VFG726
Library VF
(Link to library)
Clone ID VFG726
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID VFG726P
(Link to Original site)
Representative DNA sequence
>VFG726 (VFG726Q) /CSM/VF/VFG7-B/VFG726Q.Seq.d/
AATTGTCACCTGACTTACATAAAAGAAAATGAAATTACTTATTTTAACTTTATTTTTAGC
TACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGA
ATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTAC
CACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTAC
CCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATC
AAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGC
CTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTAT
GTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATT
ATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGATGGTAT
TTTAGGTCTTGCTTTXXXXXXXXXXTCTCATTCGGTTCAATCGATAACACCAAATACACT
GGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGAATTCGTTATGGATGAC
TTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGAT
TCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTA
GGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTA
CCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTT
TTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTA
AACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTC
GATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATT
AATTTATATTTAAGATAGAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
ivt*lt*KKMKLLILTLFLATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLSALNAGT
TIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGA
SSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGI
LGLA---

---SFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSLI
AGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEF
GKTECLSGFMGIELNMGNFWILGDVFISAYYTVFDFGNKQVGFATAIQG*iflinlylr*
k


Translated Amino Acid sequence (All Frames)
Frame A:
nchltyikeneityfnfifsyycfsssfnstiklpssfkri*kksstkmvkqiicsqcwy
hnpnfrf*rcsilwchyhwyprsslqssfrywfiqlvdsikemsnhcccm*ft*qi*qrc
lkhicrqrn*fhhpir*wcyvrfclsrfrhcwfinc*rsiir*shcrtrycfrfrqirwy
frscf---

---shsvqsitpntlvtlptsh*ptkpignslwmtllsmvnqlvsvvllvtqfaiqvhhs
llvqwlillpsmkn*vlss*mvkvsslivalstpyqmlpspllvvnlf*lqkntf*klls
serlnv*vdlwvss*tweisgslvmfsslltilysilvinklvsqlpfkvkff*liyi*d
rn

Frame B:
ivt*lt*KKMKLLILTLFLATIVLAQALTVPLNFHQASRESRRRVPQKWSNRLSALNAGT
TIPISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKYNSGA
SSTYVANGTDFTIQYGSGAMSGFVSQDSVTVGSLTVKDQLFAEATAEPGIAFDFAKFDGI
LGLA---

---lirfnr*hqihw*hylrpinqrnllgiryg*lcyrwsiswflwyylsrnlrfryith
cwsng*yycpq*kircchlkw*rcll*l*ryqhltkcyhhrcws*icfnskrirfrsy*v
rkd*mfewiygyrvkhgkfldpw*cfhlcllycirfw**tswfrnchsrlnffn*fifki
e

Frame C:
lspdlhkrk*nylf*lyf*lllf*lkl*qyh*tsiklqenleeefhkngqtdyllsmlvp
qsqfqilkmlntmvplplvpqvkpsk*fsilvhptcgfhqrnvqslllhviyitnitavp
qahmsptelispsntvvvlcqvlslkipsllvh*llkinyslkplpnqvllsispnsmvf
*vll---

---SFGSIDNTKYTGDITYVPLTNETYWEFVMDDFAIDGQSAGFCGTTCHAICDSGTSLI
AGPMADITALNEKLGAVILNGEGVFSDCSVINTLPNVTITVAGREFVLTPKEYVLEVTEF
GKTECLSGFMGIELNMGNFWILGDVFISAYYTVFDFGNKQVGFATAIQG*iflinlylr*
k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFO689 (VFO689Q) /CSM/VF/VFO6-D/VFO689Q.Seq.d/ 1100 0.0
VFN780 (VFN780Q) /CSM/VF/VFN7-D/VFN780Q.Seq.d/ 1100 0.0
VFN696 (VFN696Q) /CSM/VF/VFN6-D/VFN696Q.Seq.d/ 1100 0.0
VFN650 (VFN650Q) /CSM/VF/VFN6-C/VFN650Q.Seq.d/ 1100 0.0
VFN467 (VFN467Q) /CSM/VF/VFN4-C/VFN467Q.Seq.d/ 1100 0.0
VFN222 (VFN222Q) /CSM/VF/VFN2-A/VFN222Q.Seq.d/ 1100 0.0
VFN169 (VFN169Q) /CSM/VF/VFN1-C/VFN169Q.Seq.d/ 1100 0.0
VFM829 (VFM829Q) /CSM/VF/VFM8-B/VFM829Q.Seq.d/ 1100 0.0
VFM767 (VFM767Q) /CSM/VF/VFM7-C/VFM767Q.Seq.d/ 1100 0.0
VFM571 (VFM571Q) /CSM/VF/VFM5-C/VFM571Q.Seq.d/ 1100 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

Y16962|Y16962.1 Dictyostelium discoideum mRNA for cathepsin D. 1086 0.0 2
AJ243946|AJ243946.1 Dictyostelium discoideum ctsD gene for cathepsin D, exons 1 to 2. 999 0.0 4
E33916|E33916.1 Candida boidinii strain with lowered protease activity and utilization thereof as host for producing foreign protein. 36 1e-06 5
AF076243|AF076243.1 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete sequence. 62 1e-05 3
BX827174|BX827174.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS1ZB10 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress). 62 2e-05 1
AV567523|AV567523.1 Arabidopsis thaliana cDNA clone:SQL15g03F, 3' end. 62 2e-05 1
BX829292|BX829292.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL89ZE03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress). 62 2e-05 1
CB264640|CB264640.1 48-E014661-035-002-P12-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000P122Q 5-PRIME, mRNA sequence. 62 2e-05 1
CB264579|CB264579.1 51-E015023-035-004-F13-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA clone MPIZp2000F134Q 5-PRIME, mRNA sequence. 62 2e-05 1
AF372974|AF372974.1 Arabidopsis thaliana AT4g04460/T26N6_7 mRNA, complete cds. 62 2e-05 1
dna update 2004. 3.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c... 181 2e-85
EF213114_1(EF213114|pid:none) Penaeus monodon cathepsin D mRNA, ... 179 3e-85
(Q03168) RecName: Full=Lysosomal aspartic protease; EC=... 170 4e-84
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ... 180 2e-83
FJ654712_1(FJ654712|pid:none) Chrysomela tremulae aspartic prote... 181 3e-82
AF420068_1(AF420068|pid:none) Clonorchis sinensis aspartic prote... 165 3e-81
FN316604_1(FN316604|pid:none) Schistosoma japonicum isolate Anhu... 168 3e-80
FN316609_1(FN316609|pid:none) Schistosoma japonicum isolate Anhu... 167 6e-80
U90750_1(U90750|pid:none) Schistosoma japonicum aspartic proteas... 167 6e-80
FN316577_1(FN316577|pid:none) Schistosoma japonicum isolate Anhu... 167 6e-80
protein update 2009. 6.20
PSORT

psg: 0.98 gvh: 0.77 alm: 0.41 top: 0.57 tms: 0.00 mit: 0.36 mip: 0.08
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: extracellular, including cell wall
20.0 %: mitochondrial
16.0 %: nuclear
12.0 %: vacuolar
4.0 %: cytoplasmic
4.0 %: cytoskeletal

>> prediction for VFG726 is exc

5' end seq. ID VFG726F
5' end seq.
>VFG726F.Seq
AATTGTCACCTGACTTACATAAAAGAAAATGAAATTACTTATTTTAACTTTATTTTTAGC
TACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGA
ATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTAC
CACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTAC
CCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATC
AAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGC
CTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTAT
GTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATT
ATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGATGGTAT
TTTAGGTCTTGCTTT----------
Length of 5' end seq. 555
3' end seq. ID VFG726Z
3' end seq.
>VFG726Z.Seq
----------TCTCATTCGGTTCAATCGATAACACCAAATACACTGGTGACATTACCTAC
GTCCCATTAACCAACGAAACCTATTGGGAATTCGTTATGGATGACTTTGCTATCGATGGT
CAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGATTCAGGTACATCACTC
ATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTAGGTGCTGTCATCTTA
AATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTACCAAATGTTACCATC
ACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTTTTAGAAGTTACTGAG
TTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTAAACATGGGAAATTTC
TGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTCGATTTTGGTAATAAA
CAAGTTGGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATTAATTTATATTTAAGA
TAGAAAT
Length of 3' end seq. 537
Connected seq. ID VFG726P
Connected seq.
>VFG726P.Seq
AATTGTCACCTGACTTACATAAAAGAAAATGAAATTACTTATTTTAACTTTATTTTTAGC
TACTATTGTTTTAGCTCAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGA
ATCTAGAAGAAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTAC
CACAATCCCAATTTCAGATTTTGAAGATGCTCAATACTATGGTGCCATTACCATTGGTAC
CCCAGGTCAAGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATC
AAAGAAATGTCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAACAGCGGTGC
CTCAAGCACATATGTCGCCAACGGAACTGATTTCACCATCCAATACGGTAGTGGTGCTAT
GTCAGGTTTTGTCTCTCAAGATTCCGTCACTGTTGGTTCATTAACTGTTAAAGATCAATT
ATTCGCTGAAGCCACTGCCGAACCAGGTATTGCTTTCGATTTCGCCAAATTCGATGGTAT
TTTAGGTCTTGCTTT----------TCTCATTCGGTTCAATCGATAACACCAAATACACT
GGTGACATTACCTACGTCCCATTAACCAACGAAACCTATTGGGAATTCGTTATGGATGAC
TTTGCTATCGATGGTCAATCAGCTGGTTTCTGTGGTACTACTTGTCACGCAATTTGCGAT
TCAGGTACATCACTCATTGCTGGTCCAATGGCTGATATTACTGCCCTCAATGAAAAATTA
GGTGCTGTCATCTTAAATGGTGAAGGTGTCTTCTCTGATTGTAGCGTTATCAACACCTTA
CCAAATGTTACCATCACCGTTGCTGGTCGTGAATTTGTTTTAACTCCAAAAGAATACGTT
TTAGAAGTTACTGAGTTCGGAAAGACTGAATGTTTGAGTGGATTTATGGGTATCGAGTTA
AACATGGGAAATTTCTGGATCCTTGGTGATGTTTTCATCTCTGCTTACTATACTGTATTC
GATTTTGGTAATAAACAAGTTGGTTTCGCAACTGCCATTCAAGGTTAAATTTTTTTAATT
AATTTATATTTAAGATAGAAAT
Length of connected seq. 1092
Full length Seq ID -
Full length Seq. -
Length of full length seq. -