VFH215
Library VF
(Link to library)
Clone ID VFH215
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16529-1
Original site URL
Representative seq. ID VFH215F
(Link to Original site)
Representative DNA sequence
>VFH215 (VFH215Q) /CSM/VF/VFH2-A/VFH215Q.Seq.d/
AAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAA
ATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAG
GTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGG
TTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAG
GAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTC
TTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCA
ACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATA
AGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCAC
CAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATG
TTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
infkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLV
GSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVN
KVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYV
VNGSVYFKYSPTT---


Translated Amino Acid sequence (All Frames)
Frame A:
k*iskvkgivlkikkcllmqik*nsslvktalvnhlnttkvkl*dstmvingminschvw
lvqmldvtfgsimklilqlqensknwlkavqtmi*pq*mvfqssksyqelfngqlmlkls
tkliqllvhmk*pllhtklirllakmvmtlfncqfqnllhqilkllai*qfvkhihhmtm
l*mevftlntpqq---


Frame B:
nkfqk*kv*y*klknvc*ck*skillw*klhw*ii*iqqr*nckiqqw**me**ihvmfg
wfkc*m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsfkvpsltrsfsmgs*c*ncq
qs*fncwfi*ndhysips**gclqrw**lcsiansktystrf*nc*pfnsssntyti*lc
ckwkcll*ilpnn---


Frame C:
infkskrysikn*KMSVDANKVKFFFGKNCTGESFEYNKGETVRFNNGDKWNDKFMSCLV
GSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVN
KVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSHLTVRQTHTPYDYV
VNGSVYFKYSPTT---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHL872 (VHL872Q) /CSM/VH/VHL8-C/VHL872Q.Seq.d/ 1065 0.0
VHI219 (VHI219Q) /CSM/VH/VHI2-A/VHI219Q.Seq.d/ 1065 0.0
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/ 1065 0.0
VHG454 (VHG454Q) /CSM/VH/VHG4-C/VHG454Q.Seq.d/ 1065 0.0
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/ 1065 0.0
VHB484 (VHB484Q) /CSM/VH/VHB4-D/VHB484Q.Seq.d/ 1065 0.0
VHB309 (VHB309Q) /CSM/VH/VHB3-A/VHB309Q.Seq.d/ 1065 0.0
VFN638 (VFN638Q) /CSM/VF/VFN6-B/VFN638Q.Seq.d/ 1065 0.0
VFM307 (VFM307Q) /CSM/VF/VFM3-A/VFM307Q.Seq.d/ 1065 0.0
VFJ167 (VFJ167Q) /CSM/VF/VFJ1-C/VFJ167Q.Seq.d/ 1065 0.0

own update 2002.12.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds. 1065 0.0 1
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds. 1043 0.0 1
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds. 628 0.0 3
AC022629|AC022629.3 Homo sapiens clone RP11-24O13, WORKING DRAFT SEQUENCE, 25 unordered pieces. 48 0.14 1
AC120839|AC120839.37 Pan troglodytes clone rp43-5n22, WORKING DRAFT SEQUENCE, 5 ordered pieces. 48 0.14 1
AC145214|AC145214.1 Homo sapiens fosmid clone XXFOS-82587F5 from 2, complete sequence. 48 0.14 1
AC120782|AC120782.25 Pan troglodytes clone rp43-45g12, complete sequence. 48 0.14 1
AC120781|AC120781.22 Pan troglodytes clone rp43-28m17, complete sequence. 48 0.14 1
AC073869|AC073869.5 Homo sapiens BAC clone RP11-109E12 from 2, complete sequence. 48 0.14 1
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3. 34 0.24 10
dna update 2004. 2.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ... 378 e-104
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k... 372 e-102
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso... 84 4e-15
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a... 49 8e-05
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ... 45 0.001
CU207366_3569(CU207366|pid:none) Gramella forsetii KT0803 comple... 34 3.4
CP000685_4711(CP000685|pid:none) Flavobacterium johnsoniae UW101... 33 5.8
CP000094_133(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, c... 32 9.8

protein update 2009. 2.14
PSORT

psg: 0.77 gvh: 0.46 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFH215 is cyt

5' end seq. ID VFH215F
5' end seq.
>VFH215F.Seq
AAATAAATTTCAAAAGTAAAAGGTATAGTATTAAAAATTAAAAAATGTCTGTTGATGCAA
ATAAAGTAAAATTCTTCTTTGGTAAAAACTGCACTGGTGAATCATTTGAATACAACAAAG
GTGAAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGG
TTGGTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAG
GAAAATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTC
TTTCAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCA
ACAAAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATA
AGGTTGCTTGCAAAGATGGTGATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCAC
CAGATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATG
TTGTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTG----------
Length of 5' end seq. 582
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -