VFG144
Library VF
(Link to library)
Clone ID VFG144
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16605-1
Original site URL
Representative seq. ID VFG144P
(Link to Original site)
Representative DNA sequence
>VFG144 (VFG144Q) /CSM/VF/VFG1-B/VFG144Q.Seq.d/
TTAAATATATATATACTAAAAATGAGAGTTTTATCATTCCTTTGTTTATTATTAGTTAGC
TACGCTTCTGCTAAACAACAATTCTCTGAATTACAATACAGAAATGCTTTCACCAACTGG
ATGCAAGCTCACCAAAGAACTTATTCCTCTGAAGAATTTAATGCTCGTTATCAAATCTTC
AAATCCAATATGGATTATGTACACCAATGGAATTCAAAAGGTGGTGAAACCGTTTTGGGT
TTAAATGTTTTCGCTGATATTACCAACCAAGAATATAGAACTACCTACTTGGGTACCCCA
TTCGATGGTTCAGCCCTCATTGGTACTGAAGAAGAGAAAATCTTCTCCACCCCAGCCCCA
ACTGTTGATTGGAGAGCTCAAGGTGCTGTCACACCAATTAAAAATCAAGGTCAATGTGGT
GGCTGCTGGTCATTCTCAACCACTGGTTCAACTGAAGGTGCTCACTTTATTGCATCTGGA
ACAAAAAAAGATTTAGTTTCATTATCTGAACAAAACTTGATCGATTGTTCAAAATCATAC
GGTAACAATGGTTGTGAAGGTGGTTTAATGACTCTTGCCTTTGAATATATCATCAATAAC
AAAGGTATTGATACTGAAAGTAGXXXXXXXXXXTGAACCAGCATGTTCTCCAACCCAACT
TGATCATGGTGTTTTAGTTGTTGGTTATGGTTCAGGTTCAAGTTCATCATCTGGTTCATC
ATCTGGTAAATCATCATCATCATCATCAACTGGTGGTAAAACTTCATCCTCATCATCATC
AGGTAAAGCTTNATNATNATCATCAGGCAAAGCTTCATCATCATCATCATCAGGTAAAAC
TTCATNTGCTGCTTCATCAACCTNTGGTTNTCAATCAGGTTNCCAATCAGGTANCCAATC
AGGCCAATCCCCCGGTTCNCAATCAGGTCAAACCTNTGCTTCTGGTCAAGCATCAGCATC
AGGTTCTGGTTCTGGCTTAGGTTCAGGTTCAGGTTCAGGTTCAGGCNCAGGTGCTGTTNA
GGCCTCATCTGGTAACTACTGGATCGTTAAAAACNCATGGGGNACTTCATGGGGNANGGA
TGGTTACNTTTTTATGAGCAAANATANAAANAACNATTGTGGNATCGCAACAATGGCTTC
TTTCCCAACTGCCTCATCAAATTAAAATTTTATTTTTAANTGNCCNACTAACNTTAATTT
GATTTGTAATAAATAAAAAAAATAAAAATAAAAAATNAAATAAAAAAAAAAAAACT
sequence update 2001. 6. 1
Translated Amino Acid sequence
LNIYILKMRVLSFLCLLLVSYASAKQQFSELQYRNAFTNWMQAHQRTYSSEEFNARYQIF
KSNMDYVHQWNSKGGETVLGLNVFADITNQEYRTTYLGTPFDGSALIGTEEEKIFSTPAP
TVDWRAQGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSKSY
GNNGCEGGLMTLAFEYIINNKGIDTES---

---EPACSPTQLDHGVLVVGYGSGSSSSSGSSSGKSSSSSSTGGKTSSSSSSGKAXXXSS
GKASSSSSSGKTSXAASSTXGXQSGXQSGXQSGQSPGSQSGQTXASGQASASGSGSGLGS
GSGSGSGXGAVXASSGNYWIVKNXWGTSWGXDGYXFMSKXXXNXCGIATMASFPTASSN*
nfifxxptnxnlicnk*kk*k*kxk*kkkn


Translated Amino Acid sequence (All Frames)
Frame A:
LNIYILKMRVLSFLCLLLVSYASAKQQFSELQYRNAFTNWMQAHQRTYSSEEFNARYQIF
KSNMDYVHQWNSKGGETVLGLNVFADITNQEYRTTYLGTPFDGSALIGTEEEKIFSTPAP
TVDWRAQGAVTPIKNQGQCGGCWSFSTTGSTEGAHFIASGTKKDLVSLSEQNLIDCSKSY
GNNGCEGGLMTLAFEYIINNKGIDTES---

---*tsmfsnpt*swcfscwlwfrfkfiiwfiiw*iiiiiinww*nfiliiir*sxxxii
rqsfiiiiir*nfxccfinlwxsirxpirxpirpiprfxirsnlcfwssisirfwfwlrf
rfrfrfrxrccxgliw*lldr*kxmgxfmgxgwlxfyeqxxkxxlwxrnngffpnclikl
kfyf*xxx*x*fdl**ikkikiknxikkkk

Frame B:
*iyiy*k*efyhsfvyy*latlllnnnslnyntemlsptgckltkeliplknlmlvikss
npiwimytngiqkvvkpfwv*mfslilptknielptwvphsmvqpslvlkkrkssppqpq
lligelkvlshqlkikvnvvaaghsqplvqlkvltllhleqkki*fhylnkt*sivqnht
vtmvvkvv**llplnissitkvlilkv---

---EPACSPTQLDHGVLVVGYGSGSSSSSGSSSGKSSSSSSTGGKTSSSSSSGKAXXXSS
GKASSSSSSGKTSXAASSTXGXQSGXQSGXQSGQSPGSQSGQTXASGQASASGSGSGLGS
GSGSGSGXGAVXASSGNYWIVKNXWGTSWGXDGYXFMSKXXXNXCGIATMASFPTASSN*
nfifxxptnxnlicnk*kk*k*kxk*kkkn

Frame C:
kyiytknesfiiplfiis*lrfc*ttil*itiqkcfhqldasspknlfl*ri*cslsnlq
iqyglctpmefkrw*nrfgfkcfr*yyqpri*nyllgypirwfsphwy*rrenllhpspn
c*lessrcchtn*ksrsmwwllvilnhwfn*rcslyciwnkkrfsfii*tkldrlfkiir
*qwl*rwfndscl*iyhq*qry*y*k*---

---nqhvlqpnlimvf*llvmvqvqvhhlvhhlvnhhhhhqlvvklhphhhqvklxxxhq
aklhhhhhqvklhxllhqpxvxnqvxnqvxnqanppvxnqvkpxllvkhqhqvlvla*vq
vqvqvqaqvlxrphlvttgslkthgxlhgxxmvtfl*axixxtivxsqqwllsqlphqik
ilflxxxltli*fvinkknknkkxnkkkkt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFG144 (VFG144Q) /CSM/VF/VFG1-B/VFG144Q.Seq.d/ 1292 0.0
VFN294 (VFN294Q) /CSM/VF/VFN2-D/VFN294Q.Seq.d/ 1193 0.0
VFM804 (VFM804Q) /CSM/VF/VFM8-A/VFM804Q.Seq.d/ 1193 0.0
VFL463 (VFL463Q) /CSM/VF/VFL4-C/VFL463Q.Seq.d/ 1193 0.0
VFL389 (VFL389Q) /CSM/VF/VFL3-D/VFL389Q.Seq.d/ 1193 0.0
VFK680 (VFK680Q) /CSM/VF/VFK6-D/VFK680Q.Seq.d/ 1193 0.0
VFK619 (VFK619Q) /CSM/VF/VFK6-A/VFK619Q.Seq.d/ 1193 0.0
VFI606 (VFI606Q) /CSM/VF/VFI6-A/VFI606Q.Seq.d/ 1193 0.0
VFF738 (VFF738Q) /CSM/VF/VFF7-B/VFF738Q.Seq.d/ 1193 0.0
VFF720 (VFF720Q) /CSM/VF/VFF7-A/VFF720Q.Seq.d/ 1193 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds. 922 0.0 6
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds. 147 e-128 7
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds. 121 e-122 9
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds. 115 e-113 7
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 121 e-106 12
X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2. 72 8e-49 7
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds. 66 8e-45 10
X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1. 70 1e-18 3
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome. 76 1e-10 3
U30297|U30297.1 Amsacta moorei entomopoxvirus filament-associated late protein, FALPE, complete cds. 76 1e-09 1
dna update 2003. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot... 412 e-113
(Q94504) RecName: Full=Cysteine proteinase 7; EC=3.4.22... 328 2e-88
(Q94503) RecName: Full=Cysteine proteinase 6; EC=3.4.22... 316 1e-84
(P54640) RecName: Full=Cysteine proteinase 5; EC=3.4.22... 315 3e-84
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot... 308 3e-82
(P04989) RecName: Full=Cysteine proteinase 2; EC=3.4.22... 232 2e-59
EF053509_1(EF053509|pid:none) Acanthamoeba castellanii cysteine ... 203 9e-51
AC117076_20(AC117076|pid:none) Dictyostelium discoideum chromoso... 172 3e-41
AK226753_1(AK226753|pid:none) Arabidopsis thaliana mRNA for papa... 167 6e-40
AC000132_24(AC000132|pid:none) Sequence of BAC F21M12 from Arabi... 167 6e-40
protein update 2009. 6.20
PSORT

psg: 0.96 gvh: 0.87 alm: 0.51 top: 0.40 tms: 0.00 mit: 0.37 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

68.0 %: extracellular, including cell wall
8.0 %: mitochondrial
8.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: Golgi

>> prediction for VFG144 is exc

5' end seq. ID VFG144F
5' end seq.
>VFG144F.Seq
TTAAATATATATATACTAAAAATGAGAGTTTTATCATTCCTTTGTTTATTATTAGTTAGC
TACGCTTCTGCTAAACAACAATTCTCTGAATTACAATACAGAAATGCTTTCACCAACTGG
ATGCAAGCTCACCAAAGAACTTATTCCTCTGAAGAATTTAATGCTCGTTATCAAATCTTC
AAATCCAATATGGATTATGTACACCAATGGAATTCAAAAGGTGGTGAAACCGTTTTGGGT
TTAAATGTTTTCGCTGATATTACCAACCAAGAATATAGAACTACCTACTTGGGTACCCCA
TTCGATGGTTCAGCCCTCATTGGTACTGAAGAAGAGAAAATCTTCTCCACCCCAGCCCCA
ACTGTTGATTGGAGAGCTCAAGGTGCTGTCACACCAATTAAAAATCAAGGTCAATGTGGT
GGCTGCTGGTCATTCTCAACCACTGGTTCAACTGAAGGTGCTCACTTTATTGCATCTGGA
ACAAAAAAAGATTTAGTTTCATTATCTGAACAAAACTTGATCGATTGTTCAAAATCATAC
GGTAACAATGGTTGTGAAGGTGGTTTAATGACTCTTGCCTTTGAATATATCATCAATAAC
AAAGGTATTGATACTGAAAGTAG----------
Length of 5' end seq. 623
3' end seq. ID VFG144Z
3' end seq.
>VFG144Z.Seq
----------TGAACCAGCATGTTCTCCAACCCAACTTGATCATGGTGTTTTAGTTGTTG
GTTATGGTTCAGGTTCAAGTTCATCATCTGGTTCATCATCTGGTAAATCATCATCATCAT
CATCAACTGGTGGTAAAACTTCATCCTCATCATCATCAGGTAAAGCTTNATNATNATCAT
CAGGCAAAGCTTCATCATCATCATCATCAGGTAAAACTTCATNTGCTGCTTCATCAACCT
NTGGTTNTCAATCAGGTTNCCAATCAGGTANCCAATCAGGCCAATCCCCCGGTTCNCAAT
CAGGTCAAACCTNTGCTTCTGGTCAAGCATCAGCATCAGGTTCTGGTTCTGGCTTAGGTT
CAGGTTCAGGTTCAGGTTCAGGCNCAGGTGCTGTTNAGGCCTCATCTGGTAACTACTGGA
TCGTTAAAAACNCATGGGGNACTTCATGGGGNANGGATGGTTACNTTTTTATGAGCAAAN
ATANAAANAACNATTGTGGNATCGCAACAATGGCTTCTTTCCCAACTGCCTCATCAAATT
AAAATTTTATTTTTAANTGNCCNACTAACNTTAATTTGATTTGTAATAAATAAAAAAAAT
AAAAATAAAAAATNAAATAAAAAAAAAAAAACT
Length of 3' end seq. 623
Connected seq. ID VFG144P
Connected seq.
>VFG144P.Seq
TTAAATATATATATACTAAAAATGAGAGTTTTATCATTCCTTTGTTTATTATTAGTTAGC
TACGCTTCTGCTAAACAACAATTCTCTGAATTACAATACAGAAATGCTTTCACCAACTGG
ATGCAAGCTCACCAAAGAACTTATTCCTCTGAAGAATTTAATGCTCGTTATCAAATCTTC
AAATCCAATATGGATTATGTACACCAATGGAATTCAAAAGGTGGTGAAACCGTTTTGGGT
TTAAATGTTTTCGCTGATATTACCAACCAAGAATATAGAACTACCTACTTGGGTACCCCA
TTCGATGGTTCAGCCCTCATTGGTACTGAAGAAGAGAAAATCTTCTCCACCCCAGCCCCA
ACTGTTGATTGGAGAGCTCAAGGTGCTGTCACACCAATTAAAAATCAAGGTCAATGTGGT
GGCTGCTGGTCATTCTCAACCACTGGTTCAACTGAAGGTGCTCACTTTATTGCATCTGGA
ACAAAAAAAGATTTAGTTTCATTATCTGAACAAAACTTGATCGATTGTTCAAAATCATAC
GGTAACAATGGTTGTGAAGGTGGTTTAATGACTCTTGCCTTTGAATATATCATCAATAAC
AAAGGTATTGATACTGAAAGTAG----------TGAACCAGCATGTTCTCCAACCCAACT
TGATCATGGTGTTTTAGTTGTTGGTTATGGTTCAGGTTCAAGTTCATCATCTGGTTCATC
ATCTGGTAAATCATCATCATCATCATCAACTGGTGGTAAAACTTCATCCTCATCATCATC
AGGTAAAGCTTNATNATNATCATCAGGCAAAGCTTCATCATCATCATCATCAGGTAAAAC
TTCATNTGCTGCTTCATCAACCTNTGGTTNTCAATCAGGTTNCCAATCAGGTANCCAATC
AGGCCAATCCCCCGGTTCNCAATCAGGTCAAACCTNTGCTTCTGGTCAAGCATCAGCATC
AGGTTCTGGTTCTGGCTTAGGTTCAGGTTCAGGTTCAGGTTCAGGCNCAGGTGCTGTTNA
GGCCTCATCTGGTAACTACTGGATCGTTAAAAACNCATGGGGNACTTCATGGGGNANGGA
TGGTTACNTTTTTATGAGCAAANATANAAANAACNATTGTGGNATCGCAACAATGGCTTC
TTTCCCAACTGCCTCATCAAATTAAAATTTTATTTTTAANTGNCCNACTAACNTTAATTT
GATTTGTAATAAATAAAAAAAATAAAAATAAAAAATNAAATAAAAAAAAAAAAACT
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -