VFG206
Library VF
(Link to library)
Clone ID VFG206
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09124-1
Original site URL
Representative seq. ID VFG206Z
(Link to Original site)
Representative DNA sequence
>VFG206 (VFG206Q) /CSM/VF/VFG2-A/VFG206Q.Seq.d/
XXXXXXXXXXGCNGTTACCACAATCGTAGCTGGTAATATCGTTTGGTCTNATAATAAATT
ATCATGTGTCAAAGGTAGTGGTAGATTTGTACCAAGACCACCATTTGGNCCAGTATTTGA
TGGTATTGAACAAAGAGATAAGGTTAGAAATGAATTATTAAGAAAAGTTGATAGAAAACC
ATACGAAGATGATAATACAAAAAATTCANCAAAATAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---VTTIVAGNIVWSXNKLSCVKGSGRFVPRPPFGPVFDGIEQRDKVRNELLRKVDRKPY
EDDNTKNSXK*


Translated Amino Acid sequence (All Frames)
Frame A:
---xlpqs*lvisfgliinyhvskvvvdlyqdhhlxqylmvlnkeirlemny*eklienh
tkmiiqkixqnk


Frame B:
---xyhnrsw*yrlvx**iimcqr*w*ictkttiwxsi*wy*tkr*g*k*iikks**kti
rr**ykkfxkin


Frame C:
---VTTIVAGNIVWSXNKLSCVKGSGRFVPRPPFGPVFDGIEQRDKVRNELLRKVDRKPY
EDDNTKNSXK*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFG206 (VFG206Q) /CSM/VF/VFG2-A/VFG206Q.Seq.d/ 391 e-108
SLA867 (SLA867Q) /CSM/SL/SLA8-C/SLA867Q.Seq.d/ 391 e-108
VFH411 (VFH411Q) /CSM/VF/VFH4-A/VFH411Q.Seq.d/ 387 e-107
VFG406 (VFG406Q) /CSM/VF/VFG4-A/VFG406Q.Seq.d/ 369 e-101
SFJ676 (SFJ676Q) /CSM/SF/SFJ6-D/SFJ676Q.Seq.d/ 369 e-101
SFI218 (SFI218Q) /CSM/SF/SFI2-A/SFI218Q.Seq.d/ 369 e-101
VFC676 (VFC676Q) /CSM/VF/VFC6-D/VFC676Q.Seq.d/ 363 e-100
VFO519 (VFO519Q) /CSM/VF/VFO5-A/VFO519Q.Seq.d/ 353 7e-97
CFB180 (CFB180Q) /CSM/CF/CFB1-D/CFB180Q.Seq.d/ 351 3e-96
VFO256 (VFO256Q) /CSM/VF/VFO2-C/VFO256Q.Seq.d/ 333 6e-91

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF465757|AF465757.1 Dictyostelium discoideum dihydropyrimidine amidohydrolase (pyd2) mRNA, complete cds. 387 e-104 1
AC098048|AC098048.6 Rattus norvegicus clone CH230-115I10, WORKING DRAFT SEQUENCE, 3 unordered pieces. 44 0.67 1
AC121005|AC121005.4 Rattus norvegicus clone CH230-322A11, WORKING DRAFT SEQUENCE, 1 ordered piece. 36 2.6 2
AC040900|AC040900.3 Homo sapiens chromosome 1 clone RP11-162H11 map 1, WORKING DRAFT SEQUENCE, 19 unordered pieces. 42 2.7 1
BX469923|BX469923.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP71-3J3. 42 2.7 1
AC090532|AC090532.1 Homo sapiens chromosome 15 clone RP11-325L11 map 15q21.3, complete sequence. 42 2.7 1
AC016833|AC016833.5 Homo sapiens chromosome 15 clone RP11-438C24 map 15, WORKING DRAFT SEQUENCE, 16 unordered pieces. 42 2.7 1
BF369934|BF369934.1 MR1-FN0009-230500-001-a10 FN0009 Homo sapiens cDNA, mRNA sequence. 42 2.7 1
AC142424|AC142424.2 Rattus norvegicus clone CH230-408K24, WORKING DRAFT SEQUENCE, 39 unordered pieces. 42 2.7 1
AC068052|AC068052.2 Homo sapiens chromosome 5 clone RP11-143H23, WORKING DRAFT SEQUENCE, 12 unordered pieces. 38 4.9 3
dna update 2003. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF465757_1(AF465757|pid:none) Dictyostelium discoideum dihydropy... 104 1e-21

protein update 2009. 2.13
PSORT

psg: 0.87 gvh: 0.44 alm: 0.47 top: 0.73 tms: 0.00 mit: 0.31 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: nuclear
28.0 %: mitochondrial
28.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for VFG206 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFG206Z
3' end seq.
>VFG206Z.Seq
----------GCNGTTACCACAATCGTAGCTGGTAATATCGTTTGGTCTNATAATAAATT
ATCATGTGTCAAAGGTAGTGGTAGATTTGTACCAAGACCACCATTTGGNCCAGTATTTGA
TGGTATTGAACAAAGAGATAAGGTTAGAAATGAATTATTAAGAAAAGTTGATAGAAAACC
ATACGAAGATGATAATACAAAAAATTCANCAAAATAAAT
Length of 3' end seq. 209
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -