VFG721
Library VF
(Link to library)
Clone ID VFG721
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15331-1
Original site URL
Representative seq. ID VFG721P
(Link to Original site)
Representative DNA sequence
>VFG721 (VFG721Q) /CSM/VF/VFG7-A/VFG721Q.Seq.d/
GTAGTTATTTAAGTAATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGT
GAATCCGTCACCGAAGGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTC
GATGCTTGTTTAGCTCAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACT
GGTATGGTTATGATTTTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTT
GTTCGTGAAGCTGTTAAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAA
ACTTGCAATGTTTTAGTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCAC
ATTGGTAAAGTTAACCCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTAT
GCCACCAACGAAACCCCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTC
AACAAATTAACTGAATTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAG
ACTCXXXXXXXXXXCCAGATGCCAAGACTCAAGTCACTGTTGAATACAAAAAAGAAGGTC
ACAAAATCACTCCAGTCAGAGTACACACCATCGTTATTTCAACTCAACACGACGAAAAAG
TCACCAACGAACAAATCAGAGCTGATTTGAAAGAATTAGTCATCAAAGCTGTTGTTCCAG
CTCAATACTTAGACGATAACACCATCTACCATTTGAATCCATCAGGTCGTTTCGTCATTG
GTGGCCCAATGGGTGATTCTGGTTTAACCGGTCGTAAGATCATCATTGATTCATATGGTG
GTTGGGGTGCTCACGGTGGTGGTGCTTTCTCTGGTAAAGATGCCACTAAAGTCGATCGTT
CTGGTGCTTACGCTGCTAGATGGATCGCTAAATCTTTAGTTGCCGCTGGTCTTGCCGATC
GTTGTTTAGTTCAAGTTTCATACTCTATTGGTGTTGCCAAGCCACTCAGTGTCTTTGTTG
ATACCTATGGTACCGGTAAAAAGACTGATGCTGAAATCCTTGCCATCATCGATAATAACT
TTGATTTACGTCCAGGTTGTTTAATGCGTGACCTCCAATTAACTCGTCCAATTTTCCAAA
AAACTGCCTCTGGTGGTCACTTTGGTAGAAATGATCCAGACTTTACCTGGGAAACCGTCA
AAGAACTCAAGATGTAAGGATAGATCAANNAATAAATAAGNATAGATAAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
vvi*VIFHTIYKMSSYLFTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKT
GMVMILGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVH
IGKVNPEDIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAK
T---

---PDAKTQVTVEYKKEGHKITPVRVHTIVISTQHDEKVTNEQIRADLKELVIKAVVPAQ
YLDDNTIYHLNPSGRFVIGGPMGDSGLTGRKIIIDSYGGWGAHGGGAFSGKDATKVDRSG
AYAARWIAKSLVAAGLADRCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDNNFD
LRPGCLMRDLQLTRPIFQKTASGGHFGRNDPDFTWETVKELKM*g*ixx*ixidk*


Translated Amino Acid sequence (All Frames)
Frame A:
vvi*VIFHTIYKMSSYLFTSESVTEGHPDKICDQVSDAVLDACLAQDPLSKVACETATKT
GMVMILGEITTKANVDYQKVVREAVKKIGYDDSSKGFDYKTCNVLVAIEQQSPDIAQGVH
IGKVNPEDIGAGDQGHMFGYATNETPTLMPLTHFLASELVNKLTELRHNGTLAWARPDAK
T---

---PDAKTQVTVEYKKEGHKITPVRVHTIVISTQHDEKVTNEQIRADLKELVIKAVVPAQ
YLDDNTIYHLNPSGRFVIGGPMGDSGLTGRKIIIDSYGGWGAHGGGAFSGKDATKVDRSG
AYAARWIAKSLVAAGLADRCLVQVSYSIGVAKPLSVFVDTYGTGKKTDAEILAIIDNNFD
LRPGCLMRDLQLTRPIFQKTASGGHFGRNDPDFTWETVKELKM*g*ixx*ixidk*

Frame B:
*lfk*yftqyikchliyslvnpspkviqiksvikyqmlfsmlv*lkihyqkllvklqpkl
vwl*f*vklppkptltikklfvkllkrlvmmthqkvlitklamf*lqlnnnhqillkvst
lvkltqkilvlvikvtclvmpptkpql*chllisspln*stn*lnyvtmvp*pglvqmpr
l---

---qmprlksllntkkkvtkslqseytpslfqlnttkksptnkseli*kn*sskllfqln
t*titpsti*ihqvvsslvaqwvilv*pvvrsslihmvvgvltvvvlslvkmplksivlv
ltlldgslnl*lplvlpivv*fkfhtllvlpshsvsllipmvpvkrlmlkslpssiitli
yvqvv*cvtsn*lvqfskklplvvtlvemiqtlpgkpsknsrckdrsxnk*x*in

Frame C:
sylsnishni*nvilfih**irhrrssr*nl*ssirccsrclfssrsiikscl*ncnqnw
ygydfr*nyhqsqr*lskscs*sc*kdwl**likrf*lqnlqcfscn*ttitrycsrcph
w*s*prrywcw*srshvwlchqrnpnfnatysfprl*isqqin*itsqwylslgssrcqd
---

---rcqdsshc*iqkrrsqnhssqsthhryfnstrrkshqrtnqs*ferishqsccsssi
lrr*hhlpfesirsfrhwwpng*fwfnrs*dhh*fiwwlgcsrwwcflw*rch*srsfwc
lrc*mdr*ifscrwscrslfsssfilywccqatqclc*ylwyr*kd*c*npchhr**l*f
tsrlfna*ppinssnfpknclwwslw*k*srlylgnrqrtqdvridqxinkxr*i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFG721 (VFG721Q) /CSM/VF/VFG7-A/VFG721Q.Seq.d/ 2407 0.0
VFF394 (VFF394Q) /CSM/VF/VFF3-D/VFF394Q.Seq.d/ 1368 0.0
VFD479 (VFD479Q) /CSM/VF/VFD4-D/VFD479Q.Seq.d/ 1366 0.0
VFF635 (VFF635Q) /CSM/VF/VFF6-B/VFF635Q.Seq.d/ 1354 0.0
VFB666 (VFB666Q) /CSM/VF/VFB6-C/VFB666Q.Seq.d/ 1354 0.0
VFM340 (VFM340Q) /CSM/VF/VFM3-B/VFM340Q.Seq.d/ 1344 0.0
VFI116 (VFI116Q) /CSM/VF/VFI1-A/VFI116Q.Seq.d/ 1344 0.0
VFN128 (VFN128Q) /CSM/VF/VFN1-B/VFN128Q.Seq.d/ 1340 0.0
VFM766 (VFM766Q) /CSM/VF/VFM7-C/VFM766Q.Seq.d/ 1338 0.0
VFL243 (VFL243Q) /CSM/VF/VFL2-B/VFL243Q.Seq.d/ 1338 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ390497|AJ390497.1 Candida albicans partial mRNA for S-adenosylmethionine synthetase 2 (sam2 gene). 107 5e-60 5
AX830438|AX830438.1 Sequence 1158 from Patent WO03072602. 109 6e-54 6
AX819408|AX819408.1 Sequence 1158 from Patent EP1338608. 109 6e-54 6
AX595308|AX595308.1 Sequence 962 from Patent EP1258494. 109 6e-54 6
M23368|M23368.1 Saccharomyces cerevisiae S-adenosylmethionine synthetase (SAM2) gene, complete cds. 109 6e-53 6
U33057|U33057.1 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and lambda 3073. 109 3e-45 7
AB087843|AB087843.1 Pisum sativum SAMS-2 mRNA for S-adenosylmethionine synthetase-2, complete cds. 74 1e-39 6
CD858942|CD858942.1 CI.003K13F020204 CI Pisum sativum cDNA clone CI003K13, mRNA sequence. 82 1e-39 6
Z71271|Z71271.1 C.roseus mRNA for S-adenosyl-L-methionine synthetase 1. 84 1e-37 5
BI263618|BI263618.1 NF089B12PL1F1101 Phosphate starved leaf Medicago truncatula cDNA clone NF089B12PL 5', mRNA sequence. 105 2e-37 4
dna update 2004. 3.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54F07) RecName: Full=S-adenosylmethionine synthetase; ... 412 0.0
AB461924_1(AB461924|pid:none) Cylindrotheca closterium MAT mRNA ... 300 e-148
AB461925_1(AB461925|pid:none) Ditylum brightwellii MAT mRNA for ... 294 e-146
AB461922_1(AB461922|pid:none) Asterionella glacialis MAT mRNA fo... 288 e-144
(A9NUH8) RecName: Full=S-adenosylmethionine synthetase 1; ... 296 e-144
(Q9FPL6) RecName: Full=S-adenosylmethionine synthetase 2; ... 287 e-143
(A7PQS0) RecName: Full=S-adenosylmethionine synthetase 1; ... 293 e-142
AM449314_5(AM449314|pid:none) Vitis vinifera contig VV78X266403.... 292 e-142
FJ461753_1(FJ461753|pid:none) Chrysanthemum coronarium S-adenosy... 289 e-142
(P50301) RecName: Full=S-adenosylmethionine synthetase 1; ... 296 e-142
protein update 2009. 6.20
PSORT

psg: 0.88 gvh: 0.51 alm: 0.41 top: 0.37 tms: 0.00 mit: 0.37 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

24.0 %: cytoplasmic
24.0 %: mitochondrial
24.0 %: nuclear
12.0 %: vacuolar
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for VFG721 is cyt

5' end seq. ID VFG721F
5' end seq.
>VFG721F.Seq
GTAGTTATTTAAGTAATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGT
GAATCCGTCACCGAAGGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTC
GATGCTTGTTTAGCTCAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACT
GGTATGGTTATGATTTTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTT
GTTCGTGAAGCTGTTAAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAA
ACTTGCAATGTTTTAGTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCAC
ATTGGTAAAGTTAACCCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTAT
GCCACCAACGAAACCCCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTC
AACAAATTAACTGAATTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAG
ACTC----------
Length of 5' end seq. 544
3' end seq. ID VFG721Z
3' end seq.
>VFG721Z.Seq
----------CCAGATGCCAAGACTCAAGTCACTGTTGAATACAAAAAAGAAGGTCACAA
AATCACTCCAGTCAGAGTACACACCATCGTTATTTCAACTCAACACGACGAAAAAGTCAC
CAACGAACAAATCAGAGCTGATTTGAAAGAATTAGTCATCAAAGCTGTTGTTCCAGCTCA
ATACTTAGACGATAACACCATCTACCATTTGAATCCATCAGGTCGTTTCGTCATTGGTGG
CCCAATGGGTGATTCTGGTTTAACCGGTCGTAAGATCATCATTGATTCATATGGTGGTTG
GGGTGCTCACGGTGGTGGTGCTTTCTCTGGTAAAGATGCCACTAAAGTCGATCGTTCTGG
TGCTTACGCTGCTAGATGGATCGCTAAATCTTTAGTTGCCGCTGGTCTTGCCGATCGTTG
TTTAGTTCAAGTTTCATACTCTATTGGTGTTGCCAAGCCACTCAGTGTCTTTGTTGATAC
CTATGGTACCGGTAAAAAGACTGATGCTGAAATCCTTGCCATCATCGATAATAACTTTGA
TTTACGTCCAGGTTGTTTAATGCGTGACCTCCAATTAACTCGTCCAATTTTCCAAAAAAC
TGCCTCTGGTGGTCACTTTGGTAGAAATGATCCAGACTTTACCTGGGAAACCGTCAAAGA
ACTCAAGATGTAAGGATAGATCAANNAATAAATAAGNATAGATAAATAA
Length of 3' end seq. 699
Connected seq. ID VFG721P
Connected seq.
>VFG721P.Seq
GTAGTTATTTAAGTAATATTTCACACAATATATAAAATGTCATCTTATTTATTCACTAGT
GAATCCGTCACCGAAGGTCATCCAGATAAAATCTGTGATCAAGTATCAGATGCTGTTCTC
GATGCTTGTTTAGCTCAAGATCCATTATCAAAAGTTGCTTGTGAAACTGCAACCAAAACT
GGTATGGTTATGATTTTAGGTGAAATTACCACCAAAGCCAACGTTGACTATCAAAAAGTT
GTTCGTGAAGCTGTTAAAAAGATTGGTTATGATGACTCATCAAAAGGTTTTGATTACAAA
ACTTGCAATGTTTTAGTTGCAATTGAACAACAATCACCAGATATTGCTCAAGGTGTCCAC
ATTGGTAAAGTTAACCCAGAAGATATTGGTGCTGGTGATCAAGGTCACATGTTTGGTTAT
GCCACCAACGAAACCCCAACTTTAATGCCACTTACTCATTTCCTCGCCTCTGAATTAGTC
AACAAATTAACTGAATTACGTCACAATGGTACCTTAGCCTGGGCTCGTCCAGATGCCAAG
ACTC----------CCAGATGCCAAGACTCAAGTCACTGTTGAATACAAAAAAGAAGGTC
ACAAAATCACTCCAGTCAGAGTACACACCATCGTTATTTCAACTCAACACGACGAAAAAG
TCACCAACGAACAAATCAGAGCTGATTTGAAAGAATTAGTCATCAAAGCTGTTGTTCCAG
CTCAATACTTAGACGATAACACCATCTACCATTTGAATCCATCAGGTCGTTTCGTCATTG
GTGGCCCAATGGGTGATTCTGGTTTAACCGGTCGTAAGATCATCATTGATTCATATGGTG
GTTGGGGTGCTCACGGTGGTGGTGCTTTCTCTGGTAAAGATGCCACTAAAGTCGATCGTT
CTGGTGCTTACGCTGCTAGATGGATCGCTAAATCTTTAGTTGCCGCTGGTCTTGCCGATC
GTTGTTTAGTTCAAGTTTCATACTCTATTGGTGTTGCCAAGCCACTCAGTGTCTTTGTTG
ATACCTATGGTACCGGTAAAAAGACTGATGCTGAAATCCTTGCCATCATCGATAATAACT
TTGATTTACGTCCAGGTTGTTTAATGCGTGACCTCCAATTAACTCGTCCAATTTTCCAAA
AAACTGCCTCTGGTGGTCACTTTGGTAGAAATGATCCAGACTTTACCTGGGAAACCGTCA
AAGAACTCAAGATGTAAGGATAGATCAANNAATAAATAAGNATAGATAAATAA
Length of connected seq. 1243
Full length Seq ID -
Full length Seq. -
Length of full length seq. -