VFG826
Library VF
(Link to library)
Clone ID VFG826
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16505-1
Original site URL
Representative seq. ID VFG826Z
(Link to Original site)
Representative DNA sequence
>VFG826 (VFG826Q) /CSM/VF/VFG8-B/VFG826Q.Seq.d/
XXXXXXXXXXTCNTTACNCNCTCCNTTGAATTNTCNAACTAAANATATGGNAAACTNTGA
ATCCNTNGAAAAAATNAAAGGNGGNGTTATGATTANCAACGTTTCAAAAGGNGCNTTAGT
TAANGCTTNTGANGCNANTGTTGGTTTAAAATCTGGNAAAANCNGNTCCCTTGGNANGGA
NGNCTATGAAAATGAAACCNATTACTTTTANCAANATCCCNATGGNTCNATCNTTAAANA
TGANAATCNCNCTTTATTAATCTCTTAACCNAATGTTATGATCCCTTCCCNTCAAGCATG
GNACACTAAANAAGCCCTTTCTTGGANGCTGNGGGACNTCNCNTCAAAATTTCGTTGATT
TTAGGNCNAATCCAATTAAAAAANCNAANTTAGTTAANAATCCNATTTCNTCCCNNCCCA
CCCNATNAANTAAAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---LXXPLNXXTKXMXNXESXEKXKGGVMIXNVSKGALVXAXXAXVGLKSGKXXSLGXXX
YENETXYFXQXPXGSIXKXXNXXLLIS*pnvmipsxqawxtkxalswxlxdxxskfr*f*
xxsn*kxxxs*xsxfxpxhpxx*kkk


Translated Amino Acid sequence (All Frames)
Frame A:
---xyxlx*ixxlxiwxtxnpxkkxkxxl*lxtfqkxx*lxlxxxxlv*nlxkxxplxxx
xmkmkpitfxxipmxxslxmxixly*slnxml*slpxkhgtlxkpflgxxgtsxqnfvdf
rxnpikkxxlvxnpissxptxxxkkk


Frame B:
---xtxsxexsn*xygkl*ixxknxrxxydxqrfkrxxs*xx*xxcwfkiwxxxxpwxgx
l*k*nxlllxxsxwxxx*x*xsxfinlltxcydpfpssmxh*xspflxaxgxxxkislil
gxiqlkxxx*lxixfxpxppxxxkkk


Frame C:
---LXXPLNXXTKXMXNXESXEKXKGGVMIXNVSKGALVXAXXAXVGLKSGKXXSLGXXX
YENETXYFXQXPXGSIXKXXNXXLLIS*pnvmipsxqawxtkxalswxlxdxxskfr*f*
xxsn*kxxxs*xsxfxpxhpxx*kkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFG826 (VFG826Q) /CSM/VF/VFG8-B/VFG826Q.Seq.d/ 462 e-129
VFG394 (VFG394Q) /CSM/VF/VFG3-D/VFG394Q.Seq.d/ 377 e-103
VFH856 (VFH856Q) /CSM/VF/VFH8-C/VFH856Q.Seq.d/ 363 1e-99
VFF779 (VFF779Q) /CSM/VF/VFF7-D/VFF779Q.Seq.d/ 353 1e-96
SFE418 (SFE418Q) /CSM/SF/SFE4-A/SFE418Q.Seq.d/ 349 2e-95
AFO359 (AFO359Q) /CSM/AF/AFO3-C/AFO359Q.Seq.d/ 349 2e-95
VFE164 (VFE164Q) /CSM/VF/VFE1-C/VFE164Q.Seq.d/ 345 3e-94
VFL542 (VFL542Q) /CSM/VF/VFL5-B/VFL542Q.Seq.d/ 341 5e-93
VFG876 (VFG876Q) /CSM/VF/VFG8-D/VFG876Q.Seq.d/ 337 8e-92
VSK319 (VSK319Q) /CSM/VS/VSK3-A/VSK319Q.Seq.d/ 333 1e-90

own update 2009. 4. 4
Homology vs DNA

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 2,158,582
Number of Sequences: 32800594
Number of extensions: 2158582
Number of successful extensions: 145149
Number of sequences better than 10.0: 0
length of query: 442
length of database: V,023,486,437
effective HSP length: 22
effective length of query: 420
effective length of database: U,301,873,369
effective search space: 15666786814980
effective search space used: 15666786814980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.








Dictyostelium discoideum cDNA Project Home



dna update 2004. 3.11
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54UF7) RecName: Full=Putative D-lactate dehydrogenase; ... 117 1e-33
CP000117_2647(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 71 1e-11
AB1814(AB1814) D-lactate dehydrogenase [imported] - Nostoc sp. (... 71 1e-11
CP001037_2271(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 70 3e-11
CP000450_1261(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 69 4e-11
CP000749_2997(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 68 9e-11
AY313608_1(AY313608|pid:none) Mastigamoeba balamuthi putative D-... 67 1e-10
CP000250_2250(CP000250|pid:none) Rhodopseudomonas palustris HaA2... 66 4e-10
AP006841_1461(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 65 9e-10
CP000885_1901(CP000885|pid:none) Clostridium phytofermentans ISD... 64 1e-09
protein update 2009. 6.20
PSORT

psg: 0.66 gvh: 0.43 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFG826 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFG826Z
3' end seq.
>VFG826Z.Seq
----------TCNTTACNCNCTCCNTTGAATTNTCNAACTAAANATATGGNAAACTNTGA
ATCCNTNGAAAAAATNAAAGGNGGNGTTATGATTANCAACGTTTCAAAAGGNGCNTTAGT
TAANGCTTNTGANGCNANTGTTGGTTTAAAATCTGGNAAAANCNGNTCCCTTGGNANGGA
NGNCTATGAAAATGAAACCNATTACTTTTANCAANATCCCNATGGNTCNATCNTTAAANA
TGANAATCNCNCTTTATTAATCTCTTAACCNAATGTTATGATCCCTTCCCNTCAAGCATG
GNACACTAAANAAGCCCTTTCTTGGANGCTGNGGGACNTCNCNTCAAAATTTCGTTGATT
TTAGGNCNAATCCAATTAAAAAANCNAANTTAGTTAANAATCCNATTTCNTCCCNNCCCA
CCCNATNAANTAAAAAAAAAAA
Length of 3' end seq. 432
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -