTCTCTGCTGCCCAAAAATTATTTGGTAT
GTTAATTTGTGTAGGTCAAGGTGTAGCTTATATTTGGAGTGGGTTCATATGGTGATCCAG
CAGTTTTAGGATTTGGTAACTGCTTTTTAATTXXXXXXXXXX
Length of 5' end seq. 522
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -