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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFH163
Library VF
(Link to library)
Clone ID VFH163
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09312-1|Contig-U10602-1
Original site URL
Representative seq. ID VFH163P
(Link to Original site)
Representative DNA sequence 
>VFH163 (VFH163Q) /CSM/VF/VFH1-C/VFH163Q.Seq.d/
CACTGTTGGCCTACTGGGTGCTTTTTTTATTCATATTATATAAATTACATTTATGTATAA
TCACACACACACTAAAAATTAATAAATAAAAACATCAAAAAAAAAAXXXXXXXXXXACGT
TTCAGTACCATCCTATCAAGGTGATATGATCATTCAAATTAAGTAAATCTGGTGAATTAA
TTAGATCNATTAAATTAATTGGTATTTTTAATGGTCAAGTTAGTGGTTTACCTGGTTCAT
TAGCGTTAACTAAAAATCATATTTATGTTGAAGTACCATATGCTTCTAAAAAAGAAAATC
CACCATCATCATCAGAATCATCATCATCAGAATCATCCGAGTCATCATCAGAATCATCAT
CAGAATCAAGTGGATTTTCAACTGGTTCAGCATCAGGCTCAGCATCAGGTTCATCAGGTA
CATCAGGTACATCAGGTACTGGACTTTCATCACCATTATCATTTGGTGGACATGGTAGTT
TTAAAAATATTCAAAGAAATGGAAATGATGGTGGTGATGATGATGAATTTTATTTTGGAT
CAGAATCAACATCTGATTCAGAATCATCCCATAAAGCTAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hcwptgcffysyyinyiyv*shth*KLINKNIKKK---

---VSVPSYQGDMIIQIK*iw*in*ix*inwyf*wss*wftwfisvn*ksylc*sticf*
krkstiiiriiiiriirviiriiirikwifnwfsirlsirfiryiryirywtfitiiiww
tw*f*kyskkwk*ww****ilfwirini*friip*s*
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgcffysyyinyiyv*shth*KLINKNIKKK---

---tfqyhpikvi*sfklsksgelirsikligifngqvsglpgslaltknhiyvevpyas
kkenppsssessssessesssesssessgfstgsasgsasgssgtsgtsgtglssplsfg
ghgsfkniqrngndggdddefyfgsestsdsesshka

Frame B:
tvgllgaffihii*itfmynhthtkn**iktskkk---

---rfstilsr*ydhsn*vnlvn*ldxln*lvflmvklvvylvh*r*lkiifmlkyhmll
kkkihhhhqnhhhqnhpshhqnhhqnqvdfqlvqhqaqhqvhqvhqvhqvldfhhhyhlv
dmvvlkifkememmvvmmmnfildqnqhliqnhpikl

Frame C:
llaywvlflfilyklhlciithtlkink*khqkk---

---VSVPSYQGDMIIQIK*iw*in*ix*inwyf*wss*wftwfisvn*ksylc*sticf*
krkstiiiriiiiriirviiriiirikwifnwfsirlsirfiryiryirywtfitiiiww
tw*f*kyskkwk*ww****ilfwirini*friip*s*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFH163 (VFH163Q) /CSM/VF/VFH1-C/VFH163Q.Seq.d/                        434   e-121
VFL670 (VFL670Q) /CSM/VF/VFL6-C/VFL670Q.Seq.d/                        416   e-115
VFH785 (VFH785Q) /CSM/VF/VFH7-D/VFH785Q.Seq.d/                        408   e-113
VFA786 (VFA786Q) /CSM/VF/VFA7-D/VFA786Q.Seq.d/                        400   e-111
VFM790 (VFM790Q) /CSM/VF/VFM7-D/VFM790Q.Seq.d/                        365   e-100
VFK678 (VFK678Q) /CSM/VF/VFK6-D/VFK678Q.Seq.d/                        339   3e-92
SSF588 (SSF588Q) /CSM/SS/SSF5-D/SSF588Q.Seq.d/                        238   8e-62
SSL318 (SSL318Q) /CSM/SS/SSL3-A/SSL318Q.Seq.d/                        161   1e-38
VSG620 (VSG620Q) /CSM/VS/VSG6-A/VSG620Q.Seq.d/                         54   2e-06
VHL140 (VHL140Q) /CSM/VH/VHL1-B/VHL140Q.Seq.d/                         54   2e-06
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   434   0.0    15
AC117082|AC117082.2 Dictyostelium discoideum chromosome 2 map complement(6807709-6776860) strain AX4, complete sequence.    44   4e-09  7
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    38   1e-07  12
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36   1e-07  12
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    34   2e-07  14
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    40   2e-07  14
AC113162|AC113162.7 Rattus norvegicus clone CH230-1J19, WORKING DRAFT SEQUENCE, 1 ordered piece.    36   9e-07  10
AL136985|AL136985.11 Human DNA sequence from clone RP11-63G10 on chromosome 1p32.1-32.3  Contains ESTs, STSs, GSSs and CpG islands. Contains the gene for  transcription factor AP-1 (proto-oncogen C-Jun) (P39) (GOS7) and a  novel gene.    42   3e-06  6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    44   3e-06  12
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42   4e-06  13
dna update 2004. 1.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_137(AC116984|pid:none) Dictyostelium discoideum chromos...   129   6e-30
protein update 2009. 2.13
PSORT 

 psg: 0.78  gvh: 0.12  alm: 0.63  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for VFH163 is nuc
5' end seq. ID VFH163F
5' end seq. 
>VFH163F.Seq
CACTGTTGGCCTACTGGGTGCTTTTTTTATTCATATTATATAAATTACATTTATGTATAA
TCACACACACACTAAAAATTAATAAATAAAAACATCAAAAAAAAAA----------
Length of 5' end seq. 106
3' end seq. ID VFH163Z
3' end seq. 
>VFH163Z.Seq
----------ACGTTTCAGTACCATCCTATCAAGGTGATATGATCATTCAAATTAAGTAA
ATCTGGTGAATTAATTAGATCNATTAAATTAATTGGTATTTTTAATGGTCAAGTTAGTGG
TTTACCTGGTTCATTAGCGTTAACTAAAAATCATATTTATGTTGAAGTACCATATGCTTC
TAAAAAAGAAAATCCACCATCATCATCAGAATCATCATCATCAGAATCATCCGAGTCATC
ATCAGAATCATCATCAGAATCAAGTGGATTTTCAACTGGTTCAGCATCAGGCTCAGCATC
AGGTTCATCAGGTACATCAGGTACATCAGGTACTGGACTTTCATCACCATTATCATTTGG
TGGACATGGTAGTTTTAAAAATATTCAAAGAAATGGAAATGATGGTGGTGATGATGATGA
ATTTTATTTTGGATCAGAATCAACATCTGATTCAGAATCATCCCATAAAGCTAA
Length of 3' end seq. 464
Connected seq. ID VFH163P
Connected seq. 
>VFH163P.Seq
CACTGTTGGCCTACTGGGTGCTTTTTTTATTCATATTATATAAATTACATTTATGTATAA
TCACACACACACTAAAAATTAATAAATAAAAACATCAAAAAAAAAA----------ACGT
TTCAGTACCATCCTATCAAGGTGATATGATCATTCAAATTAAGTAAATCTGGTGAATTAA
TTAGATCNATTAAATTAATTGGTATTTTTAATGGTCAAGTTAGTGGTTTACCTGGTTCAT
TAGCGTTAACTAAAAATCATATTTATGTTGAAGTACCATATGCTTCTAAAAAAGAAAATC
CACCATCATCATCAGAATCATCATCATCAGAATCATCCGAGTCATCATCAGAATCATCAT
CAGAATCAAGTGGATTTTCAACTGGTTCAGCATCAGGCTCAGCATCAGGTTCATCAGGTA
CATCAGGTACATCAGGTACTGGACTTTCATCACCATTATCATTTGGTGGACATGGTAGTT
TTAAAAATATTCAAAGAAATGGAAATGATGGTGGTGATGATGATGAATTTTATTTTGGAT
CAGAATCAACATCTGATTCAGAATCATCCCATAAAGCTAA
Length of connected seq. 570
Full length Seq ID -
Full length Seq. -
Length of full length seq. -