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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM517
Library AF
(Link to library)
Clone ID AFM517
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM517 (AFM517Q) /CSM/AF/AFM5-A/AFM517Q.Seq.d/
XXXXXXXXXXCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGATATGAAGAAA
TTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCTCTGTT
GATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCATTCGAT
ACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTAAATCT
CAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTTTCAAA
AAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGTGCGGT
CATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACGTTGAA
TCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCGAAATT
AGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCTCTTAT
GAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGCTGCCATT
GAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAAGATTCTTCTG
CTAAACANANAATATAATAATTAA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
---TSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFSFDT
VSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGH
CKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYE
GQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILLLNXXYNN*
Translated Amino Acid sequence (All Frames) 
Frame A:
---yltkr*crfllgryeeipttsnsygslw*scsshlc*fscq*sslqfr*krnlliry
rlqmdprchww*sfsic*istrtrik*css*gcrwyhfqkvgfrltkgcfg*ilrsmvrs
lqescsnlr*ir*ilkrr*iclnrkd*crlk*ctk*yrn*rlpnhhalqs**qrksnll*
rskk*syelc*ihsr*rch*iqitiisn***cxskkdssakxxi**l


Frame B:
---TSQKGNAVFCWVDMKKFPQQATHMGLSGKVVPAISVDSVANKARYNFDEKETFSFDT
VSKWIQDVIGGKVSPFVKSQPEPESNDAPVKVAVGTTFKKLVLDSPKDVLVEFYAPWCGH
CKNLAPIYDKLGEYLKDVESVSIVKIDADSNDVPSDIEIRGYPTIMLFKADDKENPISYE
GQRNDHMNFVEFIQDNAAIEFKLPSSQTDDNVNLKKILLLNXXYNN*


Frame C:
---phkkvmpfsvgsi*rnshnkqliwvslvklfqpslliqlpiklvtismkkkpshsip
spngskmslvvkflhllnlnqnqnqmmlqlrlplvplskswf*thqrmfwlnstlhgavi
arillqstin*vnt*ktlnlsqs*rlmptqmmyqvisklevtqpscssklmtkkiqslmk
vkemii*tllnsfkitlplnsnyhhlklmimxi*krffc*txniii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM517 (AFM517Q) /CSM/AF/AFM5-A/AFM517Q.Seq.d/                       1318   0.0
AFH816 (AFH816Q) /CSM/AF/AFH8-A/AFH816Q.Seq.d/                       1318   0.0
AFN461 (AFN461Q) /CSM/AF/AFN4-C/AFN461Q.Seq.d/                       1304   0.0
AFM548 (AFM548Q) /CSM/AF/AFM5-B/AFM548Q.Seq.d/                       1302   0.0
AFK217 (AFK217Q) /CSM/AF/AFK2-A/AFK217Q.Seq.d/                       1302   0.0
SFL246 (SFL246Q) /CSM/SF/SFL2-B/SFL246Q.Seq.d/                       1296   0.0
SFK855 (SFK855Q) /CSM/SF/SFK8-C/SFK855Q.Seq.d/                       1296   0.0
SFI119 (SFI119Q) /CSM/SF/SFI1-A/SFI119Q.Seq.d/                       1296   0.0
AFO686 (AFO686Q) /CSM/AF/AFO6-D/AFO686Q.Seq.d/                       1296   0.0
AFO368 (AFO368Q) /CSM/AF/AFO3-C/AFO368Q.Seq.d/                       1296   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ347059) Dictyostelium discoideum cDNA clone:dda26a05, 3' ...  1318   0.0    1
(BJ343480) Dictyostelium discoideum cDNA clone:dda16p04, 3' ...  1318   0.0    1
(BJ347614) Dictyostelium discoideum cDNA clone:dda27j16, 3' ...  1304   0.0    1
(BJ402473) Dictyostelium discoideum cDNA clone:dds17e05, 3' ...  1296   0.0    1
(BJ401481) Dictyostelium discoideum cDNA clone:dds23k12, 3' ...  1296   0.0    1
(BJ401263) Dictyostelium discoideum cDNA clone:dds22n14, 3' ...  1296   0.0    1
(BJ347511) Dictyostelium discoideum cDNA clone:dda27g07, 3' ...  1296   0.0    1
(BJ347426) Dictyostelium discoideum cDNA clone:dda27g02, 3' ...  1296   0.0    1
(BJ347369) Dictyostelium discoideum cDNA clone:dda26l19, 3' ...  1296   0.0    1
(BJ347275) Dictyostelium discoideum cDNA clone:dda26j16, 3' ...  1296   0.0    1
dna update 2009. 4.12
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G...   169   7e-41
(Q12730) RecName: Full=Protein disulfide-isomerase;          Sho...   165   1e-39
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-...   163   4e-39
(Q00248) RecName: Full=Protein disulfide-isomerase;          Sho...   163   5e-39
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul...   158   1e-37
CU633901_146(CU633901|pid:none) Podospora anserina genomic DNA c...   156   6e-37
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos...   154   2e-36
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ...   151   1e-35
AK290971_1(AK290971|pid:none) Homo sapiens cDNA FLJ78033 complet...   150   2e-35
BC046707_1(BC046707|pid:none) Xenopus laevis glucose regulated p...   150   2e-35
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM517 is

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFM517Z
3' end seq. 
>AFM517Z.Seq
XXXXXXXXXXCTACCTCACAAAAAGGTAATGCCGTTTTCTGTTGGGTCGATATGAAGAAA
TTCCCACAACAAGCAACTCATATGGGTCTCTCTGGTAAAGTTGTTCCAGCCATCTCTGTT
GATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCATTCGAT
ACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTTAAATCT
CAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGGTTGCCGTTGGTACCACTTTCAAA
AAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGGTGCGGT
CATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGACGTTGAA
TCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATCGAAATT
AGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATCTCTTAT
GAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGCTGCCATT
GAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAAGATTCTTCTG
CTAAACANANAATATAATAATTAA
Length of 3' end seq. 684
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -