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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFG375
Library VF
(Link to library)
Clone ID VFG375
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15827-1
Original site URL
Representative seq. ID VFG375P
(Link to Original site)
Representative DNA sequence 
>VFG375 (VFG375Q) /CSM/VF/VFG3-D/VFG375Q.Seq.d/
ATAGAATTTTATAAAACCGATTGTTATTATTTGTTTTTCAAATTTCTTATCACAAAATCT
AATTTTTATTTACTCATTTATTTTCTTCCATAAAATCAAATAGTAATAATTATTATAATC
AAAAAACAAAACAAAAAAAAAGGTTTTAAATATTATTTAAAATAAGAAATTTCAACAATG
ACAACTGATAAAAAATCAAAATCAAAATCAAGTGAAAAATCAACACANGAAGTTGANCAA
GTTATTAAACCAGAAAAAACCCCAATTTTAGATACTAGTAAANGGCCATTATTATTAAAA
AATTATGATCAATTATCAGTTAGAACTGGTCATTATACACCAATTCCAAANGGTCATTCA
CCATTAAAGAGACCAATCAAAGAGTNTGTTAAATATGGTATTATCAATTNGGATAAACCA
TCAAATCCATCATCACATGAAGTTGTAGCATGGATTCGTACCATTCTTCGNGTAACCAAA
ACTGGTCXXXXXXXXXXCAAAGACGAATCTTACTTACGTCGTGTCATTCAACCATTGGAA
GCAATTCTCACCAATTACAAGAGAATCGTCGTTAAAGACTCTGCAATCAATGCCATCTGT
TATGGTGCTAAACTCATGATTCCAGGTCTCTTACGTTATGAACAAGACATTGAATCAAAC
GAAGAAGTCGTTCTTATCACCACCAAAGGTGAAGCCATCGCTATTGGTATCGCTCAAATG
ACCACCGCTTCAATGGCCACTTGTGATCATGGTGTCGTTGCCACAATCAAAAGAGTTATC
ATGGATAGAGATGTCTATCCAGTTAGATGGGGTCTTGGTCCAAAAGCAAAGGTCAAGAAG
GAAATGATCAAAGATGGTAAATTAGACAAATTTGGTAAACCAAATGAAAAAACTCCATCA
GATTGGACCAACACTTACACCTATTACACTGGTCAAGTTGCCACTACCACCACCACCTCC
CCAGTCGAATCAATGAATGTTGATACTCCAAAGAAAGCAACTGCCTCTGTCGCCGTTAAA
GCTAAGTTAATCATNCTAAGNATAAAAACCAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iefyktdcyylffkflitksnfylliyflp*nqiviiiiikkqnkkkgfkyylk*EISTM
TTDKKSKSKSSEKSTXEVXQVIKPEKTPILDTSKXPLLLKNYDQLSVRTGHYTPIPXGHS
PLKRPIKEXVKYGIINXDKPSNPSSHEVVAWIRTILRVTKTG---

---KDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEV
VLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMI
KDGKLDKFGKPNEKTPSDWTNTYTYYTGQVATTTTTSPVESMNVDTPKKATASVAVKAKL
IXLXIKT
Translated Amino Acid sequence (All Frames) 
Frame A:
iefyktdcyylffkflitksnfylliyflp*nqiviiiiikkqnkkkgfkyylk*EISTM
TTDKKSKSKSSEKSTXEVXQVIKPEKTPILDTSKXPLLLKNYDQLSVRTGHYTPIPXGHS
PLKRPIKEXVKYGIINXDKPSNPSSHEVVAWIRTILRVTKTG---

---qrrilltschstigsnshqlqenrr*rlcnqchllwc*thdsrsltl*trh*ikrrs
rsyhhqr*shrywyrsndhrfnghl*swcrchnqksyhg*rclss*mgswskskgqegnd
qrw*irqiw*tk*knsirldqhlhllhwsschyhhhlpsrinec*yskesnclcrr*s*v
nhxkxknq

Frame B:
*nfikpiviicfsnflsqnlifiysfiffhkik***ll*sknktkkkvlnii*nkkfqq*
qliknqnqnqvknqhxklxkllnqkkpqf*ilvxghyy*kiminyqlelviihqfqxvih
h*rdqsksxlnmvlsixinhqihhhmkl*hgfvpffx*pklv---

---KDESYLRRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEV
VLITTKGEAIAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMI
KDGKLDKFGKPNEKTPSDWTNTYTYYTGQVATTTTTSPVESMNVDTPKKATASVAVKAKL
IXLXIKT

Frame C:
ril*nrlllfvfqisyhki*flfthlfssiksnsnnyynqktkqkkrf*ilfkirnfnnd
n**kikikik*kintxs*xsy*trknpnfry**xaiiikkl*siis*nwslytnskxsft
iketnqrvc*iwyyqxg*tiksiit*scsmdsyhssxnqnw---

---ktnltyvvsfnhwkqfspitresslktlqsmpsvmvlns*fqvsyvmnktlnqtkks
flsppkvkpsllvslk*pplqwplvimvslpqskelswiemsiqldgvlvqkqrsrrk*s
kmvn*tnlvnqmkklhqigptltpitlvklplpppppqsnq*mlilqrkqlplsplkls*
sx*x*kp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG375 (VFG375Q) /CSM/VF/VFG3-D/VFG375Q.Seq.d/                       1536   0.0
VFB588 (VFB588Q) /CSM/VF/VFB5-D/VFB588Q.Seq.d/                       1047   0.0
VFG107 (VFG107Q) /CSM/VF/VFG1-A/VFG107Q.Seq.d/                       1043   0.0
SLG818 (SLG818Q) /CSM/SL/SLG8-A/SLG818Q.Seq.d/                       1043   0.0
CHB777 (CHB777Q) /CSM/CH/CHB7-D/CHB777Q.Seq.d/                       1043   0.0
VFD746 (VFD746Q) /CSM/VF/VFD7-B/VFD746Q.Seq.d/                       1041   0.0
SLA614 (SLA614Q) /CSM/SL/SLA6-A/SLA614Q.Seq.d/                       1035   0.0
VFD801 (VFD801Q) /CSM/VF/VFD8-A/VFD801Q.Seq.d/                       1027   0.0
VFC387 (VFC387Q) /CSM/VF/VFC3-D/VFC387Q.Seq.d/                       1015   0.0
VFE566 (VFE566Q) /CSM/VF/VFE5-C/VFE566Q.Seq.d/                        991   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AX489105|AX489105.1 Sequence 6405 from Patent WO02053728.         86  6e-39  5
U59149|U59149.1 Candida albicans nucleolar protein CaCbf5p (CaCBF5) gene, complete cds.    86  2e-38  5
BQ739552|BQ739552.1 PfESToab47d06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:NO50_CAEEL O17919 PUTATIVE NUCLEOLAR PROTEIN K01G5.5. [1] ;, mRNA sequence.    66  2e-12  2
BI814452|BI814452.1 PfESToaa22h02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:CBF5_SCHPO O14007 CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 ;, mRNA sequence.    66  2e-12  2
BU498441|BU498441.1 PfESToab97c06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:DKC1_RAT P40615 DYSKERIN ;, mRNA sequence.    66  3e-12  2
AZ927873|AZ927873.1 476.dis09b05.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dis09b05.s1, DNA sequence.    72  4e-11  2
AZ930830|AZ930830.1 474.dhz59b02.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz59b02.s1, DNA sequence.    72  5e-10  2
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    66  1e-09  5
BQ989186|BQ989186.1 QGF16P20.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGF16P20, mRNA sequence.    64  2e-09  2
AX594914|AX594914.1 Sequence 568 from Patent EP1258494.           40  6e-09  5
dna update 2003. 9.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9LD90) RecName: Full=H/ACA ribonucleoprotein complex subunit 4...   224   5e-57
(O14007) RecName: Full=H/ACA ribonucleoprotein complex subunit 4...   220   7e-56
AK102460_1(AK102460|pid:none) Oryza sativa Japonica Group cDNA c...   217   6e-55
AM989984_18(AM989984|pid:none) Zygosaccharomyces rouxii strain C...   213   1e-53
BT065061_1(BT065061|pid:none) Zea mays full-length cDNA clone ZM...   211   3e-53
CU928180_506(CU928180|pid:none) Kluyveromyces thermotolerans str...   211   3e-53
(O43102) RecName: Full=Centromere/microtubule-binding protein cb...   210   6e-53
(O13473) RecName: Full=Centromere/microtubule-binding protein CB...   209   1e-52
AM920435_75(AM920435|pid:none) Penicillium chrysogenum Wisconsin...   208   3e-52
BC123284_1(BC123284|pid:none) Xenopus laevis hypothetical protei...   206   8e-52
protein update 2009. 6.20
PSORT 

 psg: 0.42  gvh: 0.28  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for VFG375 is cyt
5' end seq. ID VFG375F
5' end seq. 
>VFG375F.Seq
ATAGAATTTTATAAAACCGATTGTTATTATTTGTTTTTCAAATTTCTTATCACAAAATCT
AATTTTTATTTACTCATTTATTTTCTTCCATAAAATCAAATAGTAATAATTATTATAATC
AAAAAACAAAACAAAAAAAAAGGTTTTAAATATTATTTAAAATAAGAAATTTCAACAATG
ACAACTGATAAAAAATCAAAATCAAAATCAAGTGAAAAATCAACACANGAAGTTGANCAA
GTTATTAAACCAGAAAAAACCCCAATTTTAGATACTAGTAAANGGCCATTATTATTAAAA
AATTATGATCAATTATCAGTTAGAACTGGTCATTATACACCAATTCCAAANGGTCATTCA
CCATTAAAGAGACCAATCAAAGAGTNTGTTAAATATGGTATTATCAATTNGGATAAACCA
TCAAATCCATCATCACATGAAGTTGTAGCATGGATTCGTACCATTCTTCGNGTAACCAAA
ACTGGTC----------
Length of 5' end seq. 487
3' end seq. ID VFG375Z
3' end seq. 
>VFG375Z.Seq
----------CAAAGACGAATCTTACTTACGTCGTGTCATTCAACCATTGGAAGCAATTC
TCACCAATTACAAGAGAATCGTCGTTAAAGACTCTGCAATCAATGCCATCTGTTATGGTG
CTAAACTCATGATTCCAGGTCTCTTACGTTATGAACAAGACATTGAATCAAACGAAGAAG
TCGTTCTTATCACCACCAAAGGTGAAGCCATCGCTATTGGTATCGCTCAAATGACCACCG
CTTCAATGGCCACTTGTGATCATGGTGTCGTTGCCACAATCAAAAGAGTTATCATGGATA
GAGATGTCTATCCAGTTAGATGGGGTCTTGGTCCAAAAGCAAAGGTCAAGAAGGAAATGA
TCAAAGATGGTAAATTAGACAAATTTGGTAAACCAAATGAAAAAACTCCATCAGATTGGA
CCAACACTTACACCTATTACACTGGTCAAGTTGCCACTACCACCACCACCTCCCCAGTCG
AATCAATGAATGTTGATACTCCAAAGAAAGCAACTGCCTCTGTCGCCGTTAAAGCTAAGT
TAATCATNCTAAGNATAAAAACCAG
Length of 3' end seq. 555
Connected seq. ID VFG375P
Connected seq. 
>VFG375P.Seq
ATAGAATTTTATAAAACCGATTGTTATTATTTGTTTTTCAAATTTCTTATCACAAAATCT
AATTTTTATTTACTCATTTATTTTCTTCCATAAAATCAAATAGTAATAATTATTATAATC
AAAAAACAAAACAAAAAAAAAGGTTTTAAATATTATTTAAAATAAGAAATTTCAACAATG
ACAACTGATAAAAAATCAAAATCAAAATCAAGTGAAAAATCAACACANGAAGTTGANCAA
GTTATTAAACCAGAAAAAACCCCAATTTTAGATACTAGTAAANGGCCATTATTATTAAAA
AATTATGATCAATTATCAGTTAGAACTGGTCATTATACACCAATTCCAAANGGTCATTCA
CCATTAAAGAGACCAATCAAAGAGTNTGTTAAATATGGTATTATCAATTNGGATAAACCA
TCAAATCCATCATCACATGAAGTTGTAGCATGGATTCGTACCATTCTTCGNGTAACCAAA
ACTGGTC----------CAAAGACGAATCTTACTTACGTCGTGTCATTCAACCATTGGAA
GCAATTCTCACCAATTACAAGAGAATCGTCGTTAAAGACTCTGCAATCAATGCCATCTGT
TATGGTGCTAAACTCATGATTCCAGGTCTCTTACGTTATGAACAAGACATTGAATCAAAC
GAAGAAGTCGTTCTTATCACCACCAAAGGTGAAGCCATCGCTATTGGTATCGCTCAAATG
ACCACCGCTTCAATGGCCACTTGTGATCATGGTGTCGTTGCCACAATCAAAAGAGTTATC
ATGGATAGAGATGTCTATCCAGTTAGATGGGGTCTTGGTCCAAAAGCAAAGGTCAAGAAG
GAAATGATCAAAGATGGTAAATTAGACAAATTTGGTAAACCAAATGAAAAAACTCCATCA
GATTGGACCAACACTTACACCTATTACACTGGTCAAGTTGCCACTACCACCACCACCTCC
CCAGTCGAATCAATGAATGTTGATACTCCAAAGAAAGCAACTGCCTCTGTCGCCGTTAAA
GCTAAGTTAATCATNCTAAGNATAAAAACCAG
Length of connected seq. 1042
Full length Seq ID -
Full length Seq. -
Length of full length seq. -