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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFG204
Library VF
(Link to library)
Clone ID VFG204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15392-1
Original site URL
Representative seq. ID VFG204Z
(Link to Original site)
Representative DNA sequence 
>VFG204 (VFG204Q) /CSM/VF/VFG2-A/VFG204Q.Seq.d/
XXXXXXXXXXAATTAGAACGTGCTAAAGCTGTCNTNTAAATCAAGCGTTTTAGACAAGCT
GAAAGCAGAACCTCNNCCCTCGAATTCATTGGTAAACAAGCTATCTATACCGACAAAGTT
TTAACTCCAGCTGAATTTGCTGAAGAAATCCCTAAAGTTACCTCTGAAGATATTAAAAGA
GTTGCCAAGAAAATGACCTCCAAAAAACCAACCCTCGTTGTTGTTGGTGATGTCTCTAAG
CTCCAACTATCGAATCAGTTCAATCACAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---lerakavx*IKRFRQAESRTSXLEFIGKQAIYTDKVLTPAEFAEEIPKVTSEDIKRV
AKKMTSKKPTLVVVGDVSKLQLSNQFNHN
Translated Amino Acid sequence (All Frames) 
Frame A:
---irtc*scxxnqaf*ts*kqnlxprihw*tsylyrqsfnss*ic*rnp*syl*ry*ks
cqendlqktnprccw*cl*aptiesvqsq


Frame B:
---lerakavx*IKRFRQAESRTSXLEFIGKQAIYTDKVLTPAEFAEEIPKVTSEDIKRV
AKKMTSKKPTLVVVGDVSKLQLSNQFNHN


Frame C:
---*nvlklsxkssvldklkaepxpsnslvnklsiptkf*lqlnllkkslklplkilkel
prk*ppknqpslllvmslssnyrissit
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFG204 (VFG204Q) /CSM/VF/VFG2-A/VFG204Q.Seq.d/                        492   e-138
VFB649 (VFB649Q) /CSM/VF/VFB6-C/VFB649Q.Seq.d/                        438   e-122
VFG404 (VFG404Q) /CSM/VF/VFG4-A/VFG404Q.Seq.d/                        434   e-121
VSC293 (VSC293Q) /CSM/VS/VSC2-D/VSC293Q.Seq.d/                        432   e-120
SSK279 (SSK279Q) /CSM/SS/SSK2-D/SSK279Q.Seq.d/                        432   e-120
SLI167 (SLI167Q) /CSM/SL/SLI1-C/SLI167Q.Seq.d/                        432   e-120
FCL-AC29 (FCL-AC29Q) /CSM/FCL/FCL-AC/FCL-AC29Q.Seq.d/                 432   e-120
AFN282 (AFN282Q) /CSM/AF/AFN2-D/AFN282Q.Seq.d/                        432   e-120
VFG120 (VFG120Q) /CSM/VF/VFG1-A/VFG120Q.Seq.d/                        426   e-119
VFF577 (VFF577Q) /CSM/VF/VFF5-D/VFF577Q.Seq.d/                        426   e-119
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH165037|BH165037.1 ENTTE68TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, genomic survey sequence.    44  0.85  1
AC132895|AC132895.2 Mus musculus clone RP24-370M16, WORKING DRAFT SEQUENCE, 12 unordered pieces.    42  3.3  1
CF369697|CF369697.1 rg55a11.y1 Meloidogyne hapla female SMART pGEM Meloidogyne hapla cDNA 5', mRNA sequence.    42  3.3  1
AC137583|AC137583.3 Mus musculus clone RP23-140F24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    42  3.3  1
AL065110|AL065110.1 Drosophila melanogaster genome survey sequence T7 end of BAC #  BACR13N12 of RPCI-98 library from Drosophila melanogaster (fruit  fly).    42  3.3  1
CF369814|CF369814.1 rg56e05.y1 Meloidogyne hapla female SMART pGEM Meloidogyne hapla cDNA 5', mRNA sequence.    42  3.3  1
CF369841|CF369841.1 rg56h02.y1 Meloidogyne hapla female SMART pGEM Meloidogyne hapla cDNA 5', mRNA sequence.    42  3.3  1
CF370103|CF370103.1 rg48b10.y1 Meloidogyne hapla female SMART pGEM Meloidogyne hapla cDNA 5', mRNA sequence.    42  3.3  1
AC009913|AC009913.10 Drosophila melanogaster chromosome 2 clone BACR04F06 (D1057) RPCI-98 04.F.6 map 41C-41C strain y; cn bw sp, *** SEQUENCING IN PROGRESS ***, 41 unordered pieces.    42  3.3  1
AC017157|AC017157.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    42  3.3  1
dna update 2003. 9.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC085400_1(BC085400|pid:none) Danio rerio peptidase (mitochondri...    54   2e-06
CP001016_712(CP001016|pid:none) Beijerinckia indica subsp. indic...    50   2e-05
(Q0P5M8) RecName: Full=Mitochondrial-processing peptidase subuni...    49   5e-05
(P20069) RecName: Full=Mitochondrial-processing peptidase subuni...    49   5e-05
BC079004_1(BC079004|pid:none) Rattus norvegicus peptidase (mitoc...    49   5e-05
(Q5R513) RecName: Full=Mitochondrial-processing peptidase subuni...    48   9e-05
D50913_1(D50913|pid:none) Homo sapiens KIAA0123 mRNA, partial cds.     48   9e-05
CR861072_1(CR861072|pid:none) Pongo abelii mRNA; cDNA DKFZp459H0...    48   9e-05
AK296617_1(AK296617|pid:none) Homo sapiens cDNA FLJ54999 complet...    48   9e-05
D21064_1(D21064|pid:none) Homo sapiens KIAA0123 mRNA, partial cds.     48   9e-05
protein update 2009. 6.20
PSORT 

 psg: 0.80  gvh: 0.27  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VFG204 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFG204Z
3' end seq. 
>VFG204Z.Seq
----------AATTAGAACGTGCTAAAGCTGTCNTNTAAATCAAGCGTTTTAGACAAGCT
GAAAGCAGAACCTCNNCCCTCGAATTCATTGGTAAACAAGCTATCTATACCGACAAAGTT
TTAACTCCAGCTGAATTTGCTGAAGAAATCCCTAAAGTTACCTCTGAAGATATTAAAAGA
GTTGCCAAGAAAATGACCTCCAAAAAACCAACCCTCGTTGTTGTTGGTGATGTCTCTAAG
CTCCAACTATCGAATCAGTTCAATCACAAC
Length of 3' end seq. 260
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -