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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFG487
Library VF
(Link to library)
Clone ID VFG487
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15635-1
Original site URL
Representative seq. ID VFG487P
(Link to Original site)
Representative DNA sequence 
>VFG487 (VFG487Q) /CSM/VF/VFG4-D/VFG487Q.Seq.d/
ATGCGATACAAAGAATATAACAATAACAAGAGTTATATATATTGTAGCAAGTGATAAAGA
TGATAATGAAAAAGTATATAAAGGATCAGGTAGTAATACATATATTACAATTAGTGATAT
TTTCTATAGATTCCCAATATTAATACAAGCAATTGATGAACAAGCCAGCTATACATACAA
TCAAAGTTCACCATTGTTACCAATGGCATCAACTGATAGATATGCAACATTTGTTGGAAG
TTCACCAAATGAATATATCATTTATTTCCAATCAGCATTAACACCAATCATAATAAGAGG
TTTACAATTTAAAAATGGTGGTTTCTCAACTGATGATTTCCGTCAAGCATCTGTTATCAC
CACTAGTTCAACCATAGTATCATTCGAGAATTGTTTATTCAAAGATAATGTTGGTGGTAC
AAGTGGTGCATTATTCTATAATTCACAATCATCAGCTCATATTGAAAATTGTATCTTTGA
AAATAATAAAGCTTCCGCTGGTAATGGTGGCGCTATTTATTTACCATCTGGTACTGXXXX
XXXXXXCTTGGGATCATTTATTATTTGATTCAAATAAAGCAATTAATGGTAGTGGATTAT
TTGATAATAATTCGGCAAATCAATATTATAATGCAACATTTATTTCAAATGAAGCAACAN
AGAATGGTGGTGGATCATATTTATTAGATTNTANAATATTTATGCAACAATCAAATTATC
AATCAAATAAAGCAGCAANAGGTGGTGGTATTTTTGCATTGGANACANAGCCATACTTTA
AATNTCAACTTTTCATTANANATGCAAACTTTACAATGAATTCAGCTTCANANAATGGTG
GTGCAATNTATTGTAGTAATGCAACCGCTCGTTTCAATACGANAAATTTATTNGAGGATA
ATAGTGCTACCAATTCAAGTTCTTCAACTGATTATTGNACTTCCTCTTGNGTAACTTCGC
CAGGTGATTGTGGTTGTCCAGGTGGTTGTGGTATTGAATCTGATAATGATAAAGATCCAA
ATACTGATGCTAAAATTGCTGTCGCCATTTTCATTCCAATCNCTGCCANACTTTTAGGNG
TCGTTGGTTTCCTCCTTTGGAGAACTCATGCAAAATCAAGAGGAATGAGAACTAAAACTG
CTGCNCCNTACGATGAAATTAGATTATCTCCATCTTCNCAAGATAATGATGATCAATTAT
AAATTTTTTAAAAAAAACAAAAAAAAAAGTAATAACAGTAAATAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
CDTKNITITRVIYIVASDKDDNEKVYKGSGSNTYITISDIFYRFPILIQAIDEQASYTYN
QSSPLLPMASTDRYATFVGSSPNEYIIYFQSALTPIIIRGLQFKNGGFSTDDFRQASVIT
TSSTIVSFENCLFKDNVGGTSGALFYNSQSSAHIENCIFENNKASAGNGGAIYLPSGT--
-

---WDHLLFDSNKAINGSGLFDNNSANQYYNATFISNEATXNGGGSYLLDXXIFMQQSNY
QSNKAAXGGGIFALXTXPYFKXQLFIXXANFTMNSASXNGGAXYCSNATARFNTXNLXED
NSATNSSSSTDYXTSSXVTSPGDCGCPGGCGIESDNDKDPNTDAKIAVAIFIPIXAXLLG
VVGFLLWRTHAKSRGMRTKTAAPYDEIRLSPSSQDNDDQL*if*kkqkkk**q*i
Translated Amino Acid sequence (All Frames) 
Frame A:
mrykeynnnksyiycsk**r***ksi*rir**yiyyn**yfl*ipnintsn**tsqlyiq
skftivtngin**icnicwkftk*iyhlfpisintnhnkrfti*kwwfln**fpssicyh
h*fnhsiirelfiqr*cwwykwciil*ftiissy*klyl*k**sfrw*wwrylftiwy--
-

---lgiiyyliqikqlmvvdyliiirqiniimqhlfqmkqxrmvvdhiy*ixxylcnnqi
inqikqqxvvvflhwxxshtlnxnfslxmqtlq*iqlxxmvvqxivvmqplvsirxiyxr
iivlpiqvlqliixlplx*lrqvivvvqvvvvlnlimikiqilmlkllspfsfqslpxf*
xslvssfgelmqnqee*elkllxxtmkldylhlxkimminykffkknkkksnnsk*

Frame B:
CDTKNITITRVIYIVASDKDDNEKVYKGSGSNTYITISDIFYRFPILIQAIDEQASYTYN
QSSPLLPMASTDRYATFVGSSPNEYIIYFQSALTPIIIRGLQFKNGGFSTDDFRQASVIT
TSSTIVSFENCLFKDNVGGTSGALFYNSQSSAHIENCIFENNKASAGNGGAIYLPSGT--
-

---lgsfii*fk*sn*w*wii***fgksil*cniyfk*snxewwwiifirxxniyatikl
sik*ssxrwwyfcigxxail*xstfhxxcklynefsfxxwwcnxl**cnrsfqyxkfixg
**cyqfkffn*llxfllxnfar*lwlsrwlwy*i****rsky*c*nccrhfhsnxcxtfr
xrwfpplensckikrnen*nccxxr*n*iisifxr***siinflkktkkkvitvnk

Frame C:
aiqri*q*qelyil*qvikmimkkyikdqvvihilqlvifsidsqy*ykqlmnkpaihti
kvhhcyqwhqlidmqhllevhqmnisfisnqh*hqs**evynlkmvvsqlmisvkhllsp
lvqp*yhsrivyskimlvvqvvhysiihnhqlilkivslkiiklplvmvalfiyhlvl--
-

---WDHLLFDSNKAINGSGLFDNNSANQYYNATFISNEATXNGGGSYLLDXXIFMQQSNY
QSNKAAXGGGIFALXTXPYFKXQLFIXXANFTMNSASXNGGAXYCSNATARFNTXNLXED
NSATNSSSSTDYXTSSXVTSPGDCGCPGGCGIESDNDKDPNTDAKIAVAIFIPIXAXLLG
VVGFLLWRTHAKSRGMRTKTAAPYDEIRLSPSSQDNDDQL*if*kkqkkk**q*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG487 (VFG487Q) /CSM/VF/VFG4-D/VFG487Q.Seq.d/                       2206   0.0
CFH420 (CFH420Q) /CSM/CF/CFH4-A/CFH420Q.Seq.d/                       1160   0.0
SFH259 (SFH259Q) /CSM/SF/SFH2-C/SFH259Q.Seq.d/                       1082   0.0
AFM591 (AFM591Q) /CSM/AF/AFM5-D/AFM591Q.Seq.d/                        718   0.0
SFJ178 (SFJ178Q) /CSM/SF/SFJ1-D/SFJ178Q.Seq.d/                        617   e-175
AFJ694 (AFJ694Q) /CSM/AF/AFJ6-D/AFJ694Q.Seq.d/                        494   e-138
VFG539 (VFG539Q) /CSM/VF/VFG5-B/VFG539Q.Seq.d/                        339   6e-92
SFK808 (SFK808Q) /CSM/SF/SFK8-A/SFK808Q.Seq.d/                        186   6e-46
FC-BN10 (FC-BN10Q) /CSM/FC/FC-BN/FC-BN10Q.Seq.d/                       60   9e-08
FC-535 (FC-535Q) /CSM/CG/CG-FC/FC-535Q.Seq.d/                          60   9e-08
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.  1122   0.0    17
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    38   1e-05  15
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36   1e-04  15
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    30   4e-04  17
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    40   6e-04  16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   9e-04  19
BX842642|BX842642.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 1/4.    40   0.001  15
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    32   0.001  19
AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    34   0.001  17
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   0.002  27
dna update 2004. 3. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116979_55(AC116979|pid:none) Dictyostelium discoideum chromoso...   335   2e-90
CP000678_461(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    40   2e-07
CP000678_1586(CP000678|pid:none) Methanobrevibacter smithii ATCC...    44   2e-05
CP000686_4172(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    42   5e-05
CP000678_1188(CP000678|pid:none) Methanobrevibacter smithii ATCC...    42   4e-04
AE017180_750(AE017180|pid:none) Geobacter sulfurreducens PCA, co...    39   4e-04
CP000678_411(CP000678|pid:none) Methanobrevibacter smithii ATCC ...    34   7e-04
CP001087_2096(CP001087|pid:none) Desulfobacterium autotrophicum ...    37   0.001
CP000804_2796(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    37   0.001
CP000804_2343(CP000804|pid:none) Roseiflexus castenholzii DSM 13...    39   0.006
protein update 2009. 6.20
PSORT 

 psg: 0.79  gvh: 0.43  alm: 0.20  top: 1.10  tms: 0.07  mit: 0.25  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.04  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: Golgi
	 12.0 %: mitochondrial
	 12.0 %: vesicles of secretory system
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for VFG487 is cyt
5' end seq. ID VFG487F
5' end seq. 
>VFG487F.Seq
ATGCGATACAAAGAATATAACAATAACAAGAGTTATATATATTGTAGCAAGTGATAAAGA
TGATAATGAAAAAGTATATAAAGGATCAGGTAGTAATACATATATTACAATTAGTGATAT
TTTCTATAGATTCCCAATATTAATACAAGCAATTGATGAACAAGCCAGCTATACATACAA
TCAAAGTTCACCATTGTTACCAATGGCATCAACTGATAGATATGCAACATTTGTTGGAAG
TTCACCAAATGAATATATCATTTATTTCCAATCAGCATTAACACCAATCATAATAAGAGG
TTTACAATTTAAAAATGGTGGTTTCTCAACTGATGATTTCCGTCAAGCATCTGTTATCAC
CACTAGTTCAACCATAGTATCATTCGAGAATTGTTTATTCAAAGATAATGTTGGTGGTAC
AAGTGGTGCATTATTCTATAATTCACAATCATCAGCTCATATTGAAAATTGTATCTTTGA
AAATAATAAAGCTTCCGCTGGTAATGGTGGCGCTATTTATTTACCATCTGGTACTG----
------
Length of 5' end seq. 536
3' end seq. ID VFG487Z
3' end seq. 
>VFG487Z.Seq
----------CTTGGGATCATTTATTATTTGATTCAAATAAAGCAATTAATGGTAGTGGA
TTATTTGATAATAATTCGGCAAATCAATATTATAATGCAACATTTATTTCAAATGAAGCA
ACANAGAATGGTGGTGGATCATATTTATTAGATTNTANAATATTTATGCAACAATCAAAT
TATCAATCAAATAAAGCAGCAANAGGTGGTGGTATTTTTGCATTGGANACANAGCCATAC
TTTAAATNTCAACTTTTCATTANANATGCAAACTTTACAATGAATTCAGCTTCANANAAT
GGTGGTGCAATNTATTGTAGTAATGCAACCGCTCGTTTCAATACGANAAATTTATTNGAG
GATAATAGTGCTACCAATTCAAGTTCTTCAACTGATTATTGNACTTCCTCTTGNGTAACT
TCGCCAGGTGATTGTGGTTGTCCAGGTGGTTGTGGTATTGAATCTGATAATGATAAAGAT
CCAAATACTGATGCTAAAATTGCTGTCGCCATTTTCATTCCAATCNCTGCCANACTTTTA
GGNGTCGTTGGTTTCCTCCTTTGGAGAACTCATGCAAAATCAAGAGGAATGAGAACTAAA
ACTGCTGCNCCNTACGATGAAATTAGATTATCTCCATCTTCNCAAGATAATGATGATCAA
TTATAAATTTTTTAAAAAAAACAAAAAAAAAAGTAATAACAGTAAATAAA
Length of 3' end seq. 700
Connected seq. ID VFG487P
Connected seq. 
>VFG487P.Seq
ATGCGATACAAAGAATATAACAATAACAAGAGTTATATATATTGTAGCAAGTGATAAAGA
TGATAATGAAAAAGTATATAAAGGATCAGGTAGTAATACATATATTACAATTAGTGATAT
TTTCTATAGATTCCCAATATTAATACAAGCAATTGATGAACAAGCCAGCTATACATACAA
TCAAAGTTCACCATTGTTACCAATGGCATCAACTGATAGATATGCAACATTTGTTGGAAG
TTCACCAAATGAATATATCATTTATTTCCAATCAGCATTAACACCAATCATAATAAGAGG
TTTACAATTTAAAAATGGTGGTTTCTCAACTGATGATTTCCGTCAAGCATCTGTTATCAC
CACTAGTTCAACCATAGTATCATTCGAGAATTGTTTATTCAAAGATAATGTTGGTGGTAC
AAGTGGTGCATTATTCTATAATTCACAATCATCAGCTCATATTGAAAATTGTATCTTTGA
AAATAATAAAGCTTCCGCTGGTAATGGTGGCGCTATTTATTTACCATCTGGTACTG----
------CTTGGGATCATTTATTATTTGATTCAAATAAAGCAATTAATGGTAGTGGATTAT
TTGATAATAATTCGGCAAATCAATATTATAATGCAACATTTATTTCAAATGAAGCAACAN
AGAATGGTGGTGGATCATATTTATTAGATTNTANAATATTTATGCAACAATCAAATTATC
AATCAAATAAAGCAGCAANAGGTGGTGGTATTTTTGCATTGGANACANAGCCATACTTTA
AATNTCAACTTTTCATTANANATGCAAACTTTACAATGAATTCAGCTTCANANAATGGTG
GTGCAATNTATTGTAGTAATGCAACCGCTCGTTTCAATACGANAAATTTATTNGAGGATA
ATAGTGCTACCAATTCAAGTTCTTCAACTGATTATTGNACTTCCTCTTGNGTAACTTCGC
CAGGTGATTGTGGTTGTCCAGGTGGTTGTGGTATTGAATCTGATAATGATAAAGATCCAA
ATACTGATGCTAAAATTGCTGTCGCCATTTTCATTCCAATCNCTGCCANACTTTTAGGNG
TCGTTGGTTTCCTCCTTTGGAGAACTCATGCAAAATCAAGAGGAATGAGAACTAAAACTG
CTGCNCCNTACGATGAAATTAGATTATCTCCATCTTCNCAAGATAATGATGATCAATTAT
AAATTTTTTAAAAAAAACAAAAAAAAAAGTAATAACAGTAAATAAA
Length of connected seq. 1236
Full length Seq ID -
Full length Seq. -
Length of full length seq. -