AFM578
Library AF
(Link to library)
Clone ID AFM578
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM578P
(Link to Original site)
Representative DNA sequence
>AFM578 (AFM578Q) /CSM/AF/AFM5-D/AFM578Q.Seq.d/
ATCGCCTCACTTTTTATTTTTGTATTATATTCTCTCTTTATTTCTTTTCTATATATAGAT
AAATTTTTTTTAGAAAAACTAAAAAAAAAACCTCAAACAATTAATACAAAATGGTAAACA
TTGGTGGAACTCAAGAAAAATGTACTGCATGTGCTAAAACTGTATACTTAACAGAAAAGA
TTGTAGTTGAAGATAAAGAAGATAAGAAAACTTTCCACAAATTATGTTTAAAATGTACTC
ACTGTAAGCTTACATTAAGTCTTGGTAACTATGCATCATTAAATGGNGTATTCTATTGTA
AACCACATTTCAAACAATTATTCGCCACCAAAGGTAACTACGATGAAGGTTTCGGTAAAT
CAAAACATTCTGAAAAATGGACACCACAAGCCACCCCAACTGGTACTTCTTCATTCATTC
CAGTTGAAGAATCAAAATCATCAGAAAAGAAAGAAACACCAACAACAATTTCATCAAAAT
TCTCAGGATCAACTGAAAAATGTAATCTCTGTAATAAGGCAGTATATTTAACAGAAAAGA
TTGTTGTTGAAGATAAAGAAGATAAGAAAGTNTTACATAAACAATGTTTGAAATGTACAC
ATTGNAGGGGTTGNATTAAATCTTGGTACCTATGCATCAATGGAAAGGNGTATTCTATTG
GTAAACCACATTTTCAAACAATTATTCGCCACCCAAGGGNACTATGATGNAAGGTTTXXX
XXXXXXXCCCTTTAAAGAACTNTATGCCNCTCAAGGTAATTTANATGGTGGTTTCGGTAA
ACCNAAACNCTNTGAAAAATGGGAAAATAACCCNTTNCCATATTTANAAAAGGATAGCAG
TTATGNNCCNTCCGTTGAAAAGGTTGAATNTCAAATGAATAATGNTTCATCTGAATCTGA
TGTTGATAGATTTNAAAATATTNACAATGATGATTNTGATNAACCAANAAGNCAACAACA
ACCAGTTTTTCAACCAGAANAAGAACNACNACNACAAGAANAANAAAAAGTTGAAGAACC
NATNTNTGAANAANAAGAAAAAGTTGAANAAAAAGTTGAAGAACCNGTCGCTGAACAANA
ANAANAAAAGGTTGAGGAACCNGTTGTTGCTGAANAANAAAAAGTTNAAGAACCNGTTNC
TGAAGAANAAAAAGTTGAAGAACC
sequence update 2009. 4. 3
Translated Amino Acid sequence
iaslfifvlyslfisflyidkffleklkkkpqtintkw*tlvelkknvlhvlklyt*qkr
l*lkikkirklstnyv*nvltvslh*vlvtmhh*mxysivnhisnnysppkvttmkvsvn
qnilknghhkppqlvllhsfqlknqnhqkrkkhqqqfhqnsqdqlknvisvirqyi*qkr
lllkikkirkxyinnv*NVHIXGVXLNLGTYASMERXILLVNHIFKQLFATQGXYDXRF-
--

---PFKELYAXQGNLXGGFGKPKXXEKWENNPXPYLXKDSSYXPSVEKVEXQMNNXSSES
DVDRFXNIXNDDXDXPXXQQQPVFQPEXEXXXQEXXKVEEPXXEXXEKVEXKVEEPVAEQ
XXXKVEEPVVAEXXKVXEPVXEEXKVEE


Translated Amino Acid sequence (All Frames)
Frame A:
iaslfifvlyslfisflyidkffleklkkkpqtintkw*tlvelkknvlhvlklyt*qkr
l*lkikkirklstnyv*nvltvslh*vlvtmhh*mxysivnhisnnysppkvttmkvsvn
qnilknghhkppqlvllhsfqlknqnhqkrkkhqqqfhqnsqdqlknvisvirqyi*qkr
lllkikkirkxyinnv*NVHIXGVXLNLGTYASMERXILLVNHIFKQLFATQGXYDXRF-
--

---PFKELYAXQGNLXGGFGKPKXXEKWENNPXPYLXKDSSYXPSVEKVEXQMNNXSSES
DVDRFXNIXNDDXDXPXXQQQPVFQPEXEXXXQEXXKVEEPXXEXXEKVEXKVEEPVAEQ
XXXKVEEPVVAEXXKVXEPVXEEXKVEE

Frame B:
sphflflyyilslflfyi*inff*kn*kknlkqliqngkhwwnsrkmycmc*ncilnrkd
cs*r*rr*enfpqimfkmysl*ayiksw*lciikwxill*ttfqtiirhqr*lr*rfr*i
ktf*kmdttshpnwyffihss*rikiirkerntnnnfikilrin*km*sl**gsifnrkd
cc*r*rr*esxt*tmfemytlxglx*ilvpmhqwkgvfyw*ttfsnnysppkgtmmxg--
-

---plknxmplkvixmvvsvnxnxxkngkitxxhixkriavmxxplkrlnxk*imxhlnl
mlidxkixtmmixxnqxxnnnqffnqxknxxxkxxkklknxxxxxkkklxkklknxslnx
xxkrlrnxlllxxkkxknxxlkxkklkn

Frame C:
rltfyfciifslyffsiyr*iffrktkkktsnn*ykmvniggtqekctacaktvylteki
vvedkedkktfhklclkcthckltlslgnyaslngvfyckphfkqlfatkgnydegfgks
khsekwtpqatptgtssfipveeskssekketpttisskfsgstekcnlcnkavylteki
vvedkedkkvlhkqclkcthxrgxikswylcingkxysigkphfqtiirhprxl*xkv--
-

---l*rtxcxsr*fxwwfr*txtl*kmgk*pxxifxkg*qlxxxr*kg*xsne*xfi*i*
c**ixkyxq**x*xtxkxtttsfstrxrttttrxxks*rtxx*xxrks*xks*rtxr*tx
xxkg*gtxcc*xxksxrtxx*rxks*rt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM578 (AFM578Q) /CSM/AF/AFM5-D/AFM578Q.Seq.d/ 1501 0.0
AFM428 (AFM428Q) /CSM/AF/AFM4-B/AFM428Q.Seq.d/ 1148 0.0
SFI831 (SFI831Q) /CSM/SF/SFI8-B/SFI831Q.Seq.d/ 1134 0.0
AFI579 (AFI579Q) /CSM/AF/AFI5-D/AFI579Q.Seq.d/ 1124 0.0
AFL333 (AFL333Q) /CSM/AF/AFL3-B/AFL333Q.Seq.d/ 1122 0.0
AFI783 (AFI783Q) /CSM/AF/AFI7-D/AFI783Q.Seq.d/ 1122 0.0
SFK142 (SFK142Q) /CSM/SF/SFK1-B/SFK142Q.Seq.d/ 1120 0.0
AFG813 (AFG813Q) /CSM/AF/AFG8-A/AFG813Q.Seq.d/ 1116 0.0
AFI488 (AFI488Q) /CSM/AF/AFI4-D/AFI488Q.Seq.d/ 1114 0.0
AFN280 (AFN280Q) /CSM/AF/AFN2-D/AFN280Q.Seq.d/ 1110 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ329961) Dictyostelium discoideum cDNA clone:dda26k19, 5' ... 1201 0.0 1
(BJ329531) Dictyostelium discoideum cDNA clone:dda25h08, 5' ... 1092 0.0 3
(BJ327036) Dictyostelium discoideum cDNA clone:dda18m19, 5' ... 1076 0.0 2
(BJ390132) Dictyostelium discoideum cDNA clone:dds21c11, 5' ... 1063 0.0 3
(BJ389351) Dictyostelium discoideum cDNA clone:dds18n08, 5' ... 1063 0.0 3
(BJ415178) Dictyostelium discoideum cDNA clone:ddv21o17, 5' ... 999 0.0 4
(BJ328184) Dictyostelium discoideum cDNA clone:dda23b09, 5' ... 999 0.0 3
(BJ326773) Dictyostelium discoideum cDNA clone:dda17p22, 5' ... 999 0.0 3
(BJ325375) Dictyostelium discoideum cDNA clone:dda14j04, 5' ... 999 0.0 4
(BJ327003) Dictyostelium discoideum cDNA clone:dda18f21, 5' ... 1023 0.0 3
dna update 2009. 4.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF184886_1(AF184886|pid:none) Nicotiana tabacum LIM domain prote... 87 1e-15
DQ213126_1(DQ213126|pid:none) Taeniopygia guttata clone 0058P002... 86 3e-15
AM469183_1(AM469183|pid:none) Vitis vinifera contig VV78X221882.... 83 2e-14
AC135208_4(AC135208|pid:none) Oryza sativa (japonica cultivar-gr... 83 2e-14
EF035040_1(EF035040|pid:none) Populus tremula x Populus alba LIM... 82 3e-14
EF146377_1(EF146377|pid:none) Populus trichocarpa clone WS0117_L... 82 3e-14
AJ721104_1(AJ721104|pid:none) Gallus gallus mRNA for hypothetica... 82 3e-14
T50694(T50694) transcription factor L2 [imported] - Arabidopsis ... 82 3e-14
(Q9BT23) RecName: Full=LIM domain-containing protein 2; &AK0923... 81 6e-14
EF148212_1(EF148212|pid:none) Populus trichocarpa clone WS0128_M... 81 6e-14
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM578 is

5' end seq. ID AFM578F
5' end seq.
>AFM578F.Seq
ATCGCCTCACTTTTTATTTTTGTATTATATTCTCTCTTTATTTCTTTTCTATATATAGAT
AAATTTTTTTTAGAAAAACTAAAAAAAAAACCTCAAACAATTAATACAAAATGGTAAACA
TTGGTGGAACTCAAGAAAAATGTACTGCATGTGCTAAAACTGTATACTTAACAGAAAAGA
TTGTAGTTGAAGATAAAGAAGATAAGAAAACTTTCCACAAATTATGTTTAAAATGTACTC
ACTGTAAGCTTACATTAAGTCTTGGTAACTATGCATCATTAAATGGNGTATTCTATTGTA
AACCACATTTCAAACAATTATTCGCCACCAAAGGTAACTACGATGAAGGTTTCGGTAAAT
CAAAACATTCTGAAAAATGGACACCACAAGCCACCCCAACTGGTACTTCTTCATTCATTC
CAGTTGAAGAATCAAAATCATCAGAAAAGAAAGAAACACCAACAACAATTTCATCAAAAT
TCTCAGGATCAACTGAAAAATGTAATCTCTGTAATAAGGCAGTATATTTAACAGAAAAGA
TTGTTGTTGAAGATAAAGAAGATAAGAAAGTNTTACATAAACAATGTTTGAAATGTACAC
ATTGNAGGGGTTGNATTAAATCTTGGTACCTATGCATCAATGGAAAGGNGTATTCTATTG
GTAAACCACATTTTCAAACAATTATTCGCCACCCAAGGGNACTATGATGNAAGGTTTXXX
XXXXXXX
Length of 5' end seq. 727
3' end seq. ID AFM578Z
3' end seq.
>AFM578Z.Seq
XXXXXXXXXXCCCTTTAAAGAACTNTATGCCNCTCAAGGTAATTTANATGGTGGTTTCGG
TAAACCNAAACNCTNTGAAAAATGGGAAAATAACCCNTTNCCATATTTANAAAAGGATAG
CAGTTATGNNCCNTCCGTTGAAAAGGTTGAATNTCAAATGAATAATGNTTCATCTGAATC
TGATGTTGATAGATTTNAAAATATTNACAATGATGATTNTGATNAACCAANAAGNCAACA
ACAACCAGTTTTTCAACCAGAANAAGAACNACNACNACAAGAANAANAAAAAGTTGAAGA
ACCNATNTNTGAANAANAAGAAAAAGTTGAANAAAAAGTTGAAGAACCNGTCGCTGAACA
ANAANAANAAAAGGTTGAGGAACCNGTTGTTGCTGAANAANAAAAAGTTNAAGAACCNGT
TNCTGAAGAANAAAAAGTTGAAGAACC
Length of 3' end seq. 447
Connected seq. ID AFM578P
Connected seq.
>AFM578P.Seq
ATCGCCTCACTTTTTATTTTTGTATTATATTCTCTCTTTATTTCTTTTCTATATATAGAT
AAATTTTTTTTAGAAAAACTAAAAAAAAAACCTCAAACAATTAATACAAAATGGTAAACA
TTGGTGGAACTCAAGAAAAATGTACTGCATGTGCTAAAACTGTATACTTAACAGAAAAGA
TTGTAGTTGAAGATAAAGAAGATAAGAAAACTTTCCACAAATTATGTTTAAAATGTACTC
ACTGTAAGCTTACATTAAGTCTTGGTAACTATGCATCATTAAATGGNGTATTCTATTGTA
AACCACATTTCAAACAATTATTCGCCACCAAAGGTAACTACGATGAAGGTTTCGGTAAAT
CAAAACATTCTGAAAAATGGACACCACAAGCCACCCCAACTGGTACTTCTTCATTCATTC
CAGTTGAAGAATCAAAATCATCAGAAAAGAAAGAAACACCAACAACAATTTCATCAAAAT
TCTCAGGATCAACTGAAAAATGTAATCTCTGTAATAAGGCAGTATATTTAACAGAAAAGA
TTGTTGTTGAAGATAAAGAAGATAAGAAAGTNTTACATAAACAATGTTTGAAATGTACAC
ATTGNAGGGGTTGNATTAAATCTTGGTACCTATGCATCAATGGAAAGGNGTATTCTATTG
GTAAACCACATTTTCAAACAATTATTCGCCACCCAAGGGNACTATGATGNAAGGTTT---
-------CCCTTTAAAGAACTNTATGCCNCTCAAGGTAATTTANATGGTGGTTTCGGTAA
ACCNAAACNCTNTGAAAAATGGGAAAATAACCCNTTNCCATATTTANAAAAGGATAGCAG
TTATGNNCCNTCCGTTGAAAAGGTTGAATNTCAAATGAATAATGNTTCATCTGAATCTGA
TGTTGATAGATTTNAAAATATTNACAATGATGATTNTGATNAACCAANAAGNCAACAACA
ACCAGTTTTTCAACCAGAANAAGAACNACNACNACAAGAANAANAAAAAGTTGAAGAACC
NATNTNTGAANAANAAGAAAAAGTTGAANAAAAAGTTGAAGAACCNGTCGCTGAACAANA
ANAANAAAAGGTTGAGGAACCNGTTGTTGCTGAANAANAAAAAGTTNAAGAACCNGTTNC
TGAAGAANAAAAAGTTGAAGAACC
Length of connected seq. 1154
Full length Seq ID -
Full length Seq. -
Length of full length seq. -