>VFG368 (VFG368Q) /CSM/VF/VFG3-C/VFG368Q.Seq.d/
GTCGTTCTCACACTTCAATAAACTGATATTGTTGTACAACAATTTACAATTTTATTTATT
TTTTTAAAAAAAAAAAAAAAAAAAAAAATTTTCCNCCCNAAAAAAAAXXXXXXXXXXAGG
CAACAAGTTTAATTGATAATGTCGTTATCAATAATGGTCATCCATTTGTAAAAACTTTGA
ATGTTGGCGATAATTTTTACTACACTGGCGTTACAGTCTCCAATTGCCAATTCTCAAAAT
TTATACAACACGAAAATAACAAAATCAATGCTCCAAGAGAATCTGCAATTCTACATATCT
CAACTATGTATTTAATTAATAACATTATCNCCTCAAACTACAATGATCCAACAAATTCAT
TTTTTTCATTCCAAAATTTCATTGGTGCGTCTTATACCTTGGATTTTAATACTATATCTT
CATCAGGTAACATCGTTCTCGGTCAAAACAAATCTTTTATTTCTAATCAAAATTCAAATT
CCACGAGCTCTTTCTCAGAACCTCCAAGTGATTTCCAAATAGGGTTTAACACTGAAAATT
CACACACTGATATATTATATTCAAGCGTTTTATCAACCATTCCTTTTGTTGGATCCAATT
CAATCTTTACTTTT

vvltlq*TDIVVQQFTILFIFLKKKKKKKIFXPKK---

---ATSLIDNVVINNGHPFVKTLNVGDNFYYTGVTVSNCQFSKFIQHENNKINAPRESAI
LHISTMYLINNIIXSNYNDPTNSFFSFQNFIGASYTLDFNTISSSGNIVLGQNKSFISNQ
NSNSTSSFSEPPSDFQIGFNTENSHTDILYSSVLSTIPFVGSNSIFTF

Frame A:
vvltlq*TDIVVQQFTILFIFLKKKKKKKIFXPKK---

---rqqv*limslsimvihl*kl*mlaiifttlalqspiansqnlyntkitksmlqenlq
fyisqlci*litlspqttmiqqihffhskislvrlipwililylhqvtsfsvktnllfli
kiqipralsqnlqvisk*gltlkihtliyyiqafyqpfllldpiqsll

Frame B:
sfshfnklillynnlqfylff*kkkkkkkfsxxkk---

---gnkfn**cryq*wssicknfecwr*fllhwryslqlpilkiyttrk*qnqcskricn
stylnyvfn**hyxlklq*snkfiffipkfhwcvlylgf*yyifir*hrsrskqifyf*s
kfkfhelflrtsk*fpnrv*h*kfth*yiifkrfinhsfcwiqfnlyf

Frame C:
rshtsin*yccttiynfiyffkkkkkkknfppxkk---

---ATSLIDNVVINNGHPFVKTLNVGDNFYYTGVTVSNCQFSKFIQHENNKINAPRESAI
LHISTMYLINNIIXSNYNDPTNSFFSFQNFIGASYTLDFNTISSSGNIVLGQNKSFISNQ
NSNSTSSFSEPPSDFQIGFNTENSHTDILYSSVLSTIPFVGSNSIFTF

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG368 (VFG368Q) /CSM/VF/VFG3-C/VFG368Q.Seq.d/                        938   0.0
VFD820 (VFD820Q) /CSM/VF/VFD8-A/VFD820Q.Seq.d/                        930   0.0
VFC639 (VFC639Q) /CSM/VF/VFC6-B/VFC639Q.Seq.d/                        912   0.0
SFE589 (SFE589Q) /CSM/SF/SFE5-D/SFE589Q.Seq.d/                        902   0.0
VFB351 (VFB351Q) /CSM/VF/VFB3-C/VFB351Q.Seq.d/                        795   0.0
VFK894 (VFK894Q) /CSM/VF/VFK8-D/VFK894Q.Seq.d/                        464   e-130
SFJ884 (SFJ884Q) /CSM/SF/SFJ8-D/SFJ884Q.Seq.d/                        246   3e-64
SLJ337 (SLJ337Q) /CSM/SL/SLJ3-B/SLJ337Q.Seq.d/                        184   1e-45
VFN661 (VFN661Q) /CSM/VF/VFN6-C/VFN661Q.Seq.d/                        129   5e-29
VFI230 (VFI230Q) /CSM/VF/VFI2-B/VFI230Q.Seq.d/                        129   5e-29

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF147054|AF147054.1 Paratrechina sp. ACDN cytochrome c oxidase subunit 1 (COI) gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome c oxidase subunit 2 (COII) gene, partial cds; mitochondrial genes for mitochondrial products.    44  0.011  2
AF275229|AF275229.1 Anoecia fulviabdominalis 12S small subunit ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products.    36  0.012  3
CA914360|CA914360.1 PCSC19958 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Chalcone-flavonone isomerase, mRNA sequence.    42  0.021  2
CC794837|CC794837.1 SALK_056909.54.75.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_056909.54.75.x, genomic survey sequence.    32  0.16  3
AL163572|AL163572.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22N19 (ESSA  project).    36  0.36  4
AP006142|AP006142.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 2, clone:LjT08A24, TM0250.    40  0.39  3
AC091861|AC091861.3 Homo sapiens chromosome 5 clone CTD-2339B8, complete sequence.    46  0.51  1
AL132654|AL132654.15 Human DNA sequence from clone RP3-450M14 on chromosome 20 Contains a novel pseudogene, a gene encoding a novel protein similar to  KIAA0249 and Yeast SMP2, ESTs and GSSs.    46  0.51  1
AC099408|AC099408.2 Pan troglodytes clone RP43-44D23, WORKING DRAFT SEQUENCE, 7 ordered pieces.    46  0.51  1
AC097009|AC097009.2 Pan troglodytes clone RP43-169E8, WORKING DRAFT SEQUENCE, 4 ordered pieces.    46  0.51  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ168618_2(DQ168618|pid:none) Oleria aquata cytochrome oxidase s...    35   1.3
FJ468729_2(FJ468729|pid:none) Napeogenes stella opacella voucher...    34   3.7
FJ468738_2(FJ468738|pid:none) Napeogenes duessa n. ssp. 1 ME-200...    34   3.7
FJ468737_2(FJ468737|pid:none) Napeogenes duessa jamariensis vouc...    34   3.7
FJ468790_2(FJ468790|pid:none) Napeogenes stella ssp. ME-2009 vou...    34   3.7
FJ468736_2(FJ468736|pid:none) Napeogenes duessa incas voucher 05...    34   3.7
EU069085_2(EU069085|pid:none) Napeogenes duessa incas isolate 5-...    34   3.7
DQ157521_2(DQ157521|pid:none) Napeogenes duessa voucher E-46-2 c...    34   3.7
FJ468735_2(FJ468735|pid:none) Napeogenes duessa incas voucher 05...    34   3.7
AY521251_8(AY521251|pid:none) Aleurodicus dugesii mitochondrion,...    33   4.9

 psg: 0.75  gvh: 0.31  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.16  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal

>> prediction for VFG368 is nuc

>VFG368F.Seq
GTCGTTCTCACACTTCAATAAACTGATATTGTTGTACAACAATTTACAATTTTATTTATT
TTTTTAAAAAAAAAAAAAAAAAAAAAAATTTTCCNCCCNAAAAAAAA----------

>VFG368Z.Seq
----------AGGCAACAAGTTTAATTGATAATGTCGTTATCAATAATGGTCATCCATTT
GTAAAAACTTTGAATGTTGGCGATAATTTTTACTACACTGGCGTTACAGTCTCCAATTGC
CAATTCTCAAAATTTATACAACACGAAAATAACAAAATCAATGCTCCAAGAGAATCTGCA
ATTCTACATATCTCAACTATGTATTTAATTAATAACATTATCNCCTCAAACTACAATGAT
CCAACAAATTCATTTTTTTCATTCCAAAATTTCATTGGTGCGTCTTATACCTTGGATTTT
AATACTATATCTTCATCAGGTAACATCGTTCTCGGTCAAAACAAATCTTTTATTTCTAAT
CAAAATTCAAATTCCACGAGCTCTTTCTCAGAACCTCCAAGTGATTTCCAAATAGGGTTT
AACACTGAAAATTCACACACTGATATATTATATTCAAGCGTTTTATCAACCATTCCTTTT
GTTGGATCCAATTCAATCTTTACTTTT

>VFG368P.Seq
GTCGTTCTCACACTTCAATAAACTGATATTGTTGTACAACAATTTACAATTTTATTTATT
TTTTTAAAAAAAAAAAAAAAAAAAAAAATTTTCCNCCCNAAAAAAAA----------AGG
CAACAAGTTTAATTGATAATGTCGTTATCAATAATGGTCATCCATTTGTAAAAACTTTGA
ATGTTGGCGATAATTTTTACTACACTGGCGTTACAGTCTCCAATTGCCAATTCTCAAAAT
TTATACAACACGAAAATAACAAAATCAATGCTCCAAGAGAATCTGCAATTCTACATATCT
CAACTATGTATTTAATTAATAACATTATCNCCTCAAACTACAATGATCCAACAAATTCAT
TTTTTTCATTCCAAAATTTCATTGGTGCGTCTTATACCTTGGATTTTAATACTATATCTT
CATCAGGTAACATCGTTCTCGGTCAAAACAAATCTTTTATTTCTAATCAAAATTCAAATT
CCACGAGCTCTTTCTCAGAACCTCCAAGTGATTTCCAAATAGGGTTTAACACTGAAAATT
CACACACTGATATATTATATTCAAGCGTTTTATCAACCATTCCTTTTGTTGGATCCAATT
CAATCTTTACTTTT