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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM563
Library AF
(Link to library)
Clone ID AFM563
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM563 (AFM563Q) /CSM/AF/AFM5-C/AFM563Q.Seq.d/
ATTTAAACAACTAAACAGATAAATTTAAAAAAATGGGATTCGATTTTAAATTAAAAATTT
CAAATGCATCACAATTAGTTGTGATTTCAAAAGGTAAACCATTTTTAATTGGTAAAGAAA
TGAGTAATATTGAAATTATTGAAAATGGTACAATGATTATTGATGAAAATGGTATTATTT
TTGATATTGGTACATTTAAAGAAATGGAAGAGAAATATAAAGATAAAAGTTTTGAAAAAG
TTTTAGATTGTACAGGAAAATCTGTATTACCAGGATTTGTTGATGGACATACACATCCAG
TATTTAGTGGTGATCGTGTTCATGAATTTGCAATGAAATTAGCAGGAGCAACCTATTTAG
ATGTTCATAAAGCAGGTGGTGGTATTCAATTCACTATTTCACATACTAAAAATAGTACAG
AGGATGAACTTTATCAACTTTTAATACCAAGATTGAATAGAATGTTAAAGAATGGTACAA
CATTGATTGAAGCAAAGAGTGGGTATGGATTAGAGACTGAAACCGAGATGAAAATGTTGA
AAGTGTTAGATAGAGCATCTAAACAATTTCAAGGTGTTGAAAXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence 
lnn*TDKFKKMGFDFKLKISNASQLVVISKGKPFLIGKEMSNIEIIENGTMIIDENGIIF
DIGTFKEMEEKYKDKSFEKVLDCTGKSVLPGFVDGHTHPVFSGDRVHEFAMKLAGATYLD
VHKAGGGIQFTISHTKNSTEDELYQLLIPRLNRMLKNGTTLIEAKSGYGLETETEMKMLK
VLDRASKQFQGVE---
Translated Amino Acid sequence (All Frames) 
Frame A:
i*ttkqinlkkwdsiln*kfqmhhn*l*fqkvnhf*lvkk*vilkllkmvq*llmkmvlf
lilvhlkkwkrnikikvlkkf*ivqenlyyqdllmdihiqylvvivfmnlq*n*qeqpi*
mfikqvvvfnslfhilkivqrmnfinf*yqd*iec*rmvqh*lkqrvgmd*rlkpr*kc*
kc*iehlnnfkvl---


Frame B:
fkqlnr*i*kngirf*iknfkcitiscdfkr*tifnw*rne*y*ny*kwyndy**kwyyf
*ywyi*rngrei*r*kf*ksfrlyrkicitric*wtytssi*w*scs*icneisrsnlfr
cs*srwwysihyfty*k*yrg*tlstfntkie*nvkewynid*skewvwird*nrdenve
svr*si*tisrc*---


Frame C:
lnn*TDKFKKMGFDFKLKISNASQLVVISKGKPFLIGKEMSNIEIIENGTMIIDENGIIF
DIGTFKEMEEKYKDKSFEKVLDCTGKSVLPGFVDGHTHPVFSGDRVHEFAMKLAGATYLD
VHKAGGGIQFTISHTKNSTEDELYQLLIPRLNRMLKNGTTLIEAKSGYGLETETEMKMLK
VLDRASKQFQGVE---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFD841 (SFD841Q) /CSM/SF/SFD8-B/SFD841Q.Seq.d/                       1112   0.0
AFM563 (AFM563Q) /CSM/AF/AFM5-C/AFM563Q.Seq.d/                       1112   0.0
AFM463 (AFM463Q) /CSM/AF/AFM4-C/AFM463Q.Seq.d/                       1112   0.0
AFK679 (AFK679Q) /CSM/AF/AFK6-D/AFK679Q.Seq.d/                       1090   0.0
VFB373 (VFB373Q) /CSM/VF/VFB3-D/VFB373Q.Seq.d/                        856   0.0
VFB835 (VFB835Q) /CSM/VF/VFB8-B/VFB835Q.Seq.d/                        559   e-158
CFE812 (CFE812Q) /CSM/CF/CFE8-A/CFE812Q.Seq.d/                        194   1e-48
SSC703 (SSC703Q) /CSM/SS/SSC7-A/SSC703Q.Seq.d/                         40   0.037
VHB277 (VHB277Q) /CSM/VH/VHB2-D/VHB277Q.Seq.d/                         38   0.15
SHF755 (SHF755Q) /CSM/SH/SHF7-C/SHF755Q.Seq.d/                         38   0.15
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ388171) Dictyostelium discoideum cDNA clone:dds8b12, 5' e...  1088   0.0    2
(BJ329896) Dictyostelium discoideum cDNA clone:dda26m15, 5' ...  1088   0.0    2
(BJ329619) Dictyostelium discoideum cDNA clone:dda25n16, 5' ...  1088   0.0    2
(BJ328093) Dictyostelium discoideum cDNA clone:dda22m20, 5' ...  1066   0.0    2
(BJ411284) Dictyostelium discoideum cDNA clone:ddv3b19, 5' e...   833   0.0    2
(BJ411412) Dictyostelium discoideum cDNA clone:ddv4f10, 5' e...   535   e-157  2
(BJ358548) Dictyostelium discoideum cDNA clone:ddc10h04, 5' ...   131   2e-46  3
(FK869508) EST_crog_evp_915640 crog_evp Caligus rogercressey...    62   4e-11  2
(FE236878) CAPG4103.fwd CAPG Naegleria gruberi amoeba stage ...    48   1e-06  2
(FE241817) CAPG6868.fwd CAPG Naegleria gruberi amoeba stage ...    48   1e-06  2
dna update 2009. 4.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55CY3) RecName: Full=Probable imidazolonepropionase;          ...   365   e-100
(Q68EP2) RecName: Full=Probable imidazolonepropionase;          ...   202   7e-51
(A7RX26) RecName: Full=Probable imidazolonepropionase;          ...   193   3e-48
(Q561L6) RecName: Full=Probable imidazolonepropionase;          ...   189   6e-47
BC055559_1(BC055559|pid:none) Danio rerio hypothetical protein L...   186   3e-46
(Q7SXK5) RecName: Full=Probable imidazolonepropionase;          ...   186   3e-46
(Q9DBA8) RecName: Full=Probable imidazolonepropionase;          ...   186   3e-46
AK122802_1(AK122802|pid:none) Homo sapiens cDNA FLJ16380 fis, cl...   185   7e-46
(Q96NU7) RecName: Full=Probable imidazolonepropionase;          ...   185   7e-46
BC055025_1(BC055025|pid:none) Mus musculus amidohydrolase domain...   181   1e-44
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM563 is

5' end seq. ID AFM563F
5' end seq. 
>AFM563F.Seq
ATTTAAACAACTAAACAGATAAATTTAAAAAAATGGGATTCGATTTTAAATTAAAAATTT
CAAATGCATCACAATTAGTTGTGATTTCAAAAGGTAAACCATTTTTAATTGGTAAAGAAA
TGAGTAATATTGAAATTATTGAAAATGGTACAATGATTATTGATGAAAATGGTATTATTT
TTGATATTGGTACATTTAAAGAAATGGAAGAGAAATATAAAGATAAAAGTTTTGAAAAAG
TTTTAGATTGTACAGGAAAATCTGTATTACCAGGATTTGTTGATGGACATACACATCCAG
TATTTAGTGGTGATCGTGTTCATGAATTTGCAATGAAATTAGCAGGAGCAACCTATTTAG
ATGTTCATAAAGCAGGTGGTGGTATTCAATTCACTATTTCACATACTAAAAATAGTACAG
AGGATGAACTTTATCAACTTTTAATACCAAGATTGAATAGAATGTTAAAGAATGGTACAA
CATTGATTGAAGCAAAGAGTGGGTATGGATTAGAGACTGAAACCGAGATGAAAATGTTGA
AAGTGTTAGATAGAGCATCTAAACAATTTCAAGGTGTTGAAAXXXXXXXXXX
Length of 5' end seq. 592
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -