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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM536
Library AF
(Link to library)
Clone ID AFM536
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM536P
(Link to Original site)
Representative DNA sequence 
>AFM536 (AFM536Q) /CSM/AF/AFM5-B/AFM536Q.Seq.d/
ATTTATTTATCTGTTTATTTTTTTATTTATTTATTTATTTTTTATTTATTTATTTATTTA
TTTATTTATTTTAAAAATAAATTTGTTGTAATAATAACAATAATAATTATAATAATAAAA
AATTAAAAAAAAAAXXXXXXXXXXCTTCAATCAATAAAATGAATCCCATTGGATTGGGTG
TTTGTTTTGCACCAAATATNTTACGTTCAGTTAATACCAATCCTTCAAATCCACAATTTC
AAGTTCACATGACAAACATTCAATCCCATTGTAATTTCATAACNCTACTCATTGAAAATC
GTTTGAAAATCTTTAAAGATTTTGCATTATCACCCGTTCAAGGTTCAAATGATGATGAAA
TTTTANAGAATTTAATAATTCAATCNCCTGATGATGAATTATTTGATGAACAACATCAAC
ATGAACAAGAATTAATTGATTNTTCACATGAACATCATCATTCAATTAACAATGGTGATA
ATAATAATAATGTTGATACAAGTAATGTTAATGGTGGTAGTGGTGATGAAAATAATCAAT
CAAATGTTATAAATGATACAGCNCTCTATGATGAATT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
lficlffylfiyflfiylfiylf*k*ICCNNNNNNYNNKKLKKK---

---SINKMNPIGLGVCFAPNXLRSVNTNPSNPQFQVHMTNIQSHCNFITLLIENRLKIFK
DFALSPVQGSNDDEILXNLIIQSPDDELFDEQHQHEQELIDXSHEHHHSINNGDNNNNVD
TSNVNGGSGDENNQSNVINDTALYDE
Translated Amino Acid sequence (All Frames) 
Frame A:
iylsvyffiylfifylfiylfiyfknkfvviitiiiiiikn*kk---

---lqsik*ipldwvfvlhqixyvqlipilqihnfkft*qtfnpivis*xyslkiv*ksl
kilhyhpfkvqmmmkfxri**fnxlmmnylmnninmnkn*lixhmniiiqltmviiiiml
iqvmlmvvvvmkiinqml*miqxsmmn

Frame B:
fiylfiflfiylffiylfiylfilkinll***q**l***kikkk---

---fnq*neshwigclfctkyxtfs*yqsfkstissshdkhsipl*fhnxth*ksfenl*
rfciitrsrfk***nfxefnnsix***ii**ttst*trin*xft*tssfn*qw*****c*
yk*c*ww*w**k*sikcyk*ysxl**i

Frame C:
lficlffylfiyflfiylfiylf*k*ICCNNNNNNYNNKKLKKK---

---SINKMNPIGLGVCFAPNXLRSVNTNPSNPQFQVHMTNIQSHCNFITLLIENRLKIFK
DFALSPVQGSNDDEILXNLIIQSPDDELFDEQHQHEQELIDXSHEHHHSINNGDNNNNVD
TSNVNGGSGDENNQSNVINDTALYDE
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM536 (AFM536Q) /CSM/AF/AFM5-B/AFM536Q.Seq.d/                        823   0.0
AFK874 (AFK874Q) /CSM/AF/AFK8-D/AFK874Q.Seq.d/                        666   0.0
CFD841 (CFD841Q) /CSM/CF/CFD8-B/CFD841Q.Seq.d/                        474   e-133
VHD352 (VHD352Q) /CSM/VH/VHD3-C/VHD352Q.Seq.d/                         46   6e-04
AHJ812 (AHJ812Q) /CSM/AH/AHJ8-A/AHJ812Q.Seq.d/                         42   0.009
VHQ474 (VHQ474Q) /CSM/VH/VHQ4-D/VHQ474Q.Seq.d/                         40   0.036
VHP119 (VHP119Q) /CSM/VH/VHP1-A/VHP119Q.Seq.d/                         40   0.036
VFF559 (VFF559Q) /CSM/VF/VFF5-C/VFF559Q.Seq.d/                         40   0.036
SSI130 (SSI130Q) /CSM/SS/SSI1-B/SSI130Q.Seq.d/                         40   0.036
SSG871 (SSG871Q) /CSM/SS/SSG8-C/SSG871Q.Seq.d/                         40   0.036
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347172) Dictyostelium discoideum cDNA clone:dda26g09, 3' ...   823   0.0    1
(BJ343341) Dictyostelium discoideum cDNA clone:dda22d20, 3' ...   666   0.0    1
(BJ374508) Dictyostelium discoideum cDNA clone:ddc8b12, 3' e...   474   e-129  1
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    46   0.004  7
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    38   0.008  6
(AC166246) Mus musculus BAC clone RP24-80F22 from chromosome...    52   0.024  1
(AC154486) Mus musculus BAC clone RP24-118H13 from chromosom...    52   0.024  1
(EY339097) CAWY9462.rev CAWY Helobdella robusta Subtracted E...    44   0.050  2
(AC152902) Ornithorhynchus anatinus clone OA_Bb-527L1, WORKI...    36   0.058  2
(FP085414) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.060  2
dna update 2009. 4.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK005660_1(AK005660|pid:none) Mus musculus adult male testis cDN...    34   2.3
D17311_1(D17311|pid:none) Halocynthia roretzi mRNA for voltage-g...    33   5.2
BC154705_1(BC154705|pid:none) Xenopus tropicalis hypothetical pr...    33   5.2
AC115604_14(AC115604|pid:none) Dictyostelium discoideum chromoso...    33   6.8
AK132965_1(AK132965|pid:none) Mus musculus adult male testis cDN...    33   6.8
AM910996_474(AM910996|pid:none) Plasmodium knowlesi strain H chr...    32   8.8
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM536 is

5' end seq. ID AFM536F
5' end seq. 
>AFM536F.Seq
ATTTATTTATCTGTTTATTTTTTTATTTATTTATTTATTTTTTATTTATTTATTTATTTA
TTTATTTATTTTAAAAATAAATTTGTTGTAATAATAACAATAATAATTATAATAATAAAA
AATTAAAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 144
3' end seq. ID AFM536Z
3' end seq. 
>AFM536Z.Seq
XXXXXXXXXXCTTCAATCAATAAAATGAATCCCATTGGATTGGGTGTTTGTTTTGCACCA
AATATNTTACGTTCAGTTAATACCAATCCTTCAAATCCACAATTTCAAGTTCACATGACA
AACATTCAATCCCATTGTAATTTCATAACNCTACTCATTGAAAATCGTTTGAAAATCTTT
AAAGATTTTGCATTATCACCCGTTCAAGGTTCAAATGATGATGAAATTTTANAGAATTTA
ATAATTCAATCNCCTGATGATGAATTATTTGATGAACAACATCAACATGAACAAGAATTA
ATTGATTNTTCACATGAACATCATCATTCAATTAACAATGGTGATAATAATAATAATGTT
GATACAAGTAATGTTAATGGTGGTAGTGGTGATGAAAATAATCAATCAAATGTTATAAAT
GATACAGCNCTCTATGATGAATT
Length of 3' end seq. 443
Connected seq. ID AFM536P
Connected seq. 
>AFM536P.Seq
ATTTATTTATCTGTTTATTTTTTTATTTATTTATTTATTTTTTATTTATTTATTTATTTA
TTTATTTATTTTAAAAATAAATTTGTTGTAATAATAACAATAATAATTATAATAATAAAA
AATTAAAAAAAAAA----------CTTCAATCAATAAAATGAATCCCATTGGATTGGGTG
TTTGTTTTGCACCAAATATNTTACGTTCAGTTAATACCAATCCTTCAAATCCACAATTTC
AAGTTCACATGACAAACATTCAATCCCATTGTAATTTCATAACNCTACTCATTGAAAATC
GTTTGAAAATCTTTAAAGATTTTGCATTATCACCCGTTCAAGGTTCAAATGATGATGAAA
TTTTANAGAATTTAATAATTCAATCNCCTGATGATGAATTATTTGATGAACAACATCAAC
ATGAACAAGAATTAATTGATTNTTCACATGAACATCATCATTCAATTAACAATGGTGATA
ATAATAATAATGTTGATACAAGTAATGTTAATGGTGGTAGTGGTGATGAAAATAATCAAT
CAAATGTTATAAATGATACAGCNCTCTATGATGAATT
Length of connected seq. 567
Full length Seq ID -
Full length Seq. -
Length of full length seq. -