VFG142
Library VF
(Link to library)
Clone ID VFG142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VFG142F
(Link to Original site)
Representative DNA sequence
>VFG142 (VFG142Q) /CSM/VF/VFG1-B/VFG142Q.Seq.d/
GTTTGTTGTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTAT
CTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTG
TTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTG
CTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAG
GTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAG
CTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAG
AAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCT
CATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTA
CTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAG
ACGGTTTAATCGGTTTATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACA
GAGCTGCTTTCTTTGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
LLCSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIA
ADKQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKE
NPTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKRD
GLIGLYRGFGVSVGGIFVYRAAFF---


Translated Amino Acid sequence (All Frames)
Frame A:
vccvpyiti*lcltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykfnllqlkl
llinntkvssivllefqknkvsshygevi*pmlldisqlklltlpskintrnsssdtllk
ktqpnfslviyylvvllvqphyslfth*ilpvlv*llmlvlvqlvnslv*vtvslqstre
tv*svytvvlvylsevslstells---


Frame B:
fvvfhi*lynyv*pkekrrific*rffnrwycrwclknycctn*tc*iiitssicfnsnc
c**tiqryrrlfc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqthc*r
kpnqifhw*fiiwwccwcnlitlclpirfcpysfsc*cwywfsssihwfr*lylfnlqer
rfnrfipwfwcicrrylclqscfl---


Frame C:
LLCSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVSKTIVAPIERVKLLLQVQSASTQIA
ADKQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHTAKE
NPTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLAADVGTGSARQFTGLGNCISSIYKRD
GLIGLYRGFGVSVGGIFVYRAAFF---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHH383 (VHH383Q) /CSM/VH/VHH3-D/VHH383Q.Seq.d/ 1219 0.0
VFO479 (VFO479Q) /CSM/VF/VFO4-D/VFO479Q.Seq.d/ 1219 0.0
VFG142 (VFG142Q) /CSM/VF/VFG1-B/VFG142Q.Seq.d/ 1219 0.0
VFB604 (VFB604Q) /CSM/VF/VFB6-A/VFB604Q.Seq.d/ 1219 0.0
VFK227 (VFK227Q) /CSM/VF/VFK2-B/VFK227Q.Seq.d/ 1211 0.0
VHP837 (VHP837Q) /CSM/VH/VHP8-B/VHP837Q.Seq.d/ 1205 0.0
VHH216 (VHH216Q) /CSM/VH/VHH2-A/VHH216Q.Seq.d/ 1205 0.0
VFN227 (VFN227Q) /CSM/VF/VFN2-B/VFN227Q.Seq.d/ 1205 0.0
VFL550 (VFL550Q) /CSM/VF/VFL5-C/VFL550Q.Seq.d/ 1205 0.0
VFL424 (VFL424Q) /CSM/VF/VFL4-A/VFL424Q.Seq.d/ 1205 0.0

own update 2002.12.17
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds. 1219 0.0 1
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds. 1074 0.0 2
AF480922|AF480922.1 Nyctotherus ovalis from Blaberus sp. var. Duesseldorf ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product. 70 6e-29 4
AF480920|AF480920.1 Nyctotherus ovalis from Periplaneta americana var. Bayer ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product. 78 6e-29 4
BG894033|BG894033.1 kt17c05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 2e-28 4
BG893967|BG893967.1 kt22b03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 2e-28 4
BI323418|BI323418.1 kt71a10.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 2e-28 4
BG894099|BG894099.1 kt18c03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 2e-28 4
BG893792|BG893792.1 kt15d04.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 2e-28 4
BI397208|BI397208.1 kt58d01.y3 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence. 92 3e-28 4
dna update 2003. 9.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr... 383 e-105
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03... 291 1e-77
AF401758_1(AF401758|pid:none) Ethmostigmus rubripes ADP-ATP tran... 270 2e-71
AF025798_1(AF025798|pid:none) Drosophila pseudoobscura ADP/ATP t... 268 9e-71
BC061600_1(BC061600|pid:none) Xenopus tropicalis solute carrier ... 268 9e-71
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD... 266 3e-70
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t... 266 3e-70
AF480919_1(AF480919|pid:none) Nyctotherus ovalis from Periplanet... 266 3e-70
AF480921_1(AF480921|pid:none) Nyctotherus ovalis from Blaberus s... 266 5e-70
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden... 264 1e-69
protein update 2009. 6.20
PSORT

psg: 0.81 gvh: 0.58 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
16.0 %: mitochondrial

>> prediction for VFG142 is cyt

5' end seq. ID VFG142F
5' end seq.
>VFG142F.Seq
GTTTGTTGTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAACGACGTAT
CTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCTCAAAAACTATTG
TTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAACTCAAATTG
CTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAAAGAACAAG
GTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCCAACTCAAG
CTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACACTGCTAAAG
AAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGGTGCAACCT
CATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGATGTTGGTA
CTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATCTCTTCAATCTACAAGAGAG
ACGGTTTAATCGGTTTATACCGTGGTTTTGGTGTATCTGTCGGAGGTATCTTTGTCTACA
GAGCTGCTTTCTTTG----------
Length of 5' end seq. 615
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -