VFG702 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFG702
Library	VF (Link to library)
Clone ID	VFG702 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16602-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFG7-A/VFG702Q.Seq.d/
Representative seq. ID	VFG702E (Link to Original site)
Representative DNA sequence	>VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/ AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT GATCGTCGCCGAAGCTGATTTTGTAGGTTCAAGCCAATTACAAAAGATCAGAAAATCCAT CCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTGA TTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCTG TATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTGT TGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCC AACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAAT CAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGT TGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTTT AGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAGA TCTCATCAACAAATTCAAACAAGGTATCTTCAACATTGCTGCCATCTCCTTGGAAATTGG TTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAGC CATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGC TGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGT CGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTNGATTA AGATTNAATAAATAAATTTTTTTTTTCAAAAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	vsvllylILIHNKMSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSI RGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCIIFCKDNIAEVKRVINTQRV GAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKV GASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEEDLINKFKQGIFNIAAISLEIG YPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAKKV VVEEKKEESDDDMGMGLXDdxinkfffsk
Translated Amino Acid sequence (All Frames)	Frame A: slsitlslnshtqqdvrgrkkkerfhksyqafhhlrqndrrrsfcrfkpitkdqkih pwyrcrshgedydpghpfsftrtrclkyllktkhlyhflrhrstcyqystc wcpssrcfrskrcyhpsrsnwygtnpnlfpprfkdchnqqrsnryrqsphhnrsks wclrsypltkiehqtihlwfrtknhlcwcllftiylrrshqqiqtrylqhcchllgnw lpnrcfnstfshecfqefishlirnllhfrcckiqisrcccpsccrsirccsscrcqes rrrrkerrirygygslxlrxnkifffkk Frame B: vsvllylILIHNKMSGAGSKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSI RGIGAVLMGKKTMIRKVIRDLADSKPELDALNTYLKQNTCIIFCKDNIAEVKRVINTQRV GAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKV GASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSISEEDLINKFKQGIFNIAAISLEIG YPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAAAAPVAAAPSAAAPAAAAKKV VVEEKKEESDDDMGMGLXDdxinkfffsk Frame C: sqyyfifkfsyttrcpgqevkertfslkklpsfsplttksspklilvqanykrsenps vvsvpfswvrrlsvrssvililnqnsmpiptnktpvsfsvkitslklnvlsilnvl vpqlkqvfslqtmlssqpvqlvwnqpkplsskirlplkstevksissmkstslkpvkkl vpqklpsykntsnhspmvnqkssmmlvpvihhlslkkisstnsnkvsstllpspwklv tqpllqfhiqsmlsriypshskpltlsmllknsnqplllpqllplhplllqlplprks sskkrkknqmmiwvwvsxikixinfffqk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFL888 (VFL888Q) /CSM/VF/VFL8-D/VFL888Q.Seq.d/ 1649 0.0 VFG702 (VFG702Q) /CSM/VF/VFG7-A/VFG702Q.Seq.d/ 1649 0.0 VFF854 (VFF854Q) /CSM/VF/VFF8-C/VFF854Q.Seq.d/ 1649 0.0 VFE158 (VFE158Q) /CSM/VF/VFE1-C/VFE158Q.Seq.d/ 1649 0.0 VFD767 (VFD767Q) /CSM/VF/VFD7-C/VFD767Q.Seq.d/ 1649 0.0 VFB326 (VFB326Q) /CSM/VF/VFB3-B/VFB326Q.Seq.d/ 1649 0.0 VFA871 (VFA871Q) /CSM/VF/VFA8-C/VFA871Q.Seq.d/ 1649 0.0 VFA341 (VFA341Q) /CSM/VF/VFA3-B/VFA341Q.Seq.d/ 1649 0.0 VFF848 (VFF848Q) /CSM/VF/VFF8-B/VFF848Q.Seq.d/ 1647 0.0 VFF227 (VFF227Q) /CSM/VF/VFF2-B/VFF227Q.Seq.d/ 1643 0.0
own update	2004. 8. 9
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N X56194\|X56194.1 D. discoideum mRNA for ribosomal acidic phosphoprotein P0. 1550 0.0 1 CD203589\|CD203589.1 Ls_AM1_10H07_T7 Litomosoides sigmodontis adult male 1 Litomosoides sigmodontis cDNA clone Ls_AM1_10H07 5', mRNA sequence. 62 2e-06 2 CF601244\|CF601244.1 tac46e01.y1 Hydra EST -IV Hydra magnipapillata cDNA 5' similar to SW:RLA1_CHICK P18660 60S ACIDIC RIBOSOMAL PROTEIN P1. ;, mRNA sequence. 44 2e-04 2 AA901452\|AA901452.1 SWOv3MCAM03C04 Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone onch28 5' similar to TR:P91913 P91913 RIBOSOMAL PROTEIN P1 HOMOLOG. ;contains element MER22 repetitive element ;, mRNA sequence. 54 6e-04 2 BG310507\|BG310507.1 SWOv3MCAM56B08SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWOv3MCAM56B08 5', mRNA sequence. 54 7e-04 2 AW355195\|AW355195.1 PFOvAFCB597K Onchocerca volvulus adult female cDNA following ivermectin (SAW98PF-OvAF) Onchocerca volvulus cDNA clone PFOvAFCB597 5', mRNA sequence. 54 7e-04 2 BE760989\|BE760989.1 SWOvL2CAS15E12SK Onchocerca volvulus L2 larvae cDNA (SAW98MLW-OvL2) Onchocerca volvulus cDNA clone SWOvL2CAS15E12 5', mRNA sequence. 54 7e-04 2 AI130065\|AI130065.1 SWOvL3CAN53C10SK Onchocerca volvulus infective larva cDNA (SAW94WL-OvL3) Onchocerca volvulus cDNA clone SWOvL3CAN53C10 5', mRNA sequence. 54 7e-04 2 AA618720\|AA618720.1 SWOv3MCA1033SK Onchocerca volvulus molting L3 larva cDNA (SL96MLW-OvmL3) Onchocerca volvulus cDNA clone SWmL3CO1033 5', mRNA sequence. 54 7e-04 2 BE491921\|BE491921.1 SWOvMfCAR14E06SK Onchocerca volvulus microfilaria cDNA (SAW98MLW-OvMf) Onchocerca volvulus cDNA clone SWOvMfCAR14E06 5', mRNA sequence. 54 7e-04 2
dna update	2004. 3.10
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (P22685) RecName: Full=60S acidic ribosomal protein P0; 500 e-140 R5DOP0(S14012) ribosomal protein P0 - slime mold (Dictyostelium ... 496 e-139 AY857422_1(AY857422\|pid:none) Suberites domuncula L10e/P0 mRNA, ... 252 2e-65 EU069460_1(EU069460\|pid:none) Stylophora pistillata 60S acidic r... 244 3e-63 AY217739_1(AY217739\|pid:none) Toxoplasma gondii ribosomal P prot... 244 4e-63 (Q9U3U0) RecName: Full=60S acidic ribosomal protein P0; ... 242 2e-62 AF390866_1(AF390866\|pid:none) Toxoplasma gondii ribosomal phosph... 241 4e-62 AB284186_1(AB284186\|pid:none) Neospora caninum mRNA for ribosoma... 240 5e-62 AJ457827_1(AJ457827\|pid:none) Bombyx mori mRNA for ribosomal P0 ... 239 1e-61 DQ516397_1(DQ516397\|pid:none) Strongyloides ratti acidic ribosom... 239 1e-61
protein update	2009. 7.10
PSORT	psg: 0.62 gvh: 0.44 alm: 0.40 top: 0.53 tms: 0.00 mit: 0.30 mip: 0.04 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 52.0 %: cytoplasmic 24.0 %: nuclear 16.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: vesicles of secretory system >> prediction for VFG702 is cyt
5' end seq. ID	VFG702F
5' end seq.	>VFG702F.Seq AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT GATCGTCGCCGAAGCTGATTTTGTAGGTTCAAGCCAATTACAAAAGATCAGAAAATCCAT CCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTGA TTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCTG TATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTGT TGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCC AACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAAT CAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGT TGGTGCCTCAGAAG----------
Length of 5' end seq.	554
3' end seq. ID	VFG702Z
3' end seq.	>VFG702Z.Seq ----------GGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAA TCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAG TTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTT TAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAG ATCTCATCAACAAATTCAAACAAGGTATCTTCAACATTGCTGCCATCTCCTTGGAAATTG GTTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAG CCATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTG CTGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAG TCGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTNGATT AAGATTNAATAAATAAATTTTTTTTTTCAAAAAA
Length of 3' end seq.	564
Connected seq. ID	VFG702P
Connected seq.	>VFG702P.Seq AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT GATCGTCGCCGAAGCTGATTTTGTAGGTTCAAGCCAATTACAAAAGATCAGAAAATCCAT CCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTGA TTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCTG TATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTGT TGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCC AACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAAT CAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGT TGGTGCCTCAGAAG----------GGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAA GATTGCCACTAAAATCAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAA AACCGGTCAAAAAGTTGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACC ATTCACCTATGGTTTAGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATC TATCTCTGAAGAAGATCTCATCAACAAATTCAAACAAGGTATCTTCAACATTGCTGCCAT CTCCTTGGAAATTGGTTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTT CAAGAATTTATTAGCCATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATT CAAATCAGCCGCTGCTGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGC CGCTGCCAAGAAAGTCGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTAT GGGTCTCTTNGATTAAGATTNAATAAATAAATTTTTTTTTTCAAAAAA
Length of connected seq.	1118
Full length Seq ID	VFG702E
Full length Seq.	>VFG702E.Seq AGTCTCAGTATTACTTTATCTTTAAATTCTCATACACAACAAGATGTCCGGGGCAGGAAG TAAAAGAAAGAACGTTTTCATTGAAAAAGCTACCAAGCTTTTCACCACTTACGACAAAAT GATCGTCGCCGAAGCTGATTTTGTAGGTTCAAGCCAATTACAAAAGATCAGAAAATCCAT CCGTGGTATCGGTGCCGTTCTCATGGGTAAGAAGACTATGATCCGTAAGGTCATCCGTGA TTTAGCTGATTCTAAACCAGAACTCGATGCCTTAAATACCTACTTAAAACAAAACACCTG TATCATTTTCTGTAAAGATAACATCGCTGAAGTTAAACGTGTTATCAATACTCAACGTGT TGGTGCCCCAGCTAAAGCAGGTGTTTTCGCTCCAAACGATGTTATCATCCCAGCCGGTCC AACTGGTATGGAACCAACCCAAACCTCTTTCCTCCAAGATTTAAAGATTGCCACTAAAAT CAACAGAGGTCAAATCGATATCGTCAATGAAGTCCACATCATTAAAACCGGTCAAAAAGT TGGTGCCTCAGAAGCTACCCTCTTACAAAAATTGAACATCAAACCATTCACCTATGGTTT AGAACCAAAAATCATCTATGATGCTGGTGCCTGTTATTCACCATCTATCTCTGAAGAAGA TCTCATCAACAAATTCAAACAAGGTATCTTCAACATTGCTGCCATCTCCTTGGAAATTGG TTACCCAACCGTTGCTTCAATTCCACATTCAGTCATGAATGCTTTCAAGAATTTATTAGC CATCTCATTCGAAACCTCTTACACTTTCGATGCTGCTGAAAAATTCAAATCAGCCGCTGC TGCTGCCCCAGTTGCTGCCGCTCCATCCGCTGCTGCTCCAGCTGCCGCTGCCAAGAAAGT CGTCGTCGAAGAAAAGAAAGAAGAATCAGATGATGATATGGGTATGGGTCTCTTNGATTA AGATTNAATAAATAAATTTTTTTTTTCAAAAAA
Length of full length seq.	993

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas