>VFG884 (VFG884Q) /CSM/VF/VFG8-D/VFG884Q.Seq.d/
AATTGTCACCTGACTTACATAAAAGAAAATGAAATTACTTATTTTAACTTTATTTTTAGC
TACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGA
ATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTAC
CACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTAC
CCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATC
AAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGC
CTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTAT
GTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATT
ATTCGCTGAAGCCXXXXXXXXXX

ivt*lt*KKMKLLILTLFLATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLSALNAGT
TIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGA
SSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAE---

Frame A:
nchltyikeneityfnfifsyycfsssfnstiklpssfkri*kksstkmvkqiicsqcwy
hnpnfrf*rcsilwchyhwyprsslqssfrywfiqlvdsikemsnhcccm*ft*qi*qrc
lkhicrqrn*fhhpir*wcyvrfclsrfrhcwfinc*rsiir*s---


Frame B:
ivt*lt*KKMKLLILTLFLATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLSALNAGT
TIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGA
SSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAE---


Frame C:
lspdlhkrk*nylf*lyf*lllf*lkl*qyh*tsiklqenleeefhkngqtdyllsmlvp
qsqfqilkmlntmvplplvpqvkpsk*fsilvhptcgfhqrnvqslllhviyitnitavp
qahmsptelispsntvvvlcqvlslkipsllvh*llkinyslk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO736 (VFO736Q) /CSM/VF/VFO7-B/VFO736Q.Seq.d/                        977   0.0
VFO719 (VFO719Q) /CSM/VF/VFO7-A/VFO719Q.Seq.d/                        977   0.0
VFO689 (VFO689Q) /CSM/VF/VFO6-D/VFO689Q.Seq.d/                        977   0.0
VFO526 (VFO526Q) /CSM/VF/VFO5-B/VFO526Q.Seq.d/                        977   0.0
VFO331 (VFO331Q) /CSM/VF/VFO3-B/VFO331Q.Seq.d/                        977   0.0
VFN875 (VFN875Q) /CSM/VF/VFN8-D/VFN875Q.Seq.d/                        977   0.0
VFN873 (VFN873Q) /CSM/VF/VFN8-D/VFN873Q.Seq.d/                        977   0.0
VFN780 (VFN780Q) /CSM/VF/VFN7-D/VFN780Q.Seq.d/                        977   0.0
VFN696 (VFN696Q) /CSM/VF/VFN6-D/VFN696Q.Seq.d/                        977   0.0
VFN650 (VFN650Q) /CSM/VF/VFN6-C/VFN650Q.Seq.d/                        977   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D.    963   0.0    1
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2.   805   0.0    2
CB814835|CB814835.1 USDA-FP_100247 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-04_A10 5', mRNA sequence.    36   7e-06  3
AL762930|AL762930.1 Arabidopsis thaliana T-DNA flanking sequence GK-030C11-011522.    62   8e-06  1
BE525959|BE525959.1 M64C07STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone 600034526R1 5', mRNA sequence.    62   8e-06  1
CD825453|CD825453.1 BN25.060N03F011129 BN25 Brassica napus cDNA clone BN25060N03, mRNA sequence.    62   8e-06  1
BX838383|BX838383.1 Arabidopsis thaliana Full-length cDNA 5PRIM end of clone  GSLTSIL89ZD03 of Silique of strain col-0 of Arabidopsis thaliana  (thale cress).    62   8e-06  1
BX827174|BX827174.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone  GSLTLS1ZB10 of Adult vegetative tissue of strain col-0 of  Arabidopsis thaliana (thale cress).    62   8e-06  1
AF076243|AF076243.1 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence.    62   8e-06  1
BX829292|BX829292.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone  GSLTSIL89ZE03 of Silique of strain col-0 of Arabidopsis thaliana  (thale cress).    62   8e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c...   152   4e-36
AF454831_1(AF454831|pid:none) Apriona germari cathepsin D mRNA, ...   152   4e-36
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ...   152   6e-36
EF213114_1(EF213114|pid:none) Penaeus monodon cathepsin D mRNA, ...   150   1e-35
FJ654712_1(FJ654712|pid:none) Chrysomela tremulae aspartic prote...   150   2e-35
EF070454_1(EF070454|pid:none) Maconellicoccus hirsutus clone WHM...   148   8e-35
CP001577_36(CP001577|pid:none) Micromonas sp. RCC299 chromosome ...   145   4e-34
EF193385_1(EF193385|pid:none) Musca domestica aspartic proteinas...   144   9e-34
(Q03168) RecName: Full=Lysosomal aspartic protease;          EC=...   144   1e-33
(O93428) RecName: Full=Cathepsin D;          EC=3.4.23.5; Flags:...   142   3e-33

 psg: 0.98  gvh: 0.77  alm: 0.47  top: 0.57  tms: 0.00  mit: 0.36  mip: 0.08
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 20.0 %: mitochondrial
	 12.0 %: cytoplasmic
	  8.0 %: vacuolar
	  4.0 %: Golgi
	  4.0 %: nuclear
	  4.0 %: endoplasmic reticulum

>> prediction for VFG884 is exc

>VFG884F.Seq
AATTGTCACCTGACTTACATAAAAGAAAATGAAATTACTTATTTTAACTTTATTTTTAGC
TACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGA
ATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTAC
CACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTAC
CCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATC
AAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGC
CTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTAT
GTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATT
ATTCGCTGAAGCC----------