>VFG846 (VFG846Q) /CSM/VF/VFG8-B/VFG846Q.Seq.d/
XXXXXXXXXXTCAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAANACTATCA
ATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAG
GTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTNACCTTAAGAAAGAGTATCNCCACTCAAA
CTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCANCGNTACCTCCAGCAAGTTTG
GTCACGGTCNTCATCA

---QISTGKTEFDLTEXTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRAXTLRKSIXTQT
GRAALEKITLKFXXTSSKFGHGXH

Frame A:
---QISTGKTEFDLTEXTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRAXTLRKSIXTQT
GRAALEKITLKFXXTSSKFGHGXH


Frame B:
---ksqpvrlnsi*lkxlsiqwvvslttvwlnmns*clkvvllvqerepxp*ervsplkl
vvlpsrkslsnsxxppaslvtvxi


Frame C:
---nlnr*d*irfn*kxyqsngwfrslryg*t*ilna*rlccwskkeslxlkkeyxhsnw
sccprenhsqixrylqqvwsrsss

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG846 (VFG846Q) /CSM/VF/VFG8-B/VFG846Q.Seq.d/                        452   e-126
VSI163 (VSI163Q) /CSM/VS/VSI1-C/VSI163Q.Seq.d/                        450   e-126
VHA485 (VHA485Q) /CSM/VH/VHA4-D/VHA485Q.Seq.d/                        450   e-126
VFO878 (VFO878Q) /CSM/VF/VFO8-D/VFO878Q.Seq.d/                        450   e-126
VFO869 (VFO869Q) /CSM/VF/VFO8-C/VFO869Q.Seq.d/                        450   e-126
VFO786 (VFO786Q) /CSM/VF/VFO7-D/VFO786Q.Seq.d/                        450   e-126
VFO722 (VFO722Q) /CSM/VF/VFO7-A/VFO722Q.Seq.d/                        450   e-126
VFO585 (VFO585Q) /CSM/VF/VFO5-D/VFO585Q.Seq.d/                        450   e-126
VFO454 (VFO454Q) /CSM/VF/VFO4-C/VFO454Q.Seq.d/                        450   e-126
VFO366 (VFO366Q) /CSM/VF/VFO3-C/VFO366Q.Seq.d/                        450   e-126

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.   244   e-117  2
CF207326|CF207326.1 CAB20001_IIa_Ra_E08 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20001_IIa_Ra_E08 3', mRNA sequence.    50   0.015  1
CB980647|CB980647.1 CAB70003_IIIaF_A07 Cabernet Sauvignon Berry Post-Veraison - CAB7 Vitis vinifera cDNA clone CAB70003_IIIaF_A07 5', mRNA sequence.    50   0.015  1
CB008280|CB008280.1 VVC055G10_148020 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055G10 5, mRNA sequence.    50   0.015  1
BQ798071|BQ798071.1 EST 7009 Ripening Grape berries Lambda Zap II Library Vitis vinifera cDNA clone RT094C10 3', mRNA sequence.    50   0.015  1
BQ796440|BQ796440.1 EST 5378 Ripening Grape berries Lambda Zap II Library Vitis vinifera cDNA clone RT041C07 3', mRNA sequence.    50   0.015  1
BQ794649|BQ794649.1 EST 3587 Veraison Grape berries Lambda Zap II Library Vitis vinifera cDNA clone TT282A05 3', mRNA sequence.    50   0.015  1
CF608073|CF608073.1 GEMMA01_001608 Grape Bud pSPORT1 Library Vitis vinifera cDNA 5', mRNA sequence.    50   0.015  1
CD802153|CD802153.1 EST 10028 Ripe Grape Berry Skins Lambda Triplex2 Library Vitis vinifera cDNA clone B3CS00RL001F06 3', mRNA sequence.    50   0.015  1
CB976850|CB976850.1 CAB40003_IIIa_Fa_D08 Cabernet Sauvignon Berry - CAB4 Vitis vinifera cDNA clone CAB40003_IIIa_Fa_D08 5', mRNA sequence.    50   0.015  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   153   2e-36
EF070522_1(EF070522|pid:none) Maconellicoccus hirsutus clone WHM...   106   3e-22
BT070643_1(BT070643|pid:none) Picea sitchensis clone WS02742_A15...   105   6e-22
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib...   104   8e-22
AY395739_1(AY395739|pid:none) Nicotiana tabacum ribosomal protei...   104   8e-22
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr...   104   8e-22
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407....   103   1e-21
DQ675541_1(DQ675541|pid:none) Diaphorina citri clone WHDc0197 pu...   103   2e-21
AM048985_1(AM048985|pid:none) Micromalthus debilis partial mRNA ...   103   2e-21
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM...   103   2e-21

 psg: 0.75  gvh: 0.40  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for VFG846 is nuc

>VFG846Z.Seq
----------TCAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAANACTATCA
ATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAG
GTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTNACCTTAAGAAAGAGTATCNCCACTCAAA
CTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCANCGNTACCTCCAGCAAGTTTG
GTCACGGTCNTCATCA