VFG581
Library VF
(Link to library)
Clone ID VFG581
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12898-1
Original site URL
Representative seq. ID VFG581P
(Link to Original site)
Representative DNA sequence
>VFG581 (VFG581Q) /CSM/VF/VFG5-D/VFG581Q.Seq.d/
AACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGTTGATG
GTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAATTAG
GAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTCCAC
CAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAG
TTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTGATT
TTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCA
TTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCGAGT
TGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAA
CCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAAGTT
TATCACATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAA
AACCAAACGATAAAATCATTTATATGGATGGTGGTXXXXXXXXXXAGGTGGNGNAGNTCC
ATACNAACTCCCNAGAGAATTAGGNATTTACAAAGAAGTTNAACATACTGAAGGTCTCNC
NGCAACTGAAATCGNTAAAAGNANCCTTGATAATAGACTTCAATATGAAGCTCGNAATCG
TAAAAAAGNAGCNAAAGNAATTAATTTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
QVFTMSTTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPP
VMNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYEGI
KKSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYTSL
SHFLPTTRKIVQFSEGRSPKPNDKIIYMDGG---

---GGXXPYXLPRELGIYKEVXHTEGLXATEIXKXXLDNRLQYEARNRKKXAKXINF


Translated Amino Acid sequence (All Frames)
Frame A:
nkflq*vlqliksqlefmlmvvli*cildmqmh*dkqen*eif**lvyiqmkklqkikvh
ql*mnkkdikqyvhvngqmklqkvhlil*lkniwiv*tvifvymvkifqlvqmvkmfmka
lkrvvnldssnvlkvfqqpswlvvcyyapktifkmfqvskphhwevsiqtfytnnhhtqv
yhissqpperssnsqkvvhqnqtiksfiwmv---

---rwxxsixtpxrirxlqrsxty*rsxxn*nr*kxp***tsi*ssxs*kxsxxn*f

Frame B:
tsfyneyyn**kan*slc*wlf*fnafwtckciktskrirryfsswctyr*rnckk*rst
sye*trki*sstcm*mgr*scrrctlyfn*rifg*fkl*flctw*ryfswcrw*rcl*rh
*kew*i*ihqty*rcfnnrvgwsyvimhqrpsskcfr*anltigrcqskrftqtitihkf
itfppnhqkdrpilrrsftktkr*nhlygww---

---GGXXPYXLPRELGIYKEVXHTEGLXATEIXKXXLDNRLQYEARNRKKXAKXINF

Frame C:
QVFTMSTTTNKKPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGPP
VMNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYEGI
KKSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYTSL
SHFLPTTRKIVQFSEGRSPKPNDKIIYMDGG---

---vxxxhtnsxen*xftkkxnilkvsxqlksxkxxliidfnmklxivkkxxkxli

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFG581 (VFG581Q) /CSM/VF/VFG5-D/VFG581Q.Seq.d/ 1447 0.0
VFN722 (VFN722Q) /CSM/VF/VFN7-A/VFN722Q.Seq.d/ 1259 0.0
VFI626 (VFI626Q) /CSM/VF/VFI6-B/VFI626Q.Seq.d/ 1259 0.0
VFF530 (VFF530Q) /CSM/VF/VFF5-B/VFF530Q.Seq.d/ 1259 0.0
VFE318 (VFE318Q) /CSM/VF/VFE3-A/VFE318Q.Seq.d/ 1259 0.0
VFG365 (VFG365Q) /CSM/VF/VFG3-C/VFG365Q.Seq.d/ 1251 0.0
SSK263 (SSK263Q) /CSM/SS/SSK2-C/SSK263Q.Seq.d/ 1249 0.0
CFG421 (CFG421Q) /CSM/CF/CFG4-A/CFG421Q.Seq.d/ 1245 0.0
VFA266 (VFA266Q) /CSM/VF/VFA2-C/VFA266Q.Seq.d/ 1241 0.0
VFJ833 (VFJ833Q) /CSM/VF/VFJ8-B/VFJ833Q.Seq.d/ 1233 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BG140383|BG140383.1 EST480825 wild tomato pollen Lycopersicon pennellii cDNA clonecLPP17G1 5' sequence, mRNA sequence. 92 2e-16 3
BG131085|BG131085.1 EST463977 tomato crown gall Lycopersicon esculentum cDNA clone cTOE2D11 5' sequence, mRNA sequence. 92 3e-16 3
AW217896|AW217896.1 EST296610 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD1C15, mRNA sequence. 92 3e-15 2
AI778006|AI778006.1 EST258885 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES3N17, mRNA sequence. 92 4e-15 2
AW217261|AW217261.1 EST295975 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC89G22, mRNA sequence. 92 4e-15 2
AW219042|AW219042.1 EST301524 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX2H3, mRNA sequence. 92 4e-15 2
BG138134|BG138134.1 EST478576 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP8K18 5' sequence, mRNA sequence. 92 4e-15 2
BG642411|BG642411.1 EST355887 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD11C15 5' end, mRNA sequence. 92 5e-15 2
BG133537|BG133537.1 EST466525 tomato crown gall Lycopersicon esculentum cDNA clone cTOE13N15 5' sequence, mRNA sequence. 92 1e-14 1
BI935302|BI935302.1 EST555191 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD22O12 5' end, mRNA sequence. 92 1e-14 1
dna update 2004. 3.10
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55BZ4) RecName: Full=Ethanolamine-phosphate cytidylyltransfera... 428 e-119
BT077764_1(BT077764|pid:none) Lepeophtheirus salmonis clone lsal... 232 1e-59
AL663030_9(AL663030|pid:none) Mouse DNA sequence from clone RP23... 231 2e-59
AK166319_1(AK166319|pid:none) Mus musculus mammary gland RCB-052... 231 2e-59
AE014134_2379(AE014134|pid:none) Drosophila melanogaster chromos... 231 3e-59
(Q5EA75) RecName: Full=Ethanolamine-phosphate cytidylyltransfera... 229 8e-59
AC087079_11(AC087079|pid:none) Caenorhabditis elegans cosmid Y37... 225 1e-57
AY189524_1(AY189524|pid:none) Mus musculus CTP:ethanolaminephosp... 225 1e-57
BC088018_1(BC088018|pid:none) Xenopus tropicalis phosphate cytid... 224 2e-57
AM502250_130(AM502250|pid:none) Leishmania infantum chromosome 32. 214 3e-54
protein update 2009. 6.20
PSORT

psg: 0.52 gvh: 0.53 alm: 0.52 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
32.0 %: mitochondrial
28.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: peroxisomal

>> prediction for VFG581 is cyt

5' end seq. ID VFG581F
5' end seq.
>VFG581F.Seq
AACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGTTGATG
GTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAATTAG
GAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTCCAC
CAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAG
TTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTGATT
TTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCA
TTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCGAGT
TGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAA
CCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAAGTT
TATCACATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAA
AACCAAACGATAAAATCATTTATATGGATGGTGGT----------
Length of 5' end seq. 635
3' end seq. ID VFG581Z
3' end seq.
>VFG581Z.Seq
----------AGGTGGNGNAGNTCCATACNAACTCCCNAGAGAATTAGGNATTTACAAAG
AAGTTNAACATACTGAAGGTCTCNCNGCAACTGAAATCGNTAAAAGNANCCTTGATAATA
GACTTCAATATGAAGCTCGNAATCGTAAAAAAGNAGCNAAAGNAATTAATTTC
Length of 3' end seq. 163
Connected seq. ID VFG581P
Connected seq.
>VFG581P.Seq
AACAAGTTTTTACAATGAGTACTACAACTAATAAAAAGCCAATTAGAGTTTATGTTGATG
GTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAATTAG
GAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTCCAC
CAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATGAAG
TTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTGATT
TTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAGGCA
TTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCGAGT
TGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGCAAA
CCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAAGTT
TATCACATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAA
AACCAAACGATAAAATCATTTATATGGATGGTGGT----------AGGTGGNGNAGNTCC
ATACNAACTCCCNAGAGAATTAGGNATTTACAAAGAAGTTNAACATACTGAAGGTCTCNC
NGCAACTGAAATCGNTAAAAGNANCCTTGATAATAGACTTCAATATGAAGCTCGNAATCG
TAAAAAAGNAGCNAAAGNAATTAATTTC
Length of connected seq. 798
Full length Seq ID -
Full length Seq. -
Length of full length seq. -