AFM572
Library AF
(Link to library)
Clone ID AFM572
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM572 (AFM572Q) /CSM/AF/AFM5-C/AFM572Q.Seq.d/
XXXXXXXXXXTCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTG
ATTATATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAA
CTGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTA
ACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTG
TTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGC
CAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAG
GTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATG
AAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATA
ATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAA
TGTCAAAG
sequence update 2009. 4. 3
Translated Amino Acid sequence
---PEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVN
ITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQG
KDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILM
SK


Translated Amino Acid sequence (All Frames)
Frame A:
---PEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIGATIKGYVN
ITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQG
KDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILM
SK


Frame B:
---qkktlvvmvv**imhliislktrvltlkvvihillklvqhvysinlilvqplkvmlt
llpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf*llvmvfkv
kmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvphgv*kvtf*c
q


Frame C:
---rrklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*ywcnh*rlc*h
ycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcfscwlwcsr*
r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylmgykrlhfnv
k


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/ 1066 0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/ 1066 0.0
SFL242 (SFL242Q) /CSM/SF/SFL2-B/SFL242Q.Seq.d/ 1066 0.0
SFK574 (SFK574Q) /CSM/SF/SFK5-D/SFK574Q.Seq.d/ 1066 0.0
SFJ429 (SFJ429Q) /CSM/SF/SFJ4-B/SFJ429Q.Seq.d/ 1066 0.0
SFI602 (SFI602Q) /CSM/SF/SFI6-A/SFI602Q.Seq.d/ 1066 0.0
SFG645 (SFG645Q) /CSM/SF/SFG6-B/SFG645Q.Seq.d/ 1066 0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/ 1066 0.0
CHA719 (CHA719Q) /CSM/CH/CHA7-A/CHA719Q.Seq.d/ 1066 0.0
AHH295 (AHH295Q) /CSM/AH/AHH2-D/AHH295Q.Seq.d/ 1066 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina... 1066 0.0 1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462. 1066 0.0 1
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524. 1066 0.0 1
(BJ403007) Dictyostelium discoideum cDNA clone:dds18c02, 3' ... 1066 0.0 1
(BJ401777) Dictyostelium discoideum cDNA clone:dds19j08, 3' ... 1066 0.0 1
(BJ401444) Dictyostelium discoideum cDNA clone:dds23c12, 3' ... 1066 0.0 1
(BJ401286) Dictyostelium discoideum cDNA clone:dds22c19, 3' ... 1066 0.0 1
(BJ400695) Dictyostelium discoideum cDNA clone:dds14i12, 3' ... 1066 0.0 1
(BJ399605) Dictyostelium discoideum cDNA clone:dds6n16, 3' e... 1066 0.0 1
(BJ377273) Dictyostelium discoideum cDNA clone:ddc23f05, 3' ... 1066 0.0 1
dna update 2009. 4.12
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 356 2e-97
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 189 4e-47
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 189 4e-47
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c... 172 4e-42
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs... 171 1e-41
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li... 168 9e-41
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ... 166 3e-40
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,... 166 3e-40
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot... 164 1e-39
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae... 164 2e-39
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM572 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM572Z
3' end seq.
>AFM572Z.Seq
XXXXXXXXXXTCCAGAAGAAAACTTTGGTTGTGATGGTGGTTTAATGAATAATGCATTTG
ATTATATCATTAAAAACAAGGGTATTGACACTGAAAGTAGTTATCCATATACTGCTGAAA
CTGGTTCAACATGTTTATTCAATAAATCTGATATTGGTGCAACCATTAAAGGTTATGTTA
ACATTACTGCCGGTTCAGAGATTTCATTAGAGAATGGTGCTCAACATGGTCCAGTATCTG
TTGCAATTGATGCTTCCCATAATAGTTTCCAACTCTATACATCTGGTATCTATTATGAGC
CAAAATGTTCTCCAACTGAATTGGATCATGGTGTTTTAGTTGTTGGTTATGGTGTTCAAG
GTAAAGATGATGAAGGTCCAGTATTAAACAGAAAACAAACCATTGTTATCCACAAGAATG
AAGATAATAAAGTTGAATCCTCTGATGATTCATCTGATAGTGTTAGACCAAAGGCAAATA
ATTATTGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAA
TGTCAAAG
Length of 3' end seq. 548
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -