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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM540
Library AF
(Link to library)
Clone ID AFM540
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM540 (AFM540Q) /CSM/AF/AFM5-B/AFM540Q.Seq.d/
XXXXXXXXXXGAACAAAATTTAGTTGATTGCTCTGGTCCAGAAGAAAACTTTGGTTGTGA
TGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAACAAGGGTATTGACACTGA
AAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTGATAT
TGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAA
TGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACT
CTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGT
TTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAA
ACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATC
TGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTC
ATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGTCAANAATNAATGTGGNATTG
CATCAGNNAGCTNTTANCCACTNGCCTAGAT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---QNLVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIG
ATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVL
VVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSW
GIKGYILMSKDSQXXMWXCIXXLLXTXLD
Translated Amino Acid sequence (All Frames) 
Frame A:
---nki*lialvqkktlvvmvv**imhliislktrvltlkvvihillklvqhvysinlil
vqplkvmltllpvqrfh*rmvlnmvqyllqlmlpiivsnsihlvsimsqnvlqlnwimvf
*llvmvfkvkmmkvqy*tenkpllstrmkiiklnplmihlivldqrqiiigslkihgvph
gv*kvtf*cqrivxnxcgiasxsxxpla*


Frame B:
---tkfs*llwsrrklwl*wwfne*ci*lyh*kqgy*h*k*lsiyc*nwfnmfiq*i*yw
cnh*rlc*hycrfrdfirewcstwssiccn*cfp**fptlyiwyll*akmfsn*igswcf
scwlwcsr*r**rssikqktnhcypqe*r**s*il**fi**c*tkgk*lldr*kfmgylm
gykrlhfnvkg*sxxnvxlhqxaxxhxpr


Frame C:
---QNLVDCSGPEENFGCDGGLMNNAFDYIIKNKGIDTESSYPYTAETGSTCLFNKSDIG
ATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVL
VVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSW
GIKGYILMSKDSQXXMWXCIXXLLXTXLD
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM540 (AFM540Q) /CSM/AF/AFM5-B/AFM540Q.Seq.d/                       1183   0.0
SSJ524 (SSJ524Q) /CSM/SS/SSJ5-A/SSJ524Q.Seq.d/                       1152   0.0
SSF462 (SSF462Q) /CSM/SS/SSF4-C/SSF462Q.Seq.d/                       1152   0.0
SFC863 (SFC863Q) /CSM/SF/SFC8-C/SFC863Q.Seq.d/                       1152   0.0
AFO753 (AFO753Q) /CSM/AF/AFO7-C/AFO753Q.Seq.d/                       1152   0.0
AFK758 (AFK758Q) /CSM/AF/AFK7-C/AFK758Q.Seq.d/                       1152   0.0
CFJ354 (CFJ354Q) /CSM/CF/CFJ3-C/CFJ354Q.Seq.d/                       1148   0.0
SFG645 (SFG645Q) /CSM/SF/SFG6-B/SFG645Q.Seq.d/                       1144   0.0
AFN580 (AFN580Q) /CSM/AF/AFN5-D/AFN580Q.Seq.d/                       1142   0.0
AFM502 (AFM502Q) /CSM/AF/AFM5-A/AFM502Q.Seq.d/                       1140   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347219) Dictyostelium discoideum cDNA clone:dda26o09, 3' ...  1181   0.0    1
(X03344) Dictyostelium discoideum mRNA for cysteine proteina...  1126   0.0    1
(C92839) Dictyostelium discoideum slug cDNA, clone SSF462.       1126   0.0    1
(C91266) Dictyostelium discoideum slug cDNA, clone SSJ524.       1126   0.0    1
(BJ401286) Dictyostelium discoideum cDNA clone:dds22c19, 3' ...  1126   0.0    1
(BJ400695) Dictyostelium discoideum cDNA clone:dds14i12, 3' ...  1126   0.0    1
(BJ399605) Dictyostelium discoideum cDNA clone:dds6n16, 3' e...  1126   0.0    1
(BJ376299) Dictyostelium discoideum cDNA clone:ddc21o20, 3' ...  1126   0.0    1
(BJ352181) Dictyostelium discoideum cDNA clone:dda45m24, 3' ...  1126   0.0    1
(BJ347725) Dictyostelium discoideum cDNA clone:dda27p24, 3' ...  1126   0.0    1
dna update 2009. 4.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...   377   e-103
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...   200   2e-50
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...   200   2e-50
BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   187   2e-46
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   186   5e-46
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   185   1e-45
AY554271_1(AY554271|pid:none) Heterodera glycines cathepsin L-li...   182   8e-45
DQ474246_1(DQ474246|pid:none) Lygus lineolaris cathepsin-L mRNA,...   180   3e-44
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   178   1e-43
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...   177   2e-43
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM540 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM540Z
3' end seq. 
>AFM540Z.Seq
XXXXXXXXXXGAACAAAATTTAGTTGATTGCTCTGGTCCAGAAGAAAACTTTGGTTGTGA
TGGTGGTTTAATGAATAATGCATTTGATTATATCATTAAAAACAAGGGTATTGACACTGA
AAGTAGTTATCCATATACTGCTGAAACTGGTTCAACATGTTTATTCAATAAATCTGATAT
TGGTGCAACCATTAAAGGTTATGTTAACATTACTGCCGGTTCAGAGATTTCATTAGAGAA
TGGTGCTCAACATGGTCCAGTATCTGTTGCAATTGATGCTTCCCATAATAGTTTCCAACT
CTATACATCTGGTATCTATTATGAGCCAAAATGTTCTCCAACTGAATTGGATCATGGTGT
TTTAGTTGTTGGTTATGGTGTTCAAGGTAAAGATGATGAAGGTCCAGTATTAAACAGAAA
ACAAACCATTGTTATCCACAAGAATGAAGATAATAAAGTTGAATCCTCTGATGATTCATC
TGATAGTGTTAGACCAAAGGCAAATAATTATTGGATCGTTAAAAATTCATGGGGTACCTC
ATGGGGTATAAAAGGTTACATTTTAATGTCAAAGGATAGTCAANAATNAATGTGGNATTG
CATCAGNNAGCTNTTANCCACTNGCCTAGAT
Length of 3' end seq. 631
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -