VFG895 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFG895
Library	VF (Link to library)
Clone ID	VFG895 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16182-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFG8-D/VFG895Q.Seq.d/
Representative seq. ID	VFG895E (Link to Original site)
Representative DNA sequence	>VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/ CCAACCTTAATAAAAAAATAAACTCATGTACATATAAAAATTAAAATAAAAGAAAAAAAA ATGAAAAGGACGATAATAATATTATTATTTGTATCATTATTTGTAACATTTGTTTTATCA CAAATACCAGATAATGATCCAGAATTATGTCAACAAAGAATTCAAAGAGAGGATTGTCCA CAAACACCAGTACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACTATATG CAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGATATCAT TCAGCAATTGGTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATGATGCT TTCTTTGAAGTAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAGATGAA CTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTAATGAAACTTATTGG GATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAATTAATGGNACTCAA TTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCNGGNATACCNAAC ATGGGACGTNTGGAACAATTATGGTCAANATTTGTTTGTTCCATCAACAACATGTGATGA TTTCNCTCAACAATCNATCGAACATTTAGGTAGNATTGGTATTAATTANAATTGNTCAAC AGTTTTCAAAANAGATTACATTAATNTTTTCNCTGAAAAACCCCAACCNATCGATTTCCC AGAACNTTATGATGATATCTTTAAATTCTATGAAGCTGNATTAGAAATTAAANAAGGCNC NATTGCNCNAATCNTTGAAAGAATTTTATCNANCANTGGTTTAAAGAAATATATTTACGN TCAAGGTGAATATTATTTATTANAATTNAATTATCCNTTTATGAATGCNAAATATGATTA TATCCCNTTACCNGGTTGNCCAGCNAATGGNATCGATTATGAAAATGGCNATTTTATTCN TCNCNATTAGATTATTTTAAAATTAGATTATTTTNAATTNAATNGGTTATAAANAAAAAC NAAAAACNAAAATAATAAAAAAAAAATTCCTTTTTTTTTTAAT
sequence update	2001. 6. 9
Translated Amino Acid sequence	ptlikkTHVHIKIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCP QTPVPWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDA FFEVGNGTLPNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGTQ LNQYIEWMQQYNISNPGIPNMGRXEQLWSXFVCSINNMfxstixrtfrxwylxlxn sfqxrlhxfxktptxrfprtlylilsxirnxrxxcxnxknfixxwfkeiylr srilfixixlsxyecxilypxtxlxsxwxrlkwxfyssxldyfkirlfxixxvixkn xkxk*kknsfff
Translated Amino Acid sequence (All Frames)	Frame A: ptlikkTHVHIKIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCP QTPVPWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDA FFEVGNGTLPNIINVDGKDELLWCNAGILCTVPYINETYWDKNIYSTASKTYMGTINGTQ LNQYIEWMQQYNISNPGIPNMGRXEQLWSXFVCSINNMfxstixrtfrxwylxlxn sfqxrlhxfxktptxrfprtlylilsxirnxrxxcxnxknfixxwfkeiylr srilfixixlsxyecxilypxtxlxsxwxrlkwxfyssxldyfkirlfxixxvixkn xkxk*kknsfff Frame B: qp*knklmyiklkkkkkkgr*yyylyhylhlfyhkyqimiqnyvnkefkerivh khqyhgehsmtmtkskstickhqfskqfleislvswvdiiqqlvsmtlqlviiqqnmml slkemvhyqismsmvkmnfygvmlvsfvlfhtlmkligiktsiqllqkliweqlmxln inisngcnniifqixxyxtwdvwnnygqxlfvpsttcddfxqqsiehlgxiginxnxst vfkxdyinxfxekpqpidfpexyddifkfyeaxleikxgxiaxixerilsxxglkkyiyx qgeyyllxxnypfmnakydyiplpgxpangidyengxfixxxiilkldyfxxnxlxkt knxnnkkkipfffn Frame C: nlnkkinsctyknnkrkknekddnniiiciiicnicfitntrsrimstknskrglst ntstmgniqqrnrsllyastsfrssfwkflwvgwisfsnwflpynwfklysricf lsrkwyitkyhkcrwrtfmvcwyplycsih*nllgkhlfncfknlygnnwxsi ksiyrmdatiyfksxxtxhgtxgtimvxiclfhqqhvmislnnxsnivxlvlixixqq fskxitlxfslknpnxsisqnxmmislnsmklxklxkaxlxxslkefyxxxvrniftx kvniiyxnxiixlmxnmiisxyxvxqxmxsimkmailfxxirlfniixnxxgykxkx ktkiikkkflffl
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFG895 (VFG895Q) /CSM/VF/VFG8-D/VFG895Q.Seq.d/ 1733 0.0 VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/ 1447 0.0 SSG340 (SSG340Q) /CSM/SS/SSG3-B/SSG340Q.Seq.d/ 1160 0.0 SLE504 (SLE504Q) /CSM/SL/SLE5-A/SLE504Q.Seq.d/ 1130 0.0 VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/ 1037 0.0 VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/ 1025 0.0 FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/ 1019 0.0 FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/ 1019 0.0 SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/ 993 0.0 VFC480 (VFC480Q) /CSM/VF/VFC4-D/VFC480Q.Seq.d/ 985 0.0
own update	2002.12.17
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 1025 0.0 8 AL034557\|AL034557.8 Plasmodium falciparum MAL4P1. 52 6e-06 13 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 44 2e-04 11 AE014827\|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence. 36 6e-04 13 AL049180\|AL049180.3 Plasmodium falciparum DNA * SEQUENCING IN PROGRESS * from MAL13P1. 36 0.002 10 AC116957\|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 0.003 17 AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 42 0.003 17 AX392735\|AX392735.1 Sequence 25 from Patent WO0212526. 30 0.009 11 AL844507\|AL844507.1 Plasmodium falciparum chromosome 8. 36 0.009 19 AC005308\|AC005308.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS *, 1 ordered pieces. 36 0.018 12
dna update	2004. 2.19
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ... 340 e-159 AC116305_28(AC116305\|pid:none) Dictyostelium discoideum chromoso... 342 1e-92 AK032293_1(AK032293\|pid:none) Mus musculus adult male olfactory ... 91 1e-16 AF068227_1(AF068227\|pid:none) Homo sapiens putative transmembran... 91 1e-16 BC025487_1(BC025487\|pid:none) Mus musculus ceroid-lipofuscinosis... 91 1e-16 AK075109_1(AK075109\|pid:none) Homo sapiens cDNA FLJ90628 fis, cl... 89 4e-16 AY885123_1(AY885123\|pid:none) Canis familiaris CLN5 (CLN5) gene,... 87 1e-15 (Q5JZQ9) Ceroid-lipofuscinosis neuronal protein 5 precursor (Pro... 87 1e-15 (Q86JG6) RecName: Full=Cln5-like protein 1; Flags: Precursor; &... 67 1e-15 (Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;... 86 2e-15
protein update	2009. 3. 8
PSORT	psg: 0.47 gvh: 0.86 alm: 0.17 top: -0.13 tms: 0.07 mit: 0.25 mip: 0.04 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 24.0 %: cytoplasmic 20.0 %: nuclear 16.0 %: mitochondrial 16.0 %: Golgi 8.0 %: vacuolar 8.0 %: endoplasmic reticulum 4.0 %: extracellular, including cell wall 4.0 %: peroxisomal >> prediction for VFG895 is cyt
5' end seq. ID	VFG895F
5' end seq.	>VFG895F.Seq CCAACCTTAATAAAAAAATAAACTCATGTACATATAAAAATTAAAATAAAAGAAAAAAAA ATGAAAAGGACGATAATAATATTATTATTTGTATCATTATTTGTAACATTTGTTTTATCA CAAATACCAGATAATGATCCAGAATTATGTCAACAAAGAATTCAAAGAGAGGATTGTCCA CAAACACCAGTACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACTATATG CAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGATATCAT TCAGCAATTGGTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATGATGCT TTCTTTGAAGTAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAGATGAA CTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTAATGAAACTTATTGG GATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAATTAATGGTACTCAA TTAAATCAATATATCGAATGGATGCAACAATATAATATTTC----------
Length of 5' end seq.	581
3' end seq. ID	VFG895Z
3' end seq.	>VFG895Z.Seq ----------TGGGAACAATTAATGGGACTCAATTAAATCAATATATCGAATGGATGCNA CAATATAATNTTTCAAATCCNGGNATACCNAACATGGGACGTNTGGAACAATTATGGTCA ANATTTGTTTGTTCCATCAACAACATGTGATGATTTCNCTCAACAATCNATCGAACATTT AGGTAGNATTGGTATTAATTANAATTGNTCAACAGTTTTCAAAANAGATTACATTAATNT TTTCNCTGAAAAACCCCAACCNATCGATTTCCCAGAACNTTATGATGATATCTTTAAATT CTATGAAGCTGNATTAGAAATTAAANAAGGCNCNATTGCNCNAATCNTTGAAAGAATTTT ATCNANCANTGGTTTAAAGAAATATATTTACGNTCAAGGTGAATATTATTTATTANAATT NAATTATCCNTTTATGAATGCNAAATATGATTATATCCCNTTACCNGGTTGNCCAGCNAA TGGNATCGATTATGAAAATGGCNATTTTATTCNTCNCNATTAGATTATTTTAAAATTAGA TTATTTTNAATTNAATNGGTTATAAANAAAAACNAAAAACNAAAATAATAAAAAAAAAAT TCCTTTTTTTTTTAAT
Length of 3' end seq.	606
Connected seq. ID	VFG895P
Connected seq.	>VFG895P.Seq CCAACCTTAATAAAAAAATAAACTCATGTACATATAAAAATTAAAATAAAAGAAAAAAAA ATGAAAAGGACGATAATAATATTATTATTTGTATCATTATTTGTAACATTTGTTTTATCA CAAATACCAGATAATGATCCAGAATTATGTCAACAAAGAATTCAAAGAGAGGATTGTCCA CAAACACCAGTACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACTATATG CAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGATATCAT TCAGCAATTGGTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATGATGCT TTCTTTGAAGTAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAGATGAA CTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTAATGAAACTTATTGG GATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAATTAATGGTACTCAA TTAAATCAATATATCGAATGGATGCAACAATATAATATTTC----------TGGGAACAA TTAATGGGACTCAATTAAATCAATATATCGAATGGATGCNACAATATAATNTTTCAAATC CNGGNATACCNAACATGGGACGTNTGGAACAATTATGGTCAANATTTGTTTGTTCCATCA ACAACATGTGATGATTTCNCTCAACAATCNATCGAACATTTAGGTAGNATTGGTATTAAT TANAATTGNTCAACAGTTTTCAAAANAGATTACATTAATNTTTTCNCTGAAAAACCCCAA CCNATCGATTTCCCAGAACNTTATGATGATATCTTTAAATTCTATGAAGCTGNATTAGAA ATTAAANAAGGCNCNATTGCNCNAATCNTTGAAAGAATTTTATCNANCANTGGTTTAAAG AAATATATTTACGNTCAAGGTGAATATTATTTATTANAATTNAATTATCCNTTTATGAAT GCNAAATATGATTATATCCCNTTACCNGGTTGNCCAGCNAATGGNATCGATTATGAAAAT GGCNATTTTATTCNTCNCNATTAGATTATTTTAAAATTAGATTATTTTNAATTNAATNGG TTATAAANAAAAACNAAAAACNAAAATAATAAAAAAAAAATTCCTTTTTTTTTTAAT
Length of connected seq.	1187
Full length Seq ID	VFG895E
Full length Seq.	>VFG895E.Seq CCAACCTTAATAAAAAAATAAACTCATGTACATATAAAAATTAAAATAAAAGAAAAAAAA ATGAAAAGGACGATAATAATATTATTATTTGTATCATTATTTGTAACATTTGTTTTATCA CAAATACCAGATAATGATCCAGAATTATGTCAACAAAGAATTCAAAGAGAGGATTGTCCA CAAACACCAGTACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACTATATG CAAGCACCAGTTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGATATCAT TCAGCAATTGGTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATGATGCT TTCTTTGAAGTAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAGATGAA CTTTTATGGTGTAATGCTGGTATCCTTTGTACTGTTCCATACATTAATGAAACTTATTGG GATAAAAACATCTATTCAACTGCTTCAAAAACTTATATGGGAACAATTAATGGNACTCAA TTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCNGGNATACCNAAC ATGGGACGTNTGGAACAATTATGGTCAANATTTGTTTGTTCCATCAACAACATGTGATGA TTTCNCTCAACAATCNATCGAACATTTAGGTAGNATTGGTATTAATTANAATTGNTCAAC AGTTTTCAAAANAGATTACATTAATNTTTTCNCTGAAAAACCCCAACCNATCGATTTCCC AGAACNTTATGATGATATCTTTAAATTCTATGAAGCTGNATTAGAAATTAAANAAGGCNC NATTGCNCNAATCNTTGAAAGAATTTTATCNANCANTGGTTTAAAGAAATATATTTACGN TCAAGGTGAATATTATTTATTANAATTNAATTATCCNTTTATGAATGCNAAATATGATTA TATCCCNTTACCNGGTTGNCCAGCNAATGGNATCGATTATGAAAATGGCNATTTTATTCN TCNCNATTAGATTATTTTAAAATTAGATTATTTTNAATTNAATNGGTTATAAANAAAAAC NAAAAACNAAAATAATAAAAAAAAAATTCCTTTTTTTTTTAAT
Length of full length seq.	1123

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas