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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM535
Library AF
(Link to library)
Clone ID AFM535
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM535P
(Link to Original site)
Representative DNA sequence 
>AFM535 (AFM535Q) /CSM/AF/AFM5-B/AFM535Q.Seq.d/
TACTGGAAAAAAAAACAAAAACAAAAACAAAAAAATATTTAAACCAAAAATTAAAAATAT
AAATAAAAATATAAAAAATAAAAATATAATTGTTGAAAAGAAAAAAAAAAXXXXXXXXXX
ATCCAGATGTTGAAAGAGATTTACTTGATATTTTAATTAAAGAATATGGTACTGATAATG
ATGATAAAATTTTATCAATTTTGGCAACAATTAATGATTTTTTCTTAGCAGGTGTTGATA
CAAGTTCAACTGCTTTAGAATCAATGGTATTGATGTTAACAAATTATCCAGAAATTCAAG
AAAAAGCATTTGATGAAATAAAGACAGTTGTAAATGGTAGAAGTAAAGTTAATTTATCAG
ATAGACAATCAACACCTTATTTAGTTGCTGTAATAAAAGAAACATTAAGATATAAACCAA
TGTCACCATTTGGTTTACCAAGATCTTCATCAAAGGATTGTATGATTGGTGGTCATTTCA
TTCCAAAGAATGCACAAATTTTAATTAATTATCAAGCACTTGGAATGAATGAAGAATATT
ATGAAAATCCAGAACAATTTGATCCATCAAGATTTTTAAAAGTTGAATCAAATGTTGCAT
TTTTACCATTTAGTATTGGTATTAGAAGTTGTGTGGGTCAAAGTTTTGCTCAAGATGAGC
ATATACNNTTGTATTTCAAANATTGCTTTTAAATTTTAACATTANGACATCAATTGACGG
TAAAAAGCATTGATGNAACTGAGGNATACGGCCTCACACTNAAAACNAAAAANAGATTCA
A
sequence update 2009. 4. 3
Translated Amino Acid sequence 
TGKKNKNKNKKIFKPKIKNINKNIKNKNIIVEKKKK---

---PDVERDLLDILIKEYGTDNDDKILSILATINDFFLAGVDTSSTALESMVLMLTNYPE
IQEKAFDEIKTVVNGRSKVNLSDRQSTPYLVAVIKETLRYKPMSPFGLPRSSSKDCMIGG
HFIPKNAQILINYQALGMNEEYYENPEQFDPSRFLKVESNVAFLPFSIGIRSCVGQSFAQ
DEHIXLYFKXCF*iltlxhqltvksidxtexygltlktkxrf
Translated Amino Acid sequence (All Frames) 
Frame A:
ywkkkqkqkqkni*tkn*kyk*kykk*kync*kekk---

---iqmlkeiylif*lknmvlimmikfyqfwqqlmifs*qvliqvqll*nqwy*c*qiiq
kfkkkhlmk*rql*mvevkliyqidnqhli*ll**kkh*dinqchhlvyqdlhqriv*lv
visfqrmhkf*liikhle*mknimkiqnnlihqdf*klnqmlhfyhlvlvlevvwvkvll
kmsiyxcisxiafkf*hxdin*r*kalmxlrxtashxkxkxds

Frame B:
TGKKNKNKNKKIFKPKIKNINKNIKNKNIIVEKKKK---

---src*krft*yfn*riwy*****nfinfgnn**fflsrc*ykfncfringidvnklsr
nsrksi**nkdsckw*k*s*fir*tintlfsccnkrniki*tnvtiwftkifikglydww
sfhskectnfn*lsstwne*ril*ksrti*sikifks*ikccifti*ywy*klcgskfcs
r*aytxvfqxlllnfnixtsidgkkh*xn*girphtxnxkxiq

Frame C:
lekktktktkkylnqklki*iki*kiki*llkrkkk---

---PDVERDLLDILIKEYGTDNDDKILSILATINDFFLAGVDTSSTALESMVLMLTNYPE
IQEKAFDEIKTVVNGRSKVNLSDRQSTPYLVAVIKETLRYKPMSPFGLPRSSSKDCMIGG
HFIPKNAQILINYQALGMNEEYYENPEQFDPSRFLKVESNVAFLPFSIGIRSCVGQSFAQ
DEHIXLYFKXCF*iltlxhqltvksidxtexygltlktkxrf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM535 (AFM535Q) /CSM/AF/AFM5-B/AFM535Q.Seq.d/                       1257   0.0
AFJ334 (AFJ334Q) /CSM/AF/AFJ3-B/AFJ334Q.Seq.d/                       1164   0.0
SSA192 (SSA192Q) /CSM/SS/SSA1-D/SSA192Q.Seq.d/                       1162   0.0
AFO867 (AFO867Q) /CSM/AF/AFO8-C/AFO867Q.Seq.d/                       1162   0.0
AFO667 (AFO667Q) /CSM/AF/AFO6-C/AFO667Q.Seq.d/                       1162   0.0
AFN106 (AFN106Q) /CSM/AF/AFN1-A/AFN106Q.Seq.d/                       1162   0.0
AFL278 (AFL278Q) /CSM/AF/AFL2-D/AFL278Q.Seq.d/                       1162   0.0
AFI735 (AFI735Q) /CSM/AF/AFI7-B/AFI735Q.Seq.d/                       1162   0.0
AFI282 (AFI282Q) /CSM/AF/AFI2-D/AFI282Q.Seq.d/                       1162   0.0
AFH768 (AFH768Q) /CSM/AF/AFH7-C/AFH768Q.Seq.d/                       1162   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347160) Dictyostelium discoideum cDNA clone:dda26e09, 3' ...  1257   0.0    1
(BJ347447) Dictyostelium discoideum cDNA clone:dda27k01, 3' ...  1070   0.0    5
(BJ347278) Dictyostelium discoideum cDNA clone:dda26k14, 3' ...  1070   0.0    4
(BJ346321) Dictyostelium discoideum cDNA clone:dda30f18, 3' ...  1070   0.0    5
(BJ346315) Dictyostelium discoideum cDNA clone:dda30e18, 3' ...  1070   0.0    5
(BJ345611) Dictyostelium discoideum cDNA clone:dda28a11, 3' ...  1070   0.0    5
(BJ345501) Dictyostelium discoideum cDNA clone:dda23k20, 3' ...  1070   0.0    5
(BJ345425) Dictyostelium discoideum cDNA clone:dda23l16, 3' ...  1070   0.0    5
(BJ345206) Dictyostelium discoideum cDNA clone:dda21p21, 3' ...  1070   0.0    5
(BJ345149) Dictyostelium discoideum cDNA clone:dda21c24, 3' ...  1070   0.0    4
dna update 2009. 4.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556M5) RecName: Full=Probable cytochrome P450 508A1;          ...   376   e-103
(Q1ZXF5) RecName: Full=Probable cytochrome P450 508A4;          ...   221   2e-56
(Q1ZXA4) RecName: Full=Probable cytochrome P450 508D1;          ...   162   1e-38
(Q54CS3) RecName: Full=Probable cytochrome P450 508C1;          ...   161   2e-38
AY533546_1(AY533546|pid:none) Chelydra serpentina cytochrome P45...   130   6e-29
(P30437) RecName: Full=Cytochrome P450 17A1;          EC=1.14.99...   127   5e-28
(Q54QD0) RecName: Full=Probable cytochrome P450 517A4;          ...   126   6e-28
AJ277867_1(AJ277867|pid:none) Pimephales promelas mRNA for cytoc...   125   2e-27
AY870249_1(AY870249|pid:none) Acanthopagrus schlegelii P450c17 m...   124   4e-27
S55318(S55318)cytochrome P450 1A, hepatic - Stenotomus chrysops       123   5e-27
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM535 is

5' end seq. ID AFM535F
5' end seq. 
>AFM535F.Seq
TACTGGAAAAAAAAACAAAAACAAAAACAAAAAAATATTTAAACCAAAAATTAAAAATAT
AAATAAAAATATAAAAAATAAAAATATAATTGTTGAAAAGAAAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 120
3' end seq. ID AFM535Z
3' end seq. 
>AFM535Z.Seq
XXXXXXXXXXATCCAGATGTTGAAAGAGATTTACTTGATATTTTAATTAAAGAATATGGT
ACTGATAATGATGATAAAATTTTATCAATTTTGGCAACAATTAATGATTTTTTCTTAGCA
GGTGTTGATACAAGTTCAACTGCTTTAGAATCAATGGTATTGATGTTAACAAATTATCCA
GAAATTCAAGAAAAAGCATTTGATGAAATAAAGACAGTTGTAAATGGTAGAAGTAAAGTT
AATTTATCAGATAGACAATCAACACCTTATTTAGTTGCTGTAATAAAAGAAACATTAAGA
TATAAACCAATGTCACCATTTGGTTTACCAAGATCTTCATCAAAGGATTGTATGATTGGT
GGTCATTTCATTCCAAAGAATGCACAAATTTTAATTAATTATCAAGCACTTGGAATGAAT
GAAGAATATTATGAAAATCCAGAACAATTTGATCCATCAAGATTTTTAAAAGTTGAATCA
AATGTTGCATTTTTACCATTTAGTATTGGTATTAGAAGTTGTGTGGGTCAAAGTTTTGCT
CAAGATGAGCATATACNNTTGTATTTCAAANATTGCTTTTAAATTTTAACATTANGACAT
CAATTGACGGTAAAAAGCATTGATGNAACTGAGGNATACGGCCTCACACTNAAAACNAAA
AANAGATTCAA
Length of 3' end seq. 671
Connected seq. ID AFM535P
Connected seq. 
>AFM535P.Seq
TACTGGAAAAAAAAACAAAAACAAAAACAAAAAAATATTTAAACCAAAAATTAAAAATAT
AAATAAAAATATAAAAAATAAAAATATAATTGTTGAAAAGAAAAAAAAAA----------
ATCCAGATGTTGAAAGAGATTTACTTGATATTTTAATTAAAGAATATGGTACTGATAATG
ATGATAAAATTTTATCAATTTTGGCAACAATTAATGATTTTTTCTTAGCAGGTGTTGATA
CAAGTTCAACTGCTTTAGAATCAATGGTATTGATGTTAACAAATTATCCAGAAATTCAAG
AAAAAGCATTTGATGAAATAAAGACAGTTGTAAATGGTAGAAGTAAAGTTAATTTATCAG
ATAGACAATCAACACCTTATTTAGTTGCTGTAATAAAAGAAACATTAAGATATAAACCAA
TGTCACCATTTGGTTTACCAAGATCTTCATCAAAGGATTGTATGATTGGTGGTCATTTCA
TTCCAAAGAATGCACAAATTTTAATTAATTATCAAGCACTTGGAATGAATGAAGAATATT
ATGAAAATCCAGAACAATTTGATCCATCAAGATTTTTAAAAGTTGAATCAAATGTTGCAT
TTTTACCATTTAGTATTGGTATTAGAAGTTGTGTGGGTCAAAGTTTTGCTCAAGATGAGC
ATATACNNTTGTATTTCAAANATTGCTTTTAAATTTTAACATTANGACATCAATTGACGG
TAAAAAGCATTGATGNAACTGAGGNATACGGCCTCACACTNAAAACNAAAAANAGATTCA
A
Length of connected seq. 771
Full length Seq ID -
Full length Seq. -
Length of full length seq. -