VFG179
Library VF
(Link to library)
Clone ID VFG179
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12091-1
Original site URL
Representative seq. ID VFG179P
(Link to Original site)
Representative DNA sequence
>VFG179 (VFG179Q) /CSM/VF/VFG1-D/VFG179Q.Seq.d/
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACCTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGTGG
TGATAAGAATGCTAAXXXXXXXXXXCAACCAGTTCATTGAATAGTGGTGACTGTTTCCTT
TTGGATGCAGGTTTAACTATTTATCAATTCAATGGTAGTAAATCAAGTCCACAAGAAAAG
AATAAAGCCGCTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTTTACCAAAAGTT
GAAGTTTTCTGTGAAACCGATTCCGATATTCCAGCTGAATTTTGGAAACTTTTAGGTGGA
AAAGGTGCAATCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAAAAGTTTTATAC
AAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTGGTAAAATCAAT
AAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATGAAATCTATACT
TGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTCATGCAACTCAA
TACTTGGTAAACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTTTAGAAAATGGT
ACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAATAAAACACAACAACAACAACA
ACACATTCAAAAAATCAATTTGTATCATAAAATAAAATAAAATATAAACTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
i*KTIIKTTNTKMIKNRKLDITSTNVAGIGTDLDKKCRLDAASTEAQWKGVGQAPGLKIW
RIENFKVVPVPESSYGKFYDGDSYIILHTFKEGNSPKHDIHFFLGTFTTQDEAGTAAYKT
VELDDFLGGAPIQYRQCQSYESPSFLSLFPKYFILSGGVESGFNHVKPTEYKPRLLHISG
DKNA---

---TSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLPKVEVFCET
DSDIPAEFWKLLGGKGAIAAKHETAPTKSEKVLYKLSDASGSLKFSEVSRGKINKSSLKS
EDVFIIDLGNEIYTWIGSKSSPNEKKTAFSHATQYLVNNKRCEYTPIVRVLENGTNQSFE
TLLSA***ntttttthsknqfvs*nkikykl


Translated Amino Acid sequence (All Frames)
Frame A:
nlknnyknnkyknd*e*kiryyfn*ccwywnrfr*km*igcsfn*ssmercwsstrsqdl
en*kf*scpssriiiw*il*w**lyhftyf*rr*ft*t*ysflfryfyysr*swhccl*n
s*ir*flrwctnsissmsii*ksklfiiipkifhfirwc*iri*sc*tnri*tkiity*w
**ec*---

---qpvh*ivvtvsfwmqv*lfinsmvvnqvhkkrikplklhvqsmqkekvyqklkfsvk
pipifqlnfgnf*vekvqsllntklpqpnlkkfytnyqmhlvhlnslkfhvvksinph*n
lkmfssli*vmksilgsvqnhhqmkrkqhsvmqlntw*tinvvnilq*lef*kmvqinhl
klyyllnnktqqqqqhiqkinlyhkik*ninf

Frame B:
i*KTIIKTTNTKMIKNRKLDITSTNVAGIGTDLDKKCRLDAASTEAQWKGVGQAPGLKIW
RIENFKVVPVPESSYGKFYDGDSYIILHTFKEGNSPKHDIHFFLGTFTTQDEAGTAAYKT
VELDDFLGGAPIQYRQCQSYESPSFLSLFPKYFILSGGVESGFNHVKPTEYKPRLLHISG
DKNA---

---nqfie*w*lfpfgcrfnylsiqw**ikstrke*sr*sctcnrcrkkrftks*sfl*n
rfryss*iletfrwkrcnrc*trncpnqi*ksfiqiirciwft*il*sftw*nq*iliki
*rcfhh*fr**nlyldrfkiitk*kensiqscnsilgkq*tl*iysns*sfrkwyksii*
nfiicliikhnnnnntfkksiciik*nki*t

Frame C:
fkkql*kqqiqk*lrien*illqlmllvleqi*iknvdwmqlqlklngkvlvkhqvsrfg
elkilklsqfqnhhmvnsmmvivisfyillkkvihlnmifisf*vllllkmklalllikq
ln*mis*vvhqfnivnvnhmkvqafyhysqnisfyqvvlnqdlimlnqqninqdyyilvv
irml---

---TSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLPKVEVFCET
DSDIPAEFWKLLGGKGAIAAKHETAPTKSEKVLYKLSDASGSLKFSEVSRGKINKSSLKS
EDVFIIDLGNEIYTWIGSKSSPNEKKTAFSHATQYLVNNKRCEYTPIVRVLENGTNQSFE
TLLSA***ntttttthsknqfvs*nkikykl

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFG179 (VFG179Q) /CSM/VF/VFG1-D/VFG179Q.Seq.d/ 2089 0.0
VSJ766 (VSJ766Q) /CSM/VS/VSJ7-C/VSJ766Q.Seq.d/ 1104 0.0
VFO524 (VFO524Q) /CSM/VF/VFO5-A/VFO524Q.Seq.d/ 1104 0.0
VFO316 (VFO316Q) /CSM/VF/VFO3-A/VFO316Q.Seq.d/ 1104 0.0
VFN492 (VFN492Q) /CSM/VF/VFN4-D/VFN492Q.Seq.d/ 1104 0.0
VFM108 (VFM108Q) /CSM/VF/VFM1-A/VFM108Q.Seq.d/ 1104 0.0
VFL823 (VFL823Q) /CSM/VF/VFL8-A/VFL823Q.Seq.d/ 1104 0.0
VFL736 (VFL736Q) /CSM/VF/VFL7-B/VFL736Q.Seq.d/ 1104 0.0
VFL329 (VFL329Q) /CSM/VF/VFL3-B/VFL329Q.Seq.d/ 1104 0.0
VFL167 (VFL167Q) /CSM/VF/VFL1-C/VFL167Q.Seq.d/ 1104 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

J03515|J03515.1 Slime mold (D.discoideum) severin mRNA, complete cds. 1104 0.0 2
U66525|U66525.1 Dictyostelium discoideum ORFveg114 mRNA, complete cds. 100 8e-17 1
BP190606|BP190606.1 Dugesia japonica cDNA, clone: 04979_HH, expressed in the head. 56 0.001 1
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5. 36 0.051 9
AC104159|AC104159.2 Pan troglodytes clone RP43-82O21, WORKING DRAFT SEQUENCE, 1 ordered pieces. 48 0.26 1
AC137821|AC137821.13 Medicago truncatula clone mth2-15o11, WORKING DRAFT SEQUENCE, 2 ordered pieces. 42 0.26 3
AL031643|AL031643.1 Human DNA sequence from clone 769D20 on chromosome Xp21.1-21.3 Contains EST, STS, GSS. 36 0.55 5
AC103388|AC103388.2 Mus musculus clone RP24-403B15, WORKING DRAFT SEQUENCE, 5 unordered pieces. 42 0.95 4
AC123754|AC123754.3 Mus musculus clone RP24-200M15, WORKING DRAFT SEQUENCE, 12 unordered pieces. 46 1.0 1
AC002528|AC002528.1 Human BAC clone GS1-542D18 from 7q31-q32, complete sequence. 48 1.0 2
dna update 2003. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U70047_1(U70047|pid:none) Physarum polycephalum actin-binding pr... 206 4e-88
AJ621806_1(AJ621806|pid:none) Suberites ficus mRNA for gelsolin ... 186 1e-68
AM920435_1012(AM920435|pid:none) Penicillium chrysogenum Wiscons... 185 1e-63
S51363(S51363;S49320) actin modulator protein EWAM - earthworm (... 174 3e-61
FN313917_1(FN313917|pid:none) Schistosoma japonicum isolate Anhu... 147 9e-61
AM270354_42(AM270354|pid:none) Aspergillus niger contig An16c002... 171 4e-60
FN316954_1(FN316954|pid:none) Schistosoma japonicum isolate Anhu... 147 2e-57
AY814387_1(AY814387|pid:none) Schistosoma japonicum SJCHGC01371 ... 147 2e-57
FN317120_1(FN317120|pid:none) Schistosoma japonicum isolate Anhu... 147 2e-57
EU334660_1(EU334660|pid:none) Strongylocentrotus purpuratus vill... 157 3e-57
protein update 2009. 6.20
PSORT

psg: 0.40 gvh: 0.37 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFG179 is nuc

5' end seq. ID VFG179F
5' end seq.
>VFG179F.Seq
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACCTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGTGG
TGATAAGAATGCTAA----------
Length of 5' end seq. 555
3' end seq. ID VFG179Z
3' end seq.
>VFG179Z.Seq
----------CAACCAGTTCATTGAATAGTGGTGACTGTTTCCTTTTGGATGCAGGTTTA
ACTATTTATCAATTCAATGGTAGTAAATCAAGTCCACAAGAAAAGAATAAAGCCGCTGAA
GTTGCACGTGCAATCGATGCAGAAAGAAAAGGTTTACCAAAAGTTGAAGTTTTCTGTGAA
ACCGATTCCGATATTCCAGCTGAATTTTGGAAACTTTTAGGTGGAAAAGGTGCAATCGCT
GCTAAACACGAAACTGCCCCAACCAAATCTGAAAAAGTTTTATACAAATTATCAGATGCA
TCTGGTTCACTTAAATTCTCTGAAGTTTCACGTGGTAAAATCAATAAATCCTCATTAAAA
TCTGAAGATGTTTTCATCATTGATTTAGGTAATGAAATCTATACTTGGATCGGTTCAAAA
TCATCACCAAATGAAAAGAAAACAGCATTCAGTCATGCAACTCAATACTTGGTAAACAAT
AAACGTTGTGAATATACTCCAATAGTTAGAGTTTTAGAAAATGGTACAAATCAATCATTT
GAAACTTTATTATCTGCTTAATAATAAAACACAACAACAACAACAACACATTCAAAAAAT
CAATTTGTATCATAAAATAAAATAAAATATAAACTTT
Length of 3' end seq. 627
Connected seq. ID VFG179P
Connected seq.
>VFG179P.Seq
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACCTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGTGG
TGATAAGAATGCTAA----------CAACCAGTTCATTGAATAGTGGTGACTGTTTCCTT
TTGGATGCAGGTTTAACTATTTATCAATTCAATGGTAGTAAATCAAGTCCACAAGAAAAG
AATAAAGCCGCTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTTTACCAAAAGTT
GAAGTTTTCTGTGAAACCGATTCCGATATTCCAGCTGAATTTTGGAAACTTTTAGGTGGA
AAAGGTGCAATCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAAAAGTTTTATAC
AAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTGGTAAAATCAAT
AAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATGAAATCTATACT
TGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTCATGCAACTCAA
TACTTGGTAAACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTTTAGAAAATGGT
ACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAATAAAACACAACAACAACAACA
ACACATTCAAAAAATCAATTTGTATCATAAAATAAAATAAAATATAAACTTT
Length of connected seq. 1182
Full length Seq ID -
Full length Seq. -
Length of full length seq. -