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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM537
Library AF
(Link to library)
Clone ID AFM537
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM537P
(Link to Original site)
Representative DNA sequence 
>AFM537 (AFM537Q) /CSM/AF/AFM5-B/AFM537Q.Seq.d/
ATTAAATTCCATCATTGCAAATATTTATAAAAAATATATATTAAAAATATAATTTTATAA
TAATAAACAATTATTGTTTTAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAAANTTNNAAAAANNNAAAAAAAANTTTT
TTTTTTTNNNANTTTTTTTTNNAAAAAAAAXXXXXXXXXXGCAGTTAATAAAGGAATGGT
GGTAGTAATGGGTGTTGGTAATTCTGGTGATTTGGGTATGGGAATACCTGCAGATGCAGA
ATACGTTATATCAGTGGGTGCAATTGATTCAAATGGAGAAAGAACTGAATTCTCTTCAAT
TGGGCCCACTGCTGATGGGAGAATAAAACCAGAGGTAATGGCATTGGGACTTGGTAATTT
AGTTGCACATAATTTAAACGATACCACCTATGATCGATTTGATGGCACAAGTTTCTCTTG
CCCATTGGTAGCATCTGGTATAGCATTATTAATGCAGGCTCATCCAAATTGGTCACCAAA
ACAAATTTATGAAGCTGTGATTAGTAGTGCTTCAAAATCTAAATCACCAGATTATTTAAT
GGGTTTTGGTATTTTTAATGCCCTAAAAGCATATGAACACAATCCAACAAATTCATCCGA
TTGTACAATTAATGGAATTGGCTGTTCAAATTCAAATGGTAGATGTAATTTACAATCAAA
GCAATGTCAATGTGAATTACCATTTTATGGACAGTTTTGCCAATACAATAGAATTCCTTG
TGGTCAAAGCATGTTCATTTTTAAATTCNACTTGTGGAANTCCTTCTAATAATTTTAATG
TATCATTTACATGNATTGNACCNNNCATTGGTGATTTT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
*ipslqifikniy*KYNFIIINNYCFKKKKRKKKKKKKKKKKKKKKKKXXXXXKXKKXFF
FXXXFFXKK---

---AVNKGMVVVMGVGNSGDLGMGIPADAEYVISVGAIDSNGERTEFSSIGPTADGRIKP
EVMALGLGNLVAHNLNDTTYDRFDGTSFSCPLVASGIALLMQAHPNWSPKQIYEAVISSA
SKSKSPDYLMGFGIFNALKAYEHNPTNSSDCTINGIGCSNSNGRCNLQSKQCQCELPFYG
QFCQYNRIPCGQSMFIFKFXLWXSF**f*ciiymxxtxhw*f
Translated Amino Acid sequence (All Frames) 
Frame A:
ikfhhckyl*kiyikniil***tiivlkkkkgkkkkkkkkkkkkkkkkxxxxxkxxkkxf
ffxxffxxkk---

---AVNKGMVVVMGVGNSGDLGMGIPADAEYVISVGAIDSNGERTEFSSIGPTADGRIKP
EVMALGLGNLVAHNLNDTTYDRFDGTSFSCPLVASGIALLMQAHPNWSPKQIYEAVISSA
SKSKSPDYLMGFGIFNALKAYEHNPTNSSDCTINGIGCSNSNGRCNLQSKQCQCELPFYG
QFCQYNRIPCGQSMFIFKFXLWXSF**f*ciiymxxtxhw*f

Frame B:
lnsiianiykkyilki*fynnkqllf*kkkkekkkkkkkkkkkkkkkkxxkxxkxxkkxf
ffxxffxkk---

---qlikeww**wvlvilviwvweylqmqntlyqwvqliqmekelnslqlgpllmge*nq
r*whwdlvi*lhii*tippmidlmaqvslahw*hlv*hy*crliqighqnkfmkl*lvvl
qnlnhqii*wvlvflmp*khmntiqqihpivqlmelavqiqmvdviynqsnvnvnyhfmd
sfantieflvvkacsflnstcgxpsnnfnvsftxixpxigdf

Frame C:
*ipslqifikniy*KYNFIIINNYCFKKKKRKKKKKKKKKKKKKKKKKXXXXXKXKKXFF
FXXXFFXKK---

---s**rnggsngcw*fw*fgygntcrcriryisgcn*fkwrkn*ilfnwahc*wenktr
gngigtw*fsct*fkryhl*si*whkfllpigsiwysiinagssklvtktnl*scd**cf
ki*itrlfngfwyf*cpksi*tqsnkfirlyn*wnwlfkfkw*m*ftikamsm*itilwt
vlpiq*nslwskhvhf*ixlvexlliilmyhlhxlxxxlvi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM537 (AFM537Q) /CSM/AF/AFM5-B/AFM537Q.Seq.d/                       1263   0.0
CHK509 (CHK509Q) /CSM/CH/CHK5-A/CHK509Q.Seq.d/                        882   0.0
SSK533 (SSK533Q) /CSM/SS/SSK5-B/SSK533Q.Seq.d/                        652   0.0
SSC191 (SSC191Q) /CSM/SS/SSC1-D/SSC191Q.Seq.d/                        335   7e-91
SSC190 (SSC190Q) /CSM/SS/SSC1-D/SSC190Q.Seq.d/                        331   1e-89
AHC264 (AHC264Q) /CSM/AH/AHC2-C/AHC264Q.Seq.d/                        226   4e-58
SSJ150 (SSJ150Q) /CSM/SS/SSJ1-C/SSJ150Q.Seq.d/                         40   0.056
SSA713 (SSA713Q) /CSM/SS/SSA7-A/SSA713Q.Seq.d/                         40   0.056
VSI863 (VSI863Q) /CSM/VS/VSI8-C/VSI863Q.Seq.d/                         36   0.87
VHH236 (VHH236Q) /CSM/VH/VHH2-B/VHH236Q.Seq.d/                         36   0.87
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347184) Dictyostelium discoideum cDNA clone:dda26i09, 3' ...  1261   0.0    1
(BJ382126) Dictyostelium discoideum cDNA clone:ddc43a03, 3' ...   882   0.0    1
(C94201) Dictyostelium discoideum slug cDNA, clone SSK533.        541   e-180  2
(C92038) Dictyostelium discoideum slug cDNA, clone SSC191.        236   2e-85  2
(BJ349194) Dictyostelium discoideum cDNA clone:dda35o16, 3' ...   119   2e-53  3
(AC170310) Bos taurus clone CH240-141O1, *** SEQUENCING IN P...    50   0.15   1
(AC230435) Bos taurus clone CH240-509F12, WORKING DRAFT SEQU...    48   0.57   1
(ER617905) 1093017355374 Global-Ocean-Sampling_GS-36-01-01-2...    48   0.57   1
(AC126303) Rattus norvegicus clone CH230-208A16, WORKING DRA...    46   2.3    1
(AC111618) Rattus norvegicus clone CH230-122P21, *** SEQUENC...    46   2.3    1
dna update 2009. 4.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000139_262(CP000139|pid:none) Bacteroides vulgatus ATCC 8482, ...    93   1e-17
AE015928_3887(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    89   2e-16
CR626927_3674(CR626927|pid:none) Bacteroides fragilis NCTC 9343,...    89   2e-16
CP000855_1362(CP000855|pid:none) Thermococcus onnurineus NA1, co...    89   2e-16
AP006878_1690(AP006878|pid:none) Thermococcus kodakarensis KOD1 ...    86   2e-15
AM398681_1711(AM398681|pid:none) Flavobacterium psychrophilum JI...    82   2e-14
CP000140_2627(CP000140|pid:none) Parabacteroides distasonis ATCC...    82   3e-14
AY373435_17(AY373435|pid:none) Streptomyces nanchangensis strain...    79   2e-13
CU207366_2197(CU207366|pid:none) Gramella forsetii KT0803 comple...    78   4e-13
CP000667_1446(CP000667|pid:none) Salinispora tropica CNB-440, co...    77   5e-13
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM537 is

5' end seq. ID AFM537F
5' end seq. 
>AFM537F.Seq
ATTAAATTCCATCATTGCAAATATTTATAAAAAATATATATTAAAAATATAATTTTATAA
TAATAAACAATTATTGTTTTAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAAANTTNNAAAAANNNAAAAAAAANTTTT
TTTTTTTNNNANTTTTTTTTNNAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 220
3' end seq. ID AFM537Z
3' end seq. 
>AFM537Z.Seq
XXXXXXXXXXGCAGTTAATAAAGGAATGGTGGTAGTAATGGGTGTTGGTAATTCTGGTGA
TTTGGGTATGGGAATACCTGCAGATGCAGAATACGTTATATCAGTGGGTGCAATTGATTC
AAATGGAGAAAGAACTGAATTCTCTTCAATTGGGCCCACTGCTGATGGGAGAATAAAACC
AGAGGTAATGGCATTGGGACTTGGTAATTTAGTTGCACATAATTTAAACGATACCACCTA
TGATCGATTTGATGGCACAAGTTTCTCTTGCCCATTGGTAGCATCTGGTATAGCATTATT
AATGCAGGCTCATCCAAATTGGTCACCAAAACAAATTTATGAAGCTGTGATTAGTAGTGC
TTCAAAATCTAAATCACCAGATTATTTAATGGGTTTTGGTATTTTTAATGCCCTAAAAGC
ATATGAACACAATCCAACAAATTCATCCGATTGTACAATTAATGGAATTGGCTGTTCAAA
TTCAAATGGTAGATGTAATTTACAATCAAAGCAATGTCAATGTGAATTACCATTTTATGG
ACAGTTTTGCCAATACAATAGAATTCCTTGTGGTCAAAGCATGTTCATTTTTAAATTCNA
CTTGTGGAANTCCTTCTAATAATTTTAATGTATCATTTACATGNATTGNACCNNNCATTG
GTGATTTT
Length of 3' end seq. 668
Connected seq. ID AFM537P
Connected seq. 
>AFM537P.Seq
ATTAAATTCCATCATTGCAAATATTTATAAAAAATATATATTAAAAATATAATTTTATAA
TAATAAACAATTATTGTTTTAAAAAAAAAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAANNNNNAAANTTNNAAAAANNNAAAAAAAANTTTT
TTTTTTTNNNANTTTTTTTTNNAAAAAAAA----------GCAGTTAATAAAGGAATGGT
GGTAGTAATGGGTGTTGGTAATTCTGGTGATTTGGGTATGGGAATACCTGCAGATGCAGA
ATACGTTATATCAGTGGGTGCAATTGATTCAAATGGAGAAAGAACTGAATTCTCTTCAAT
TGGGCCCACTGCTGATGGGAGAATAAAACCAGAGGTAATGGCATTGGGACTTGGTAATTT
AGTTGCACATAATTTAAACGATACCACCTATGATCGATTTGATGGCACAAGTTTCTCTTG
CCCATTGGTAGCATCTGGTATAGCATTATTAATGCAGGCTCATCCAAATTGGTCACCAAA
ACAAATTTATGAAGCTGTGATTAGTAGTGCTTCAAAATCTAAATCACCAGATTATTTAAT
GGGTTTTGGTATTTTTAATGCCCTAAAAGCATATGAACACAATCCAACAAATTCATCCGA
TTGTACAATTAATGGAATTGGCTGTTCAAATTCAAATGGTAGATGTAATTTACAATCAAA
GCAATGTCAATGTGAATTACCATTTTATGGACAGTTTTGCCAATACAATAGAATTCCTTG
TGGTCAAAGCATGTTCATTTTTAAATTCNACTTGTGGAANTCCTTCTAATAATTTTAATG
TATCATTTACATGNATTGNACCNNNCATTGGTGATTTT
Length of connected seq. 868
Full length Seq ID -
Full length Seq. -
Length of full length seq. -