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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFG265
Library VF
(Link to library)
Clone ID VFG265
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15354-1
Original site URL
Representative seq. ID VFG265Z
(Link to Original site)
Representative DNA sequence 
>VFG265 (VFG265Q) /CSM/VF/VFG2-C/VFG265Q.Seq.d/
XXXXXXXXXXCTCTGAAATGATTGCAGAGAAATATAATTTANCAAGAGATGAAATCGATA
AATTCTCTGGTAGATCTCACGAATTAGCAGATAACGCAACAAAGAAAGGCTATTTCAAAG
ACCAAATCATCCCAGTCACCCTTCAAGATGGTAAAGTTGTTGATAAAGATGAAGGTATTC
GTGTTCCAGTAGATTATAAGAAAATGTCAACTTTAAAAACCCCATTCAAGCCAAATGGTA
AGATTAGTGCTGCAAATGCTTCACAAATCAGCGATGGTGCTTCTGCTGTCCTATTGGTTA
GTGGTCGTTTAGTTAAGAAATTAGGATTAAAACCACGTGCTCGTATTGTAACTTGTACAG
TAGTTGGCTCTGATCCAGAATATATGCTATTAGGTCCAATTCCAGCAACTATTAAAGCAT
TGGAAAAGAGTGGTCTCACTAAAGATCAAATTGATCTATATGAAATTAATGAAGCCTTTG
CATCTGTAGTTTTAGGTTGGAAAAAGGAATTAAATATTGATTTAGATAAAATTAATCCAA
ATGGTGGTGCAATCGCACATGGTCATCCATTAGGTGCAACTGGTTGTATTCTTATGACTA
AAATGGTAAATGAATTAGAAAGATCAAATAAAAAATACGCACTTCAAACAATGTGTATTG
GTTTTGGTCAAGCAACTGCAACAATTATTGAAAATTGTTCATATAAACCAATTTCAAAAT
AAAAAAAAAATAAAAAACTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---SEMIAEKYNLXRDEIDKFSGRSHELADNATKKGYFKDQIIPVTLQDGKVVDKDEGIR
VPVDYKKMSTLKTPFKPNGKISAANASQISDGASAVLLVSGRLVKKLGLKPRARIVTCTV
VGSDPEYMLLGPIPATIKALEKSGLTKDQIDLYEINEAFASVVLGWKKELNIDLDKINPN
GGAIAHGHPLGATGCILMTKMVNELERSNKKYALQTMCIGFGQATATIIENCSYKPISK*
kknkkl
Translated Amino Acid sequence (All Frames) 
Frame A:
---SEMIAEKYNLXRDEIDKFSGRSHELADNATKKGYFKDQIIPVTLQDGKVVDKDEGIR
VPVDYKKMSTLKTPFKPNGKISAANASQISDGASAVLLVSGRLVKKLGLKPRARIVTCTV
VGSDPEYMLLGPIPATIKALEKSGLTKDQIDLYEINEAFASVVLGWKKELNIDLDKINPN
GGAIAHGHPLGATGCILMTKMVNELERSNKKYALQTMCIGFGQATATIIENCSYKPISK*
kknkkl


Frame B:
---lk*lqrniixqemksinslvdltn*qitqqrkaisktkssqspfkmvkllikmkvfv
fq*iirkcql*kphssqmvrlvlqmlhksamvlllsywlvvv*lrn*d*nhvlvl*lvq*
laliqnicy*vqfqqllkhwkrvvslkikliymklmkplhl*f*vgkrn*ili*ikliqm
vvqshmvih*vqlvvfl*lkw*mn*kdqiknthfkqcvlvlvkqlqqllkivhinqfqnk
kkiknf


Frame C:
---*ndcrei*fxkr*nr*ilw*isrisr*rnkerlfqrpnhpshpsrw*sc**r*rysc
ssrl*envnfknpiqakw*d*cckcftnqrwcfccpig*wsfs*eirikttcsycnlyss
wl*sriyairsnssny*sigkewsh*rsn*si*n**slcicsfrlekgiky*fr*n*skw
wcnrtwssircnwlysyd*ngk*irkik*kirtsnnvywfwssncnny*klfi*tnfkik
kk*kt
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG265 (VFG265Q) /CSM/VF/VFG2-C/VFG265Q.Seq.d/                       1392   0.0
SFD167 (SFD167Q) /CSM/SF/SFD1-C/SFD167Q.Seq.d/                       1392   0.0
SFH229 (SFH229Q) /CSM/SF/SFH2-B/SFH229Q.Seq.d/                       1378   0.0
VFO257 (VFO257Q) /CSM/VF/VFO2-C/VFO257Q.Seq.d/                       1279   0.0
AFL282 (AFL282Q) /CSM/AF/AFL2-D/AFL282Q.Seq.d/                       1279   0.0
CFI367 (CFI367Q) /CSM/CF/CFI3-C/CFI367Q.Seq.d/                       1265   0.0
AFN284 (AFN284Q) /CSM/AF/AFN2-D/AFN284Q.Seq.d/                       1261   0.0
VFN804 (VFN804Q) /CSM/VF/VFN8-A/VFN804Q.Seq.d/                       1197   0.0
CFA532 (CFA532Q) /CSM/CF/CFA5-B/CFA532Q.Seq.d/                       1138   0.0
VFL750 (VFL750Q) /CSM/VF/VFL7-C/VFL750Q.Seq.d/                       1084   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BJ172173|BJ172173.1 Physcomitrella patens subsp. patens cDNA clone:pph31g22, 3' end, single read.  1013  0.0  1
AW395348|AW395348.1 sh46h12.y1 Gm-c1017 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1017-4800 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence.    54  9e-07  2
AB026669|AB026669.1 Acinetobacter sp. NCIMB9871 cyclohexanol metabolic gene cluster (orf18, orf17, orf16, orf15, orf14, orf13, orf12, chnB), partial and complete cds.    46  1e-05  2
AR321204|AR321204.1 Sequence 3754 from patent US 6562958.         42  7e-05  3
BI967346|BI967346.1 GM830001B10E12 Gm-r1083 Glycine max cDNA clone Gm-r1083-239 3', mRNA sequence.    54  0.003  1
BI426611|BI426611.1 sag05d03.y1 Gm-c1080 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1080-173 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence.    54  0.003  1
BG042100|BG042100.1 sv14d06.y1 Gm-c1056 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1056-1716 5' similar to TR:Q9XHH0 Q9XHH0 ACETOACETYL COA THIOLASE ;, mRNA sequence.    54  0.003  1
BM092818|BM092818.1 sah19c09.y3 Gm-c1086 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1086-1674 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence.    54  0.003  1
BF070769|BF070769.1 st25a12.y1 Gm-c1067 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1067-23 5' similar to TR:Q43637 Q43637 ACETOACETYL-COENZYME A THIOLASE ;, mRNA sequence.    54  0.003  1
BE824283|BE824283.1 GM700023A20G3 Gm-r1070 Glycine max cDNA clone Gm-r1070-9126 3', mRNA sequence.    54  0.003  1
dna update 2003. 9.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000875_4368(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...   238   2e-61
CP000922_1494(CP000922|pid:none) Anoxybacillus flavithermus WK1,...   237   2e-61
BA000043_2777(BA000043|pid:none) Geobacillus kaustophilus HTA426...   236   6e-61
AE017221_330(AE017221|pid:none) Thermus thermophilus HB27, compl...   233   4e-60
BA000043_1320(BA000043|pid:none) Geobacillus kaustophilus HTA426...   233   5e-60
CP000820_3585(CP000820|pid:none) Frankia sp. EAN1pec, complete g...   224   3e-57
BA000028_2672(BA000028|pid:none) Oceanobacillus iheyensis HTE831...   222   8e-57
CU458896_595(CU458896|pid:none) Mycobacterium abscessus chromoso...   222   1e-56
CP000656_1470(CP000656|pid:none) Mycobacterium gilvum PYR-GCK, c...   221   2e-56
CP000479_581(CP000479|pid:none) Mycobacterium avium 104, complet...   219   5e-56
protein update 2009. 6.20
PSORT 

 psg: 0.75  gvh: 0.22  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for VFG265 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFG265Z
3' end seq. 
>VFG265Z.Seq
----------CTCTGAAATGATTGCAGAGAAATATAATTTANCAAGAGATGAAATCGATA
AATTCTCTGGTAGATCTCACGAATTAGCAGATAACGCAACAAAGAAAGGCTATTTCAAAG
ACCAAATCATCCCAGTCACCCTTCAAGATGGTAAAGTTGTTGATAAAGATGAAGGTATTC
GTGTTCCAGTAGATTATAAGAAAATGTCAACTTTAAAAACCCCATTCAAGCCAAATGGTA
AGATTAGTGCTGCAAATGCTTCACAAATCAGCGATGGTGCTTCTGCTGTCCTATTGGTTA
GTGGTCGTTTAGTTAAGAAATTAGGATTAAAACCACGTGCTCGTATTGTAACTTGTACAG
TAGTTGGCTCTGATCCAGAATATATGCTATTAGGTCCAATTCCAGCAACTATTAAAGCAT
TGGAAAAGAGTGGTCTCACTAAAGATCAAATTGATCTATATGAAATTAATGAAGCCTTTG
CATCTGTAGTTTTAGGTTGGAAAAAGGAATTAAATATTGATTTAGATAAAATTAATCCAA
ATGGTGGTGCAATCGCACATGGTCATCCATTAGGTGCAACTGGTTGTATTCTTATGACTA
AAATGGTAAATGAATTAGAAAGATCAAATAAAAAATACGCACTTCAAACAATGTGTATTG
GTTTTGGTCAAGCAACTGCAACAATTATTGAAAATTGTTCATATAAACCAATTTCAAAAT
AAAAAAAAAATAAAAAACTTT
Length of 3' end seq. 731
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -