NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFH206
Library VF
(Link to library)
Clone ID VFH206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16487-1
Original site URL
Representative seq. ID VFH206P
(Link to Original site)
Representative DNA sequence 
>VFH206 (VFH206Q) /CSM/VF/VFH2-A/VFH206Q.Seq.d/
AATTTTATTTTATTTTATTTTAATTAAATTTTATTTTTTTTTAATTTATTTTTTTTTTTT
AATCCTTAAACAATTNGTAAAANGGCCTTAAAAACCATTTNGTTTTTTTTTTNATTATTT
AAATTTTTTTTTTTTCCCTXXXXXXXXXXGATTGGGGTAGACTATATTGATGAAAGTGAG
GTTTTAACAATTGCAGATAATGAAAATCATATTGACAAATCCGAATTTAAAGTACCATTC
GTTTGTGGTTGTAGAAATCTTGGTGAAGCTTTACGTCGTATCTCTGAAGGTGCCGCTATG
ATTCGTACAAAAGGTGAGGCTGGCACTGGTGATGTGGTTGAAGCAGTTCGTCATGCTCGT
GCAGTTAATAAAGAAATTAAAAAAATTCAAAATATGGACCCACATGAACTTTACACATAC
GCCAAGGAAATTTAAGCACCACTCGAATTAGTTAAAGAAGTTAAAAGATTAGGTAGACTA
CCAGTTGTCAATTTCGCTGCTGGTGGTGTTGCCACTCCCGCTGATGCTGCAATGATGATG
CAATTAGGTATGGATGGTGTTTTCGTTGGTTCCTGGTATCTTCAAAAGCGGTGATCCAGC
CAAAAGAGCAAAAGCAATCGTTCAAGCTGTAACTCATTTCAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nfilfyfn*ilfffnlffffnp*TIXKXALKTIXFFFXLFKFFFFP---

---IGVDYIDESEVLTIADNENHIDKSEFKVPFVCGCRNLGEALRRISEGAAMIRTKGEA
GTGDVVEAVRHARAVNKEIKKIQNMDPHELYTYAKEI*aplelvkevkrlgrlpvvnfaa
ggvatpadaammmqlgmdgvfvgswylqkr*ssqksksnrsscnsfq
Translated Amino Acid sequence (All Frames) 
Frame A:
nfilfyfn*ilfffnlffffnp*TIXKXALKTIXFFFXLFKFFFFP---

---dwgrly**k*gfnncr**ksy*qiri*stirlwl*ksw*sftsyl*rcrydsykr*g
whw*cg*sssscscs**rn*knskygpt*tlhirqgnlsttris*rs*kir*ttscqfrc
wwcchsr*ccnddairygwcfrwflvsskaviqpkeqkqsfkl*lisi

Frame B:
ilfyfilikfyffliyffflilkqxvkxp*kpfxfffxylnffffp---

---IGVDYIDESEVLTIADNENHIDKSEFKVPFVCGCRNLGEALRRISEGAAMIRTKGEA
GTGDVVEAVRHARAVNKEIKKIQNMDPHELYTYAKEI*aplelvkevkrlgrlpvvnfaa
ggvatpadaammmqlgmdgvfvgswylqkr*ssqksksnrsscnsfq

Frame C:
fyfilf*lnfiff*fifff*slnnx*xglknhxvffxii*ifffs---

---lg*tilmkvrf*qlqimkiiltnpnlkyhsfvvveilvklyvvslkvpl*fvqkvrl
alvmwlkqfvmlvqlikklkkfkiwthmnfthtprkfkhhsn*lkklkd*vdyqlsisll
vvlplplmlq**cn*vwmvfslvpgifksgdpakrakaivqavthfn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFH206 (VFH206Q) /CSM/VF/VFH2-A/VFH206Q.Seq.d/                        940   0.0
VFB322 (VFB322Q) /CSM/VF/VFB3-A/VFB322Q.Seq.d/                        916   0.0
VFI277 (VFI277Q) /CSM/VF/VFI2-D/VFI277Q.Seq.d/                        902   0.0
VSH175 (VSH175Q) /CSM/VS/VSH1-D/VSH175Q.Seq.d/                        841   0.0
VSA723 (VSA723Q) /CSM/VS/VSA7-A/VSA723Q.Seq.d/                        783   0.0
VSH148 (VSH148Q) /CSM/VS/VSH1-B/VSH148Q.Seq.d/                        781   0.0
VFH235 (VFH235Q) /CSM/VF/VFH2-B/VFH235Q.Seq.d/                        690   0.0
VSE187 (VSE187Q) /CSM/VS/VSE1-D/VSE187Q.Seq.d/                        601   e-171
VFF330 (VFF330Q) /CSM/VF/VFF3-B/VFF330Q.Seq.d/                        571   e-162
SSH452 (SSH452Q) /CSM/SS/SSH4-C/SSH452Q.Seq.d/                        535   e-151
own update 2001.12. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CB893357|CB893357.1 EST646149 HOGA Medicago truncatula cDNA clone HOGA-27H21, mRNAsequence.    68   3e-17  5
CB893600|CB893600.1 EST646392 HOGA Medicago truncatula cDNA clone HOGA-28M16, mRNA sequence.    68   4e-17  5
Z99164|Z99164.2 S.pombe chromosome I cosmid c29B12.                72   4e-16  3
AL409181|AL409181.1 T3 end of clone AV0AA013C07 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    58   4e-15  3
AL400556|AL400556.1 T7 end of clone AS0AA022D05 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    62   6e-14  3
AX569778|AX569778.1 Sequence 2987 from Patent WO02077021.          64   6e-14  2
AR071395|AR071395.1 Sequence 4 from patent US 5910580.             64   1e-13  2
BD003705|BD003705.1 Polynucleotide of Streptococcus pneumoniae and sequence.    64   2e-13  2
AR218793|AR218793.1 Sequence 25 from patent US 6420135.            64   2e-13  2
AE008502|AE008502.1 Streptococcus pneumoniae R6 section 118 of 184 of the complete genome.    64   7e-13  2
dna update 2004. 2.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54J47) RecName: Full=Probable pyridoxine biosynthesis protein ...   249   2e-73
CP001324_242(CP001324|pid:none) Micromonas sp. RCC299 chromosome...   194   5e-56
(A5UY94) RecName: Full=Pyridoxal biosynthesis lyase pdxS;       ...   196   2e-55
(A9WFT9) RecName: Full=Pyridoxal biosynthesis lyase pdxS;       ...   195   4e-55
CP001337_2843(CP001337|pid:none) Chloroflexus aggregans DSM 9485...   195   2e-54
AY532656_1(AY532656|pid:none) Nicotiana tabacum putative pyridox...   190   6e-54
(Q8L940) RecName: Full=Pyridoxal biosynthesis protein PDX1.3;   ...   190   6e-54
DQ139265_1(DQ139265|pid:none) Glycine max pyridoxine biosynthesi...   189   6e-54
CP000583_18(CP000583|pid:none) Ostreococcus lucimarinus CCE9901 ...   187   6e-54
(O80448) RecName: Full=Pyridoxal biosynthesis protein PDX1.1; Al...   192   8e-54
protein update 2009. 6.20
PSORT 

 psg: 0.97  gvh: 0.39  alm: 0.30  top: 0.20  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VFH206 is end
5' end seq. ID VFH206F
5' end seq. 
>VFH206F.Seq
AATTTTATTTTATTTTATTTTAATTAAATTTTATTTTTTTTTAATTTATTTTTTTTTTTT
AATCCTTAAACAATTNGTAAAANGGCCTTAAAAACCATTTNGTTTTTTTTTTNATTATTT
AAATTTTTTTTTTTTCCCT----------
Length of 5' end seq. 139
3' end seq. ID VFH206Z
3' end seq. 
>VFH206Z.Seq
----------GATTGGGGTAGACTATATTGATGAAAGTGAGGTTTTAACAATTGCAGATA
ATGAAAATCATATTGACAAATCCGAATTTAAAGTACCATTCGTTTGTGGTTGTAGAAATC
TTGGTGAAGCTTTACGTCGTATCTCTGAAGGTGCCGCTATGATTCGTACAAAAGGTGAGG
CTGGCACTGGTGATGTGGTTGAAGCAGTTCGTCATGCTCGTGCAGTTAATAAAGAAATTA
AAAAAATTCAAAATATGGACCCACATGAACTTTACACATACGCCAAGGAAATTTAAGCAC
CACTCGAATTAGTTAAAGAAGTTAAAAGATTAGGTAGACTACCAGTTGTCAATTTCGCTG
CTGGTGGTGTTGCCACTCCCGCTGATGCTGCAATGATGATGCAATTAGGTATGGATGGTG
TTTTCGTTGGTTCCTGGTATCTTCAAAAGCGGTGATCCAGCCAAAAGAGCAAAAGCAATC
GTTCAAGCTGTAACTCATTTCAATA
Length of 3' end seq. 495
Connected seq. ID VFH206P
Connected seq. 
>VFH206P.Seq
AATTTTATTTTATTTTATTTTAATTAAATTTTATTTTTTTTTAATTTATTTTTTTTTTTT
AATCCTTAAACAATTNGTAAAANGGCCTTAAAAACCATTTNGTTTTTTTTTTNATTATTT
AAATTTTTTTTTTTTCCCT----------GATTGGGGTAGACTATATTGATGAAAGTGAG
GTTTTAACAATTGCAGATAATGAAAATCATATTGACAAATCCGAATTTAAAGTACCATTC
GTTTGTGGTTGTAGAAATCTTGGTGAAGCTTTACGTCGTATCTCTGAAGGTGCCGCTATG
ATTCGTACAAAAGGTGAGGCTGGCACTGGTGATGTGGTTGAAGCAGTTCGTCATGCTCGT
GCAGTTAATAAAGAAATTAAAAAAATTCAAAATATGGACCCACATGAACTTTACACATAC
GCCAAGGAAATTTAAGCACCACTCGAATTAGTTAAAGAAGTTAAAAGATTAGGTAGACTA
CCAGTTGTCAATTTCGCTGCTGGTGGTGTTGCCACTCCCGCTGATGCTGCAATGATGATG
CAATTAGGTATGGATGGTGTTTTCGTTGGTTCCTGGTATCTTCAAAAGCGGTGATCCAGC
CAAAAGAGCAAAAGCAATCGTTCAAGCTGTAACTCATTTCAATA
Length of connected seq. 634
Full length Seq ID -
Full length Seq. -
Length of full length seq. -