>VFG276 (VFG276Q) /CSM/VF/VFG2-D/VFG276Q.Seq.d/
XXXXXXXXXXCGTGGTCATTTTGTTCTCTTTGATTTCGCTTATCAAGGTTTCGCATCTGG
TAGCCCAGAAAAGGATGCTGCCGCTGTCCGTATGTTTGTCGAAGATGGTCGCAACATTGC
TCTCTGTCAATCATTTGCTAAAAACTTTGGTCTCTATGGTGAACGTATTGGTGCTTTCTC
CATTCTCACTGAAACTTCAGATCAAGCTCTCAACGTTGAATCTCAATTAAAGATCTTAAT
TCGTCCAATGTACTCTAATCCACCAGTTTATGGAGCTCGTCTCGTTCAAGCTATCCTCAA
AGATAAAGAATTAACCAATGAATGGAGATCCGAAGTTAAAGGTATGGCCGATCGTATCAT
TAACATGAGAGAACAATTAGTCAAATACCTTAAAAAACATGGTTCAACTCGTGATTGGTC
TCATATTACCACTCAAATTGGTATGTTTTGTTTCACTGGTTTAACTCCAGAACAAGTTGA
TCGTTTGGCAAATGAATATCACATCTANTTNACTCGNAATGGTCGTATCTCAAGTGCNGG
TATGTAATNCNACAAATGT

---GHFVLFDFAYQGFASGSPEKDAAAVRMFVEDGRNIALCQSFAKNFGLYGERIGAFSI
LTETSDQALNVESQLKILIRPMYSNPPVYGARLVQAILKDKELTNEWRSEVKGMADRIIN
MREQLVKYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIXXTRNGRISSAGM
*xxkc

Frame A:
---vvilfslislikvshlvaqkrmlplsvclskmvatllsvnhllktlvsmvnvlvlsp
fslklqiklstlnln*rs*fvqctlihqfmelvsfklsskikn*pmngdpklkvwpivsl
t*enn*sntlknmvqlviglilplklvcfvslv*lqnklivwqmnitsxxlxmvvsqvxv
cnxtn


Frame B:
---wsfcsl*frlsrfriw*prkgccrcpyvcrrwsqhcslsiic*klwslw*tywcflh
sh*nfrsssqr*isikdlnssnvl*stslwsssrssypqr*rinq*meirs*rygrsyh*
hertisqip*ktwfns*lvsyyhsnwyvlfhwfnsrts*sfgk*ishlxxsxwsylkcxy
vxxqm


Frame C:
---GHFVLFDFAYQGFASGSPEKDAAAVRMFVEDGRNIALCQSFAKNFGLYGERIGAFSI
LTETSDQALNVESQLKILIRPMYSNPPVYGARLVQAILKDKELTNEWRSEVKGMADRIIN
MREQLVKYLKKHGSTRDWSHITTQIGMFCFTGLTPEQVDRLANEYHIXXTRNGRISSAGM
*xxkc

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG276 (VFG276Q) /CSM/VF/VFG2-D/VFG276Q.Seq.d/                       1053   0.0
VSI466 (VSI466Q) /CSM/VS/VSI4-C/VSI466Q.Seq.d/                       1021   0.0
VFJ338 (VFJ338Q) /CSM/VF/VFJ3-B/VFJ338Q.Seq.d/                       1021   0.0
VFE522 (VFE522Q) /CSM/VF/VFE5-A/VFE522Q.Seq.d/                       1021   0.0
SLE757 (SLE757Q) /CSM/SL/SLE7-C/SLE757Q.Seq.d/                       1021   0.0
SLB133 (SLB133Q) /CSM/SL/SLB1-B/SLB133Q.Seq.d/                       1021   0.0
AFM850 (AFM850Q) /CSM/AF/AFM8-C/AFM850Q.Seq.d/                       1021   0.0
AFM514 (AFM514Q) /CSM/AF/AFM5-A/AFM514Q.Seq.d/                       1021   0.0
AFM425 (AFM425Q) /CSM/AF/AFM4-B/AFM425Q.Seq.d/                       1017   0.0
VFL403 (VFL403Q) /CSM/VF/VFL4-A/VFL403Q.Seq.d/                       1013   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AL034352|AL034352.1 S.pombe chromosome II cosmid c725.            50  4e-08  2
CB407107|CB407107.1 OSTR084D6_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    62  1e-07  2
AF003140|AF003140.2 Caenorhabditis elegans cosmid C44E4.    62  7e-06  2
C34326|C34326.1 C.elegans cDNA clone yk399d7 : 3' end, single read.    62  8e-06  1
AC006710|AC006710.1 Caenorhabditis elegans clone Y119C1AA, WORKING DRAFT SEQUENCE, 1 unordered pieces.    62  3e-05  2
BJ134396|BJ134396.1 Caenorhabditis elegans cDNA clone:yk1088b01 : 3' end, single read.    52  4e-05  2
AU203763|AU203763.1 Caenorhabditis elegans cDNA clone:yk825a05 : 5' end, single read.    44  9e-05  3
BX562895|BX562895.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse63c10_q1c.    40  9e-05  3
BJ110771|BJ110771.1 Caenorhabditis elegans cDNA clone:yk1134g06 : 5' end, single read.    44  1e-04  3
BJ149805|BJ149805.1 Caenorhabditis elegans cDNA clone:yk1278g02 : 3' end, single read.    44  1e-04  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55F21) RecName: Full=Aspartate aminotransferase, mitochondrial...   349   2e-95
(Q4R559) RecName: Full=Aspartate aminotransferase, mitochondrial...   236   4e-61
(P00505) RecName: Full=Aspartate aminotransferase, mitochondrial...   235   5e-61
AK098313_1(AK098313|pid:none) Homo sapiens cDNA FLJ40994 fis, cl...   235   5e-61
CR860094_1(CR860094|pid:none) Pongo abelii mRNA; cDNA DKFZp469B0...   234   1e-60
BC054684_1(BC054684|pid:none) Danio rerio glutamic-oxaloacetic t...   231   1e-59
AK290847_1(AK290847|pid:none) Homo sapiens cDNA FLJ78439 complet...   231   1e-59
D25323_1(D25323|pid:none) Panicum miliaceum gene for mitochondri...   230   2e-59
AM270079_80(AM270079|pid:none) Aspergillus niger contig An04c018...   230   2e-59
U82470_1(U82470|pid:none) Mus musculus aspartate aminotransferas...   230   2e-59

 psg: 0.75  gvh: 0.56  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for VFG276 is nuc

>VFG276Z.Seq
----------CGTGGTCATTTTGTTCTCTTTGATTTCGCTTATCAAGGTTTCGCATCTGG
TAGCCCAGAAAAGGATGCTGCCGCTGTCCGTATGTTTGTCGAAGATGGTCGCAACATTGC
TCTCTGTCAATCATTTGCTAAAAACTTTGGTCTCTATGGTGAACGTATTGGTGCTTTCTC
CATTCTCACTGAAACTTCAGATCAAGCTCTCAACGTTGAATCTCAATTAAAGATCTTAAT
TCGTCCAATGTACTCTAATCCACCAGTTTATGGAGCTCGTCTCGTTCAAGCTATCCTCAA
AGATAAAGAATTAACCAATGAATGGAGATCCGAAGTTAAAGGTATGGCCGATCGTATCAT
TAACATGAGAGAACAATTAGTCAAATACCTTAAAAAACATGGTTCAACTCGTGATTGGTC
TCATATTACCACTCAAATTGGTATGTTTTGTTTCACTGGTTTAACTCCAGAACAAGTTGA
TCGTTTGGCAAATGAATATCACATCTANTTNACTCGNAATGGTCGTATCTCAAGTGCNGG
TATGTAATNCNACAAATGT