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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFH167
Library VF
(Link to library)
Clone ID VFH167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID VFH167P
(Link to Original site)
Representative DNA sequence 
>VFH167 (VFH167Q) /CSM/VF/VFH1-C/VFH167Q.Seq.d/
GTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC
ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT
CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG
CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG
AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG
GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA
GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT
TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC
TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACA
AATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGGTGGTTCA
ATCGTCGAAAAAGTTAACTTTTGCTGTTGCCAACTTTGAAAXXXXXXXXXXTCGAAAGAA
ACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCG
GTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACT
ACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGA
GAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAA
TCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTG
AAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lvtskqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplncihglqs
wydsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqnlqnrlgstfk
**lp*kiiqklvqikikesfhqir*tirn*rr*kin*slspshqkemfsrpchcshsssq
ikinskestrp*NPSQWVVQSSKKLTFAVANFE---

---ERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCV
AGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSR
Translated Amino Acid sequence (All Frames) 
Frame A:
vshf*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lhswvtk
lv*ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskptkpsglni*
vitsvedytktgtnqnqrklspntlnntklkkvknqlkplskpskrdvqssvslltlkft
n*n*lkrkhtslksksmggsivekvnfcccql*---

---sketrrftesvklnqktvnksqpvrlnsi*lkrlsiqwvvslttvwlnmns*clkvv
llvqerep*p*ervsplklvvlpsrkslsnssippaslvtvfikplkirlnisasrnqd

Frame B:
lvtskqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplncihglqs
wydsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqnlqnrlgstfk
**lp*kiiqklvqikikesfhqir*tirn*rr*kin*slspshqkemfsrpchcshsssq
ikinskestrp*NPSQWVVQSSKKLTFAVANFE---

---rkkqedlqnrssstrrr*tnlnr*d*irfn*kdyqsngwfrslryg*t*ilna*rlc
cwskkeslnlkkeyhhsnwsccprenhsqihrylqqvwsrsssnr*r*d*ifrrqeik

Frame C:
*sllnnnnnmshrkfeaprhgnlgfrprkraarhqgkvksfpkddrtqkvhltafmgyka
gmthvvrdlekpgskmhkkeiveavtiiecppmyivglvgyvetaqglktyktvwaqhls
dnfrrrlyknwykskskkaftkyvkqyeteegkksieaslqaikkrcsvvrviahtqvhk
lkltqkkahvleiqvngwfnrrks*llllptlk---

---ERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCV
AGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKSR
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFH167 (VFH167Q) /CSM/VF/VFH1-C/VFH167Q.Seq.d/                       1921   0.0
VFL465 (VFL465Q) /CSM/VF/VFL4-C/VFL465Q.Seq.d/                       1265   0.0
SFK358 (SFK358Q) /CSM/SF/SFK3-C/SFK358Q.Seq.d/                       1259   0.0
SFE707 (SFE707Q) /CSM/SF/SFE7-A/SFE707Q.Seq.d/                       1251   0.0
VFN433 (VFN433Q) /CSM/VF/VFN4-B/VFN433Q.Seq.d/                       1247   0.0
VFJ143 (VFJ143Q) /CSM/VF/VFJ1-B/VFJ143Q.Seq.d/                       1243   0.0
AFA793 (AFA793Q) /CSM/AF/AFA7-D/AFA793Q.Seq.d/                       1241   0.0
VFM836 (VFM836Q) /CSM/VF/VFM8-B/VFM836Q.Seq.d/                       1239   0.0
VFI511 (VFI511Q) /CSM/VF/VFI5-A/VFI511Q.Seq.d/                       1239   0.0
VFH213 (VFH213Q) /CSM/VF/VFH2-A/VFH213Q.Seq.d/                       1239   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.  1110   0.0    3
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728.          42   2e-25  8
J01351|J01351.1 S.cerevisiae ribosomal protein L3 (tcm1) gene.     46   1e-22  7
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame ORF YOR063w.    46   2e-21  7
BE641342|BE641342.1 Cri2_3_A04_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_3_A04 5', mRNA sequence.    76   5e-17  3
AL398773|AL398773.1 T7 end of clone AS0AA011B09 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    46   8e-17  6
BQ622709|BQ622709.1 CC_Contig5 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    62   1e-16  4
AL436296|AL436296.1 T3 end of clone BC0AA002E09 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    40   1e-15  7
AL436279|AL436279.1 T3 end of clone BC0AA002D12 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    40   1e-15  7
Z70678|Z70678.1 S.cerevisiae chromosome XV DNA, 54.7 kb region.    46   7e-15  8
dna update 2004. 1.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   384   e-105
Z49936_3(Z49936|pid:none) Caenorhabditis elegans Cosmid F13B10, ...   345   1e-93
AK092695_1(AK092695|pid:none) Homo sapiens cDNA FLJ35376 fis, cl...   320   5e-86
AF401554_1(AF401554|pid:none) Ictalurus punctatus ribosomal prot...   293   6e-78
BC091460_1(BC091460|pid:none) Danio rerio ribosomal protein L3, ...   293   6e-78
BT043755_1(BT043755|pid:none) Salmo salar clone HM6_0985 ribosom...   290   4e-77
AB374542_1(AB374542|pid:none) Solea senegalensis RPL3 mRNA for r...   290   4e-77
AY561514_1(AY561514|pid:none) Danio rerio ribosomal protein L3 (...   290   5e-77
AE014185_269(AE014185|pid:none) Plasmodium falciparum 3D7 chromo...   285   2e-75
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407....   280   7e-74
protein update 2009. 6.20
PSORT 

 psg: 0.75  gvh: 0.32  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.15  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VFH167 is nuc
5' end seq. ID VFH167F
5' end seq. 
>VFH167F.Seq
GTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC
ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT
CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG
CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG
AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG
GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA
GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT
TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC
TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACA
AATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGGTGGTTCA
ATCGTCGAAAAAGTTAACTTTTGCTGTTGCCAACTTTGAAA----------
Length of 5' end seq. 641
3' end seq. ID VFH167Z
3' end seq. 
>VFH167Z.Seq
----------TCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGAC
GGTAAACAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCA
ATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGT
GTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGT
CGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCAC
GGTCTTCATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGAT
Length of 3' end seq. 348
Connected seq. ID VFH167P
Connected seq. 
>VFH167P.Seq
GTTAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTC
ACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGT
CATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAG
CTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAG
AAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTG
GTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAA
GTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTT
TCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTC
TCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACA
AATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGGTGGTTCA
ATCGTCGAAAAAGTTAACTTTTGCTGTTGCCAACTTTGAAA----------TCGAAAGAA
ACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCG
GTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACT
ACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGA
GAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAA
TCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTG
AAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGAT
Length of connected seq. 989
Full length Seq ID -
Full length Seq. -
Length of full length seq. -