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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFG750
Library VF
(Link to library)
Clone ID VFG750
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13829-1
Original site URL
Representative seq. ID VFG750P
(Link to Original site)
Representative DNA sequence 
>VFG750 (VFG750Q) /CSM/VF/VFG7-C/VFG750Q.Seq.d/
AATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGCAA
CTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAATT
CTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAAAA
TTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGACCA
TTTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATAT
TTTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTCA
ATGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTAC
ATTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAAC
AGAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAACTTGTTGAGAGTAG
AATTCAACATGCTCTTAAAAATATTCCAAAAGCAAGAGCTGCTTXXXXXXXXXXGAAGAT
AAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCGTGTTGTAGATTTACTT
TATAAAAAACAAACAAACTTTCTTAAATTATTTCTTGGTCCATCTCCCT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ikfihthiiyihqk*igksnlkklviakiqtklskiiikfslfknhqmilkrkqfld*qn
yl*rlvkvinyqhf*DQLDHFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQ
WCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEIQLVESR
IQHALKNIPKARAA---

---EDKLFNCSLETIGALSRVVDLLYKKQTNFLKLFLGPSP
Translated Amino Acid sequence (All Frames) 
Frame A:
n*iyphthniytpkmnwkeqleeigncqdsnkaiqdynkiltiqespddikeeailrlak
lfvkigkgdqlptllrsvrpff**nf*tkd**nr*kfy*yflnrt**fnnfn*icqreys
mv*ryk*nlfktkirn*tfyinv*skrlckcikrinniinrn*kig**tiis*nstc*e*
nstcs*kysksksc---

---EDKLFNCSLETIGALSRVVDLLYKKQTNFLKLFLGPSP

Frame B:
ikfihthiiyihqk*igksnlkklviakiqtklskiiikfslfknhqmilkrkqfld*qn
yl*rlvkvinyqhf*DQLDHFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENIQ
WCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEIQLVESR
IQHALKNIPKARAA---

---kinylivl*kllvl*vvl*iyfiknkqtflnyflvhlp

Frame C:
lnlstht*yiytknelerat*rnw*lprfkqsyprl**nshysritr*y*rgsns*iski
ickdw*r*sitntfkis*tiflikflnqrliksleillifsqpylii*ql*lnlskrifn
gvkiqiefi*dkd*klnflh*clkqkimqmh*ad*qhy*qklkdwminhy*lkfnllrve
fnmllkifqkqell---

---r*ii*lffrnywcfksccrftl*ktnkls*iiswsis
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG750 (VFG750Q) /CSM/VF/VFG7-C/VFG750Q.Seq.d/                       1304   0.0
AFG380 (AFG380Q) /CSM/AF/AFG3-D/AFG380Q.Seq.d/                       1108   0.0
VFM634 (VFM634Q) /CSM/VF/VFM6-B/VFM634Q.Seq.d/                       1106   0.0
VFK702 (VFK702Q) /CSM/VF/VFK7-A/VFK702Q.Seq.d/                       1106   0.0
VFK121 (VFK121Q) /CSM/VF/VFK1-A/VFK121Q.Seq.d/                       1106   0.0
VFF145 (VFF145Q) /CSM/VF/VFF1-B/VFF145Q.Seq.d/                       1106   0.0
VFC823 (VFC823Q) /CSM/VF/VFC8-A/VFC823Q.Seq.d/                       1106   0.0
CHC241 (CHC241Q) /CSM/CH/CHC2-B/CHC241Q.Seq.d/                       1106   0.0
AFO642 (AFO642Q) /CSM/AF/AFO6-B/AFO642Q.Seq.d/                       1106   0.0
VFK202 (VFK202Q) /CSM/VF/VFK2-A/VFK202Q.Seq.d/                       1104   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5.    34   9e-08  18
AP001119|AP001119.1 Buchnera sp. APS genomic DNA, complete sequence, segment 2/2.    38   1e-06  14
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   4e-06  25
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            38   4e-06  23
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   2e-05  22
AB063521|AB063521.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 1/2.    32   3e-05  18
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    32   7e-05  17
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    32   1e-04  14
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             38   1e-04  18
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     38   1e-04  18
dna update 2004. 3.10
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UB5) RecName: Full=26S proteasome non-ATPase regulatory subu...   227   2e-93
AY230834_1(AY230834|pid:none) Arabidopsis thaliana 26S proteasom...   107   5e-25
AF083890_1(AF083890|pid:none) Arabidopsis thaliana 19S proteosom...   107   1e-24
A86414(A86414) hypothetical protein F28N24.15 - Arabidopsis thal...   107   1e-24
AM424416_1(AM424416|pid:none) Vitis vinifera contig VV78X196128....   107   1e-24
AY230837_1(AY230837|pid:none) Arabidopsis thaliana 26S proteasom...   107   1e-24
DQ000548_1(DQ000548|pid:none) Synthetic construct clone PSF:1085...   101   2e-24
BC168749_1(BC168749|pid:none) Rattus norvegicus cDNA clone IMAGE...   101   2e-24
AK076002_1(AK076002|pid:none) Mus musculus 10 days embryo whole ...   101   2e-24
(Q8BG32) RecName: Full=26S proteasome non-ATPase regulatory subu...   101   2e-24
protein update 2009. 6.20
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VFG750 is cyt
5' end seq. ID VFG750F
5' end seq. 
>VFG750F.Seq
AATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGCAA
CTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAATT
CTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAAAA
TTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGACCA
TTTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATAT
TTTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTCA
ATGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTAC
ATTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAAC
AGAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAACTTGTTGAGAGTAG
AATTCAACATGCTCTTAAAAATATTCCAAAAGCAAGAGCTGCTT----------
Length of 5' end seq. 584
3' end seq. ID VFG750Z
3' end seq. 
>VFG750Z.Seq
----------GAAGATAAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCG
TGTTGTAGATTTACTTTATAAAAAACAAACAAACTTTCTTAAATTATTTCTTGGTCCATC
TCCCT
Length of 3' end seq. 115
Connected seq. ID VFG750P
Connected seq. 
>VFG750P.Seq
AATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAGCAA
CTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAAATT
CTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCAAAA
TTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGACCA
TTTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGATAT
TTTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATATTCA
ATGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTTTAC
ATTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATTAAC
AGAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAACTTGTTGAGAGTAG
AATTCAACATGCTCTTAAAAATATTCCAAAAGCAAGAGCTGCTT----------GAAGAT
AAATTATTTAATTGTTCTTTAGAAACTATTGGTGCTTTAAGTCGTGTTGTAGATTTACTT
TATAAAAAACAAACAAACTTTCTTAAATTATTTCTTGGTCCATCTCCCT
Length of connected seq. 699
Full length Seq ID -
Full length Seq. -
Length of full length seq. -