VFH105
Library VF
(Link to library)
Clone ID VFH105
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15516-1
Original site URL
Representative seq. ID VFH105P
(Link to Original site)
Representative DNA sequence
>VFH105 (VFH105Q) /CSM/VF/VFH1-A/VFH105Q.Seq.d/
AAAAAAACGATAACTAACATATAAATAAAGGTAGCATTAAATTAGGCTATAACTGGATTA
TATATTTATAAAATGTTAGTATTATTTGAAACATCAGCAGGTTTTGCCTTATTCAAGGTT
TTGGATGAAGGTAAAATGAAATCAAAACCAGTTGACATCAATAACTTTTTCGAAACCCCA
GAAAAAGCTTCCTCATTTGTTTCATTAAAGAAATTTTATAAATTTGATGGTACATTAGAT
GCATTAGAAGCACAAACTGCAATTGCAGAATGTAAAGTTCCAGAATCATTATCAAACTTT
TTAAAAAAGAATGTTGTTAGTGAGAAATTAAATGAACAATTAATTGTTAGTGATAGTAAA
TTTGGTAATGCAATCAAGGACGCATTAAATATCAAAGTTTTATGTGATGATACTACTCAA
GAGTTGATTAGAGGXXXXXXXXXXAAGNNGATAGNAAAGANGTAAAGNANGNNAAGNAAG
ATAAGNAAGTTAAAGNCTGAAGNANCTCCAGTCGCCAAAGAAGATAAAGAAAGAAAAGAA
AGNAAAGAAAGAAGAGAAAGAAGTNAAAGNNAGATAAAAAAGTTAAAGAAAGAAAAGAAA
GATAAAAAAGAAAAGAAAGAAGAAAAAGAAGATAAAAAAGAAGAAAAGAAAGAAAAGAAA
GATAAGAAAGAAAAGACTGAAGAAACTGCCAGTCGCCAAAGAAGAAAAGAAAGAAAAGAA
AGAAAAGAAAGAAGAGAAAGAAGAAAAGAAAGCTAAAAAAGAAAAGAAAGAAAAGAAAGA
AGAAAAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
kktitni*ikvaln*AITGLYIYKMLVLFETSAGFALFKVLDEGKMKSKPVDINNFFETP
EKASSFVSLKKFYKFDGTLDALEAQTAIAECKVPESLSNFLKKNVVSEKLNEQLIVSDSK
FGNAIKDALNIKVLCDDTTQELIR---

---XDXKXVKXXKXDKXVKX*xxssrqrr*rkkrkxrkkrkkxkxdkkvkerker*krke
rrkrr*krrkerker*erkd*rncqspkkkrkkrkkrkkrkkkrklkkkrkkrkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
kktitni*ikvaln*AITGLYIYKMLVLFETSAGFALFKVLDEGKMKSKPVDINNFFETP
EKASSFVSLKKFYKFDGTLDALEAQTAIAECKVPESLSNFLKKNVVSEKLNEQLIVSDSK
FGNAIKDALNIKVLCDDTTQELIR---

---kxixkx*xxxxkixklkxexxpvakedkerkexkerrersxxxikklkkekkdkkek
keekedkkeekkekkdkkekteetasrqrrkerkerkerrerrkes*krkerkerrk

Frame B:
kkr*ltyk*r*h*irl*ldyifikc*yylkhqqvlpysrfwmkvk*nqnqltsitfskpq
kklphlfh*rnfinlmvh*mh*khklqlqnvkfqnhyqtf*krmllvrn*mnn*llvivn
lvmqsrth*iskfyvmillks*le---

---xx*xrxkxxxxr*xs*xlkxlqspkkikkekkxkkeekevkxr*ks*rkkrkikkkr
kkkkkikkkkrkkrkirkkrlkklpvakeekkekkekkeekeekkakkekkekkeek

Frame C:
kndn*hinkgsiklgynwiiyl*nvsii*nisrfcliqgfg*r*neikts*hq*lfrnpr
ksflicfikeil*i*wyircirstncncrm*ssriiiklfkkecc**eik*tinc****i
w*cnqgrikyqsfm**yysrvd*r---

---XDXKXVKXXKXDKXVKX*xxssrqrr*rkkrkxrkkrkkxkxdkkvkerker*krke
rrkrr*krrkerker*erkd*rncqspkkkrkkrkkrkkrkkkrklkkkrkkrkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFH105 (VFH105Q) /CSM/VF/VFH1-A/VFH105Q.Seq.d/ 872 0.0
VHJ237 (VHJ237Q) /CSM/VH/VHJ2-B/VHJ237Q.Seq.d/ 846 0.0
VFC303 (VFC303Q) /CSM/VF/VFC3-A/VFC303Q.Seq.d/ 846 0.0
VFA259 (VFA259Q) /CSM/VF/VFA2-C/VFA259Q.Seq.d/ 846 0.0
SFE274 (SFE274Q) /CSM/SF/SFE2-D/SFE274Q.Seq.d/ 846 0.0
AFC277 (AFC277Q) /CSM/AF/AFC2-D/AFC277Q.Seq.d/ 846 0.0
AFA368 (AFA368Q) /CSM/AF/AFA3-C/AFA368Q.Seq.d/ 846 0.0
CFF804 (CFF804Q) /CSM/CF/CFF8-A/CFF804Q.Seq.d/ 844 0.0
AFD369 (AFD369Q) /CSM/AF/AFD3-C/AFD369Q.Seq.d/ 839 0.0
AFC662 (AFC662Q) /CSM/AF/AFC6-C/AFC662Q.Seq.d/ 839 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BE342309|BE342309.1 EST395153 potato stolon, Cornell University Solanum tuberosum cDNAclone cSTA19F21, mRNA sequence. 56 8e-04 1
BG597726|BG597726.1 EST496404 cSTS Solanum tuberosum cDNA clone cSTS18D12 5' sequence, mRNA sequence. 56 8e-04 1
BG598110|BG598110.1 EST496788 cSTS Solanum tuberosum cDNA clone cSTS20C11 5' sequence, mRNA sequence. 56 8e-04 1
AW906350|AW906350.1 EST342472 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA3C3, mRNA sequence. 56 8e-04 1
BE342617|BE342617.1 EST395461 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA20L9, mRNA sequence. 56 8e-04 1
AW907097|AW907097.1 EST343129 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA5C8, mRNA sequence. 56 8e-04 1
AW906668|AW906668.1 EST342790 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA4C11 similar to Oryza sativa SAR DNA binding protein, mRNA sequence. 56 8e-04 1
BF187729|BF187729.1 EST444016 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA42I13 5' sequence, mRNA sequence. 56 8e-04 1
AB059832|AB059832.1 Nicotiana tabacum MARBPF mRNA for MAR-binding protein, complete cds. 56 8e-04 1
BE923249|BE923249.1 EST427018 potato leaves and petioles Solanum tuberosum cDNA clone cSTB24E12 5' sequence, mRNA sequence. 56 8e-04 1
dna update 2004. 2.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55FI4) RecName: Full=Nucleolar protein 58; AltName: Full=Nucle... 236 5e-61
BC151884_1(BC151884|pid:none) Danio rerio NOP58 ribonucleoprotei... 103 5e-21
BC155194_1(BC155194|pid:none) Danio rerio NOP58 ribonucleoprotei... 103 5e-21
BC061961_1(BC061961|pid:none) Danio rerio NOP58 ribonucleoprotei... 103 5e-21
BC044394_1(BC044394|pid:none) Danio rerio NOP58 ribonucleoprotei... 103 5e-21
BC077204_1(BC077204|pid:none) Xenopus laevis MGC78950 protein, m... 103 6e-21
BC122512_1(BC122512|pid:none) Xenopus laevis MGC78950 protein, m... 103 6e-21
CR762270_1(CR762270|pid:none) Xenopus tropicalis finished cDNA, ... 102 1e-20
BC064169_1(BC064169|pid:none) Xenopus tropicalis nucleolar prote... 102 1e-20
BC044082_1(BC044082|pid:none) Xenopus laevis similar to nucleola... 102 2e-20
protein update 2009. 6.20
PSORT

psg: 0.85 gvh: 0.49 alm: 0.34 top: 0.47 tms: 0.00 mit: 0.14 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for VFH105 is cyt

5' end seq. ID VFH105F
5' end seq.
>VFH105F.Seq
AAAAAAACGATAACTAACATATAAATAAAGGTAGCATTAAATTAGGCTATAACTGGATTA
TATATTTATAAAATGTTAGTATTATTTGAAACATCAGCAGGTTTTGCCTTATTCAAGGTT
TTGGATGAAGGTAAAATGAAATCAAAACCAGTTGACATCAATAACTTTTTCGAAACCCCA
GAAAAAGCTTCCTCATTTGTTTCATTAAAGAAATTTTATAAATTTGATGGTACATTAGAT
GCATTAGAAGCACAAACTGCAATTGCAGAATGTAAAGTTCCAGAATCATTATCAAACTTT
TTAAAAAAGAATGTTGTTAGTGAGAAATTAAATGAACAATTAATTGTTAGTGATAGTAAA
TTTGGTAATGCAATCAAGGACGCATTAAATATCAAAGTTTTATGTGATGATACTACTCAA
GAGTTGATTAGAGG----------
Length of 5' end seq. 434
3' end seq. ID VFH105Z
3' end seq.
>VFH105Z.Seq
----------AAGNNGATAGNAAAGANGTAAAGNANGNNAAGNAAGATAAGNAAGTTAAA
GNCTGAAGNANCTCCAGTCGCCAAAGAAGATAAAGAAAGAAAAGAAAGNAAAGAAAGAAG
AGAAAGAAGTNAAAGNNAGATAAAAAAGTTAAAGAAAGAAAAGAAAGATAAAAAAGAAAA
GAAAGAAGAAAAAGAAGATAAAAAAGAAGAAAAGAAAGAAAAGAAAGATAAGAAAGAAAA
GACTGAAGAAACTGCCAGTCGCCAAAGAAGAAAAGAAAGAAAAGAAAGAAAAGAAAGAAG
AGAAAGAAGAAAAGAAAGCTAAAAAAGAAAAGAAAGAAAAGAAAGAAGAAAAAG
Length of 3' end seq. 344
Connected seq. ID VFH105P
Connected seq.
>VFH105P.Seq
AAAAAAACGATAACTAACATATAAATAAAGGTAGCATTAAATTAGGCTATAACTGGATTA
TATATTTATAAAATGTTAGTATTATTTGAAACATCAGCAGGTTTTGCCTTATTCAAGGTT
TTGGATGAAGGTAAAATGAAATCAAAACCAGTTGACATCAATAACTTTTTCGAAACCCCA
GAAAAAGCTTCCTCATTTGTTTCATTAAAGAAATTTTATAAATTTGATGGTACATTAGAT
GCATTAGAAGCACAAACTGCAATTGCAGAATGTAAAGTTCCAGAATCATTATCAAACTTT
TTAAAAAAGAATGTTGTTAGTGAGAAATTAAATGAACAATTAATTGTTAGTGATAGTAAA
TTTGGTAATGCAATCAAGGACGCATTAAATATCAAAGTTTTATGTGATGATACTACTCAA
GAGTTGATTAGAGG----------AAGNNGATAGNAAAGANGTAAAGNANGNNAAGNAAG
ATAAGNAAGTTAAAGNCTGAAGNANCTCCAGTCGCCAAAGAAGATAAAGAAAGAAAAGAA
AGNAAAGAAAGAAGAGAAAGAAGTNAAAGNNAGATAAAAAAGTTAAAGAAAGAAAAGAAA
GATAAAAAAGAAAAGAAAGAAGAAAAAGAAGATAAAAAAGAAGAAAAGAAAGAAAAGAAA
GATAAGAAAGAAAAGACTGAAGAAACTGCCAGTCGCCAAAGAAGAAAAGAAAGAAAAGAA
AGAAAAGAAAGAAGAGAAAGAAGAAAAGAAAGCTAAAAAAGAAAAGAAAGAAAAGAAAGA
AGAAAAAG
Length of connected seq. 778
Full length Seq ID -
Full length Seq. -
Length of full length seq. -